ABSTRACT
BACKGROUND: Whole-genome sequencing (WGS) of Neisseria gonorrhoeae isolates combined with epidemiological and phenotypic data provides better understanding of population dynamics. AIM: The objective of this study was to investigate the molecular epidemiology of N. gonorrhoeae isolates from three centres in Spain and determine associations of antimicrobial resistance. METHODS: Genetic characterization was performed in 170 N. gonorrhoeae isolates. WGS was carried out with the HiSeq platform (Illumina). Genome assemblies were submitted to the PubMLST Neisseria database website to determine NG-MAST, MLST and NG-STAR. Antimicrobial resistance genes and point mutations were identified with PubMLST. Phylogenomic comparison was based on whole-genome single nucleotide polymorphism analysis. RESULTS: Twenty-six MLST, 49 NG-MAST and 41 NG-STAR sequence types were detected, the most prevalent being MLST-ST9363 (27.1%), NG-MAST ST569 (12.4%) and NG-STAR ST193 (14.7%). Phylogenetic analysis identified 13 clusters comprising 69% of the isolates, with two of note: one involved cefixime-resistant isolates from Barcelona presenting a mosaic penA X and belonging to MLST-ST7363 and the other involved azithromycin-resistant isolates from Mallorca that possessed the C2611T mutation in the four 23S rRNA alleles belonging to MLST-ST1901. CONCLUSION: The population of N. gonorrhoeae is quite heterogeneous in Spain. Our results agree with previous data published in Europe, albeit with some differences in distribution between regions. This study describes the circulation of two gonococcal populations with a specific resistance profile and sequence type in a specific geographic area. WGS is an effective tool for epidemiological surveillance of gonococcal infection and detection of resistance genes.
Subject(s)
Anti-Infective Agents , Gonorrhea , Humans , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial/genetics , Gonorrhea/drug therapy , Gonorrhea/epidemiology , Microbial Sensitivity Tests , Multilocus Sequence Typing , Neisseria gonorrhoeae/genetics , Phylogeny , Prospective Studies , Spain/epidemiologyABSTRACT
With the aim to elucidate gonococcal antimicrobial resistance (AMR)-risk factors, we undertook a retrospective analysis of the molecular epidemiology and AMR of 104 Neisseria gonorrhoeae isolates from clinical samples (urethra, rectum, pharynx and cervix) of 94 individuals attending a sexually transmitted infection clinic in Madrid (Spain) from July to October 2016, and explored potential links with socio-demographic, behavioural and clinical factors of patients. Antimicrobial susceptibility was determined by E-tests, and isolates were characterised by N. gonorrhoeae multi-antigen sequence typing. Penicillin resistance was recorded for 15.4% of isolates, and most were susceptible to tetracycline, cefixime and azithromycin; a high incidence of ciprofloxacin resistance (~40%) was found. Isolates were grouped into 51 different sequence types (STs) and 10 genogroups (G), with G2400, ST5441, ST2318, ST12547 and G2992 being the most prevalent. A significant association (P = 0.015) was evident between HIV-positive MSM individuals and having a ciprofloxacin-resistant strain. Likewise, a strong association (P = 0.047) was found between patient age of MSM and carriage of isolates expressing decreased susceptibility to azithromycin. A decrease in the incidence of AMR gonococcal strains and a change in the strain populations previously reported from other parts of Spain were observed. Of note, the prevalent multi-drug resistant genogroup G1407 was represented by only three strains in our study, while the pan-susceptible clones such as ST5441, and ST2318, associated with extragenital body sites were the most prevalent.
Subject(s)
Drug Resistance, Bacterial , Genotype , Gonorrhea/epidemiology , Gonorrhea/microbiology , Neisseria gonorrhoeae/classification , Neisseria gonorrhoeae/drug effects , Adolescent , Adult , Disk Diffusion Antimicrobial Tests , Female , Humans , Incidence , Male , Middle Aged , Molecular Epidemiology , Multilocus Sequence Typing , Neisseria gonorrhoeae/genetics , Neisseria gonorrhoeae/isolation & purification , Retrospective Studies , Risk Factors , Spain/epidemiology , Young AdultABSTRACT
The lymphogranuloma venereum (LGV) outbreak described in the Netherlands in 2003, increased the interest in the genotyping of Chlamydia trachomatis. Although international surveillance programmes were implemented, these studies slowly decreased in the following years. Now data have revealed a new accumulation of LGV cases in those European countries with extended surveillance programmes. Between March 2009 and November 2011, a study was carried out to detect LGV cases in Madrid. The study was based on screening of C. trachomatis using commercial kits, followed by real-time pmpH-PCR discriminating LGV strains, and finally ompA gene was sequenced for phylogenetic reconstruction. Ninety-four LGV infections were identified. The number of cases increased from 10 to 30 and then to 54 during 2009-2011. Incidence of LGV was strongly associated with men who have sex with men; but in 2011, LGV cases were described in women and heterosexual men. Sixty-nine patients were also human immunodeficiency virus (HIV) positive, with detectable viral loads at the moment of LGV diagnosis, suggesting a high-risk of co-transmission. In fact, in four patients the diagnosis of HIV was simultaneous with LGV infection. The conventional treatment with doxycycline was prescribed in 75 patients, although in three patients the treatment failed. The sequencing of the ompA gene permitted identification of two independent transmission nodes. One constituted by 25 sequences identical to the L2b variant, and a second node including 37 sequences identical to L2. This epidemiological situation characterized by the co-circulation of two LGV variants has not been previously described, reinforcing the need for screening and genotyping of LGV strains.
Subject(s)
Chlamydia trachomatis/classification , Lymphogranuloma Venereum/epidemiology , Lymphogranuloma Venereum/microbiology , Adolescent , Adult , Aged , Bacterial Outer Membrane Proteins/genetics , Chlamydia trachomatis/genetics , Chlamydia trachomatis/isolation & purification , Disease Outbreaks , Female , History, 21st Century , Humans , Lymphogranuloma Venereum/diagnosis , Lymphogranuloma Venereum/history , Male , Middle Aged , Molecular Sequence Data , Phylogeny , Spain , Young AdultABSTRACT
OBJECTIVES: To estimate the prevalence and risk factors of high risk human papillomavirus (HPV) infection in migrant female sex workers (FSW) according to age and geographical origin. METHODS: Cross sectional study of migrant FSW attending a sexually transmitted infection (STI) clinic in Madrid during 2002. Information on sociodemographic characteristics, reproductive and sexual health, smoking, time in commercial sex work, history of STIs, HIV, hepatitis B, hepatitis C, syphilis, and genitourinary infections was collected. High risk HPV Infection was determined through the Digene HPV Test, Hybrid Capture II. Data were analysed through multiple logistic regression. RESULTS: 734 women were studied. Overall HPV prevalence was 39%; 61% in eastern Europeans, 42% in Ecuadorians, 39% in Colombians, 29% in sub-Saharan Africans, and 24% in Caribbeans (p = 0.057). HPV prevalence showed a decreasing trend by age; 49% under 20 years, 35% in 21-25 years,14% over 36 years% (p<0.005). In multivariate analyses, area of origin (p = 0.07), hormonal contraception in women not using condoms (OR 19.45 95% CI: 2.45 to 154.27), smoking, age, and an interaction between these last two variables (p = 0.039) had statistically significant associations with HPV prevalence. STI prevalence was 11% and was not related to age or geographical origin. CONCLUSIONS: High risk HPV prevalence in migrant FSW is elevated and related to age, area of origin, and use of oral contraceptives in women not using condoms. These data support the role of acquired immunity in the epidemiology of HPV infection and identifies migrant FSW as a priority group for sexual health promotion.
Subject(s)
Papillomavirus Infections/epidemiology , Sex Work/statistics & numerical data , Sexually Transmitted Diseases, Viral/epidemiology , Transients and Migrants/statistics & numerical data , Adolescent , Adult , Age Factors , Condoms/statistics & numerical data , Contraceptives, Oral , Cross-Sectional Studies , Female , Humans , Middle Aged , Papillomavirus Infections/ethnology , Prevalence , Regression Analysis , Risk Factors , Sex Work/ethnology , Sexually Transmitted Diseases, Viral/ethnology , Spain/epidemiologyABSTRACT
BACKGROUND: Our purpose was to describe the time trend in HIV seroprevalence among homo/ bisexual men. SUBJECTS AND METHOD: We analyzed 9,383 homo/ bisexual men who had a first voluntary test for HIV in 10 Spanish clinics from 1992 to 2000. RESULTS: HIV prevalence decreased from 20.3% in 1992 to 8.4% in 2000. In the multivariate analysis this decline appeared independently associated with the testing year and the birth cohort. CONCLUSIONS: New generations of voluntarily tested homo/bisexual men are less infected by HIV, but it is yet necessary to intensify the prevention programs.
Subject(s)
Bisexuality/statistics & numerical data , HIV Seropositivity/epidemiology , Homosexuality, Male/statistics & numerical data , Adolescent , Adult , Aged , Aged, 80 and over , Cohort Studies , Humans , Male , Middle Aged , Prevalence , Spain/epidemiologyABSTRACT
OBJECTIVE: To describe the time-trend in exposure categories and HIV seroprevalence among adolescents who underwent to voluntary testing in the period 1986-2000. METHODS: This study covered all adolescents, aged 13 to 19 years, at their first test for HIV in a sexually transmitted disease clinic in Madrid. Gender, age and HIV risk behaviours were collected. HIV diagnosis relies on ELISA test and Western blot confirmation. Time trends in HIV seroprevalence and exposure categories were analysed. RESULTS: A total of 1327 adolescents, 52% women and 22% under 18 years, were studied. The annual number of adolescents remained through the time, but injecting drug users (IDU) and IDU partners declined and female sex workers rose. 108 adolescents were diagnosed with HIV infection -71% were IDU-. HIV seroprevalence was 8.1% -31.3% in IDU-. It declined from 18.2% in 1986 to 1.5% in 1995, and after then it held steady under 4%. This decline involved several risk categories and was statistically significant in homo/bisexual men and female sex workers. The logistic regression analysis, adjusting for changes in exposure categories, showed an annual reduction in HIV seroprevalence (OR = 0.87; 95% CI, 0.81-0.94). CONCLUSIONS: HIV seroprevalence has decreased due to the fall of new young IDU and the decrease of seroprevalence within several exposure categories. HIV infections and risk behaviours continue happened among adolescents.
Subject(s)
HIV Seroprevalence , Adolescent , Adult , Female , Humans , Male , Risk Factors , Spain , Urban PopulationABSTRACT
An open cohort of 2670 homosexual men repeatedly tested for HIV at a Madrid clinic has registered 8050 person-years (PY) of follow-up and 157 seroconversions from 1988 to 2000. After declining from 1988 (4.71 per 100 PY), the incidence rate began a significant upward trend, reaching a figure of 2.16 per 100 PY in 2000. These findings ought to alert surveillance systems and prevention programmes.
Subject(s)
HIV Seropositivity , Homosexuality, Male , AIDS Serodiagnosis , Cohort Studies , Disease Progression , Humans , Male , SpainABSTRACT
Objetivos: Describir los cambios en los tipos de exposición y en la prevalencia del VIH en adolescentes que se hicieron la prueba voluntaria entre 1986 y 2000.Métodos: Se incluyó a todos los adolescentes de 13 a 19 años que se hicieron por primera vez la prueba del VIH en una clínica de enfermedades de transmisión sexual de Madrid. Se determinaron anticuerpos en suero mediante ELISA y se confirmaron con Western blot. Se analizaron los cambios en los tipos de exposición y en la seroprevalencia del VIH. Resultados: De los 1.327 adolescentes analizados (un 52 por ciento de mujeres) el 22 por ciento eran menores de 18 años. El número de adolescentes analizados anualmente se mantuvo, aunque descendieron los usuarios de drogas por vía parenteral (UDVP) y las parejas de UDVP, y aumentaron las mujeres que ejercen la prostitución. Se diagnosticaron 108 infecciones, el 71 por ciento en UDVP. La seroprevalencia fue del 8,1 por ciento, alcanzando el 31,3 por ciento en UDVP. Descendió desde 18,2 por ciento en 1986 al 1,5 por ciento en 1995, manteniéndose desde entonces por debajo del 4 por ciento. En varias categorías de exposición se observaron descensos, que alcanzaron significación estadística en varones homo/bisexuales y en mujeres que ejercen la prostitución. El análisis de regresión logística evidenció una reducción anual de la seroprevalencia ( odds ratio [OR] = 0,87; intervalo de confianza [IC] del 95 por ciento: 0,81-0,94) tras ajustar por los cambios en las categorías de exposición. Conclusiones: La prevalencia del VIH ha descendido debido a la disminución de nuevos UDVP y de la prevalencia en varias categorías de exposición. Siguen produciéndose conductas de riesgo e infecciones por el VIH en adolescentes (AU)
