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1.
Methods Mol Biol ; 1318: 119-26, 2015.
Article in English | MEDLINE | ID: mdl-26160570

ABSTRACT

Multiplexing is an important tool in assay development as it allows simultaneous detection of numerous analytes. Current platforms with the capability to multiplex are often complex and expensive. Here, we describe a low-cost planar array on a chip capable of simultaneously detecting up to 80 different analytes using the MagArray technology in as little as 10 min. This technology is easy to operate, has a small footprint, and is highly portable as it does not require any moving parts and/or microfluidics. This technology also allows the user to obtain a real-time read-out, which is very useful for analyzing complex sample matrices and for assessing cross-reactivity easily, or to monitor the dissociation of low affinity proteins during washes. The recommended sample volume for analysis is 100 µL after dilution, but as little as 20 µL can be measured if needed.


Subject(s)
Carcinoembryonic Antigen/analysis , Immunoassay/instrumentation , Lab-On-A-Chip Devices , Antibodies/chemistry , Humans , Immunoassay/methods , Inhibitor of Apoptosis Proteins/analysis , Magnets , Reference Standards , Sensitivity and Specificity , Survivin
2.
Foodborne Pathog Dis ; 12(2): 118-21, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25646966

ABSTRACT

Traditionally, serotyping of Escherichia coli has been performed via slide agglutination methods using antisera. More recently, multiplex immunoassays and "molecular serotyping" via polymerase chain reaction (PCR) have been validated for this purpose. In this study, the serogroups of 161 Shiga toxin-producing Escherichia coli (STEC) strains isolated from fecal samples of California cattle were typed by conventional methods using antisera as well as two newly developed multiplex PCR- and antibody-based microbead assays using the Luminex technology. Using the Luminex assays, we were capable of serotyping 11 STEC isolates that were previously determined untypeable for the O antigen by conventional methods using antisera. Except for 14 isolates, results from the 2 Luminex assays agreed.


Subject(s)
Shiga-Toxigenic Escherichia coli/classification , Animals , California , Cattle , Escherichia coli Proteins/analysis , Feces/microbiology , Fluorescence Polarization Immunoassay , Microspheres , Molecular Typing , Multiplex Polymerase Chain Reaction , O Antigens/analysis , Serotyping , Shiga-Toxigenic Escherichia coli/isolation & purification , Shiga-Toxigenic Escherichia coli/metabolism
3.
Foodborne Pathog Dis ; 10(8): 665-77, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23755895

ABSTRACT

Non-O157 Shiga toxin-producing Escherichia coli (non-O157 STEC) strains are increasingly recognized as important foodborne pathogens worldwide. Together with E. coli O157:H7, six additional STEC serogroups (O26, O45, O103, O111, O121, and O145) are now regulated as adulterants in certain raw beef products in the United States. However, effective detection and isolation of non-O157 STEC strains from food matrices remain challenging. In the past decade, great attention has been paid to developing rapid and reliable detection methods for STEC in general (targeting common virulence factors) and specific STEC serogroups in particular (targeting serogroup-specific traits). This review summarizes current trends in detecting non-O157 STEC in food, including culture, immunological, and molecular methods, as well as several novel technologies.


Subject(s)
Food Contamination/analysis , Food Microbiology/methods , Food Microbiology/trends , Meat Products/microbiology , Shiga-Toxigenic Escherichia coli/isolation & purification , Animals , Cattle , Colony Count, Microbial , Escherichia coli O157/growth & development , Escherichia coli O157/isolation & purification , Serotyping , Shiga-Toxigenic Escherichia coli/classification , Shiga-Toxigenic Escherichia coli/growth & development , United States , Virulence Factors
4.
J Food Prot ; 76(5): 867-70, 2013 May.
Article in English | MEDLINE | ID: mdl-23643130

ABSTRACT

Rapid and high-throughput identification and serotyping of Shiga toxin-producing Escherichia coli (STEC) O serogroups is important for detecting, investigating, and controlling STEC infection outbreaks and removing hazardous products from commerce. A Luminex microbead-based suspension array has been developed to identify the 11 most clinically relevant STEC serogroups: O26, O45, O91, O103, O104, O111, O113, O121, O128, O145, and O157. Here we present results of a blinded multilaboratory collaborative study involving 10 participants from nine laboratories using 55 unknown strains. From the total 495 analyses, two false-positive and three false-negative results were obtained, indicating the assay to be a rapid, high-throughput, and robust method for identifying clinically relevant STEC serogroups.


Subject(s)
Colony Count, Microbial/standards , Food Contamination/analysis , Food Microbiology , Laboratories/standards , Shiga-Toxigenic Escherichia coli/isolation & purification , Humans , Microspheres , Reproducibility of Results , Sensitivity and Specificity , Serotyping/methods , Serotyping/standards , Shiga-Toxigenic Escherichia coli/classification
5.
J Lab Autom ; 18(2): 178-83, 2013 Apr.
Article in English | MEDLINE | ID: mdl-23190790

ABSTRACT

Two automated platforms using immunomagnetic separation technology were compared for detecting and recovering Escherichia coli O157 in ground beef and sprouts and Shigella flexneri in green onions. The foods were inoculated with <20 CFU/25 g and tested at 5 and 24 h postincubation. Immunomagnetic beads were mixed with food enrichments, processed through the Pathatrix Auto or KingFisher Flex, and tested by real-time PCR (qPCR) and recovery on selective agars. At 5 h, the Pathatrix Auto detected E. coli O157 in 90% and 60% of the ground beef and sprouts samples and S. flexneri in all of the green onion samples. It also recovered E. coli O157 in all the samples but could not recover S. flexneri in any of the green onion samples. In comparison, the KingFisher Flex detected E. coli O157 in 80% and 30% of the ground beef and sprouts samples and S. flexneri in all of the green onion samples. It also recovered E. coli O157 in 90% of the ground beef samples but none of the sprouts samples and S. flexneri in 20% of the green onion samples. At 24 h, both platforms detected and recovered the target bacteria in all of the samples.


Subject(s)
Escherichia coli O157/physiology , Food Microbiology/methods , Immunomagnetic Separation/instrumentation , Shigella flexneri/physiology , Animals , Escherichia coli O157/isolation & purification , Polymerase Chain Reaction , Shigella flexneri/isolation & purification
6.
J Microbiol Methods ; 92(2): 226-30, 2013 Feb 15.
Article in English | MEDLINE | ID: mdl-23228591

ABSTRACT

Serotyping of Shiga toxin-producing Escherichia coli (STEC) has been contingent upon the availability of antisera. Here we describe a 7-plex microbead-based immunoassay to simultaneously serotype seven STECs (i.e., belonging to serogroups O26, O45, O103, O111, O121, O145, and O157) by the Luminex xMAP® technology. This technology presents many advantages: Its multiplexed format (up to 100 analytes) saves time, reagents, and test sample, and many regulatory agencies currently utilize this platform for other assays. In this study, a total of seventy-nine STEC strains belonging to the 7 different serogroups of interest were tested. These strains had been previously serotyped and their serogroup was confirmed by PCR. Except for one strain belonging to the O111 serogroup, nearly all strains (i.e., 98.7%; 78/79) were correctly identified on the Bio-Plex 100 instrument in less than 4h. This newly developed microbead-based immunoassay could be extended to include other STEC serogroups, virulence factors, and/or bacterial species.


Subject(s)
Microspheres , Shiga-Toxigenic Escherichia coli/classification , Escherichia coli Infections/diagnosis , Escherichia coli Infections/microbiology , Humans , Serotyping/methods
7.
J Food Prot ; 75(11): 2028-30, 2012 Nov.
Article in English | MEDLINE | ID: mdl-23127712

ABSTRACT

The ability to detect and isolate Shiga toxin-producing Escherichia coli (STEC) remains a major challenge for food microbiologists. Although methods based on nucleic acids and antibodies have improved detection of STECs in foods, isolation of these bacteria remains arduous. STEC isolation is necessary for matching food, environmental, and clinical isolates during outbreak investigations and for distinguishing between pathogenic and nonpathogenic organisms. STEC heart infusion washed blood agar with mitomycin-C (SHIBAM) is a modification of washed sheep blood agar prepared by adding mitomycin-C and optimizing both the washed blood and base agar to better isolate STECs. Most STEC isolates produce a zone of hemolysis on SHIBAM plates and are easily distinguishable from background microbiota. Here, we present data supporting the use of SHIBAM to isolate STECs from fresh produce. SHIBAM was tested for accuracy in identifying STECs (365 of 410 STEC strains were hemolytic, and 63 of 73 E. coli strains that did not produce Shiga toxin were not hemolytic) and for recovery from artificially inoculated fresh produce (11 of 24 romaine lettuce samples and 6 of 24 tomato samples). STEC recovery with SHIBAM agar was greatly improved when compared with recovery on Levine's eosin-methylene blue agar as a reference method.


Subject(s)
Colony Count, Microbial/methods , Food Contamination/analysis , Shiga-Toxigenic Escherichia coli/isolation & purification , Vegetables/microbiology , Agar , Blood , Culture Media , Humans , Mitomycin/pharmacology , Sensitivity and Specificity , Shiga Toxins/biosynthesis , Shiga-Toxigenic Escherichia coli/metabolism
8.
J Lab Autom ; 17(4): 309-14, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22357566

ABSTRACT

Conventional enzyme-linked immunosorbent assay (ELISA) is a gold standard for screening antibodies and testing for protein or antigen presence. A significant limitation of this assay resides in the fact that only one analyte can be assessed per microplate well. Here, we describe and investigate a new technology consisting of an automated ELISA system in which up to 10 analytes can be measured within one single well, thus improving productivity, accuracy, and repeatability by reducing the amount of human labor required. Another strength of the platform is that a user can load any necessary sets/subsets of beads to perform required assays, with improved flexibility compared to manufactured-loaded arrays for multiplex analysis. We also demonstrate that this system can be used to determine the pathogenicity (i.e., presence of Shiga toxins) and serotype (i.e., Escherichia coli O157) of E. coli isolates.


Subject(s)
Escherichia coli O157/pathogenicity , Medical Laboratory Science/methods , Shiga Toxins/analysis , Automation, Laboratory/methods , Enzyme-Linked Immunosorbent Assay/methods , Humans , Reproducibility of Results , Sensitivity and Specificity
9.
J Microbiol Methods ; 87(1): 105-10, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21835211

ABSTRACT

Identification and serotyping of Shiga toxin-producing Escherichia coli during foodborne outbreaks can aid in matching clinical, food, and environmental isolates when trying to identify the source of illness and ultimately food contamination. Herein we describe a Luminex microbead-based suspension array to identify the O serogroup of the ten most clinically relevant STECs: O26, O45, O91, O103, O111, O113, O121, O128, O145, and O157. The use of PCR followed by Luminex xMAP® technology enables the detection of multiple analytes in a single multiplex reaction with high throughput capabilities. One hundred and fourteen STEC isolates were correctly identified with no false positives among forty-six other organisms using this assay. Assay performance was tested in multiple laboratories using a panel of eleven different STEC serogroups on the Bio-Plex 200 and MAGPIX instruments. The STEC microbead-based suspension array can be performed in a 96-well plate format for high throughput screening in less than 4h. Furthermore, it is expandable, allowing for the addition of O serogroups should the need arise.


Subject(s)
Microspheres , Oligonucleotide Array Sequence Analysis/methods , Serotyping/methods , Shiga-Toxigenic Escherichia coli/classification , Multiplex Polymerase Chain Reaction , Oligonucleotide Array Sequence Analysis/instrumentation , Serotyping/instrumentation , Signal-To-Noise Ratio
10.
J Food Prot ; 74(3): 373-9, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21375872

ABSTRACT

Shiga toxin-producing Escherichia coli (STEC) is a significant foodborne pathogen with great economic consequences. There has been an increased food safety concern with this organism since outbreaks of human illnesses caused by this pathogen were first reported in 1982. Therefore, developing a reliable, sensitive, and rapid assay capable of detecting E. coli O157 and the main toxins produced by STEC (i.e., Shiga toxins 1 [Stx(1)] and 2 [Stx(2)]) will directly benefit regulatory agencies by minimizing analysis time. Here, we use Luminex technology to detect multiple analytes in a single 50-ml sample. Using commercially available monoclonal antibodies coupled to carboxylated magnetic microbeads, we developed an immunoassay capable of simultaneously serotyping E. coli O157 and detecting Stx(1) and/or Stx(2). The specificity and sensitivity of this immunoassay was tested against a collection of 34 E. coli isolates belonging to various O serogroups phenotypically different for Stx. The results were compared with microplate sandwich enzyme-linked immunosorbent assay (ELISA), and no cross-reactivity was observed for any of the monoclonal antibodies used. An increased sensitivity up to 1,000 times was observed in the microbead-based immunoassay when compared with the microplate sandwich ELISA. The results indicate that Luminex technology has the potential to simultaneously detect multiple targets without loss of specificity and/or sensitivity. A blind experiment was conducted with 48 samples of ground beef, lettuce, and milk spiked with ≤2 CFU/g E. coli. All the samples were correctly identified, with no false positives or false negatives. This microbead-based immunoassay could be extended to simultaneously detect additional foodborne pathogens and their toxic markers.


Subject(s)
Escherichia coli O157/immunology , Food Contamination/analysis , Immunoassay/methods , Shiga Toxin/isolation & purification , Antibodies, Bacterial/analysis , Antibodies, Monoclonal , Colony Count, Microbial/methods , Consumer Product Safety , Escherichia coli O157/metabolism , Food Microbiology , Humans , Microspheres , Sensitivity and Specificity , Shiga Toxin/biosynthesis
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