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1.
Genet Mol Res ; 14(4): 19028-39, 2015 Dec 29.
Article in English | MEDLINE | ID: mdl-26782553

ABSTRACT

The cucumber (Cucumis sativus L.) is an important crop grown worldwide. In this study, the genetic diversity of 42 cucumber cultivars in China was analyzed using 51 pairs of simple sequence repeat (SSR) primers. These primers identified 129 polymorphic loci, 95.6% of which were polymorphic. The mean effective number of alleles, mean Nei's gene diversity, and mean Shannon's information index were 0.36, 0.16, and 0.21, respectively. A cluster analysis demonstrated that the 42 cultivars could be divided into three groups, a result that was largely consistent with those of a principal component analysis (PCA). The PCA indicated that the three groups displayed significant variation in fruit traits. The cultivars of group 1 tended to have longer fruits (>30 cm), longer fruit ends (>4 cm), larger fruit diameters (>5 cm), a sharp strigose fruit spine, and the same fruit end shape. The basal color of the fruit in group 2 was dark green. Group 3 cultivars have no wax or mottling on the fruit surface. Our study demonstrates the value of our SSR primers for assessing genetic diversity in cucumber.


Subject(s)
Cucumis sativus/genetics , Fruit/genetics , Microsatellite Repeats , China , Cluster Analysis , Cucumis sativus/growth & development , Fruit/growth & development , Genes, Plant , Genetic Association Studies , Genetic Loci , Genetic Variation , Polymorphism, Genetic , Sequence Analysis, DNA
2.
Genet Mol Res ; 13(4): 9122-33, 2014 Oct 31.
Article in English | MEDLINE | ID: mdl-25366804

ABSTRACT

Reed canary grass (RCG) is a perennial grass traditionally cultivated for forage. It is also used as fuel to produce energy in Finland and Sweden, and other countries have expressed interest in the cultivation of RCG. In China, arable land is limited. Salinity is considered to be a major factor limiting plant crop development and productivity. To boost biofuel production of RCG and extend its range in saline soil, we seek to improve its salt tolerance. Proline acts as an osmolyte that accumulates when plants are subjected to abiotic stress. P5CS plays a crucial role in proline biosynthesis. We isolated a P5CS gene from RCG, designated B231P5CS (GenBank accession No. JQ622685). B231P5CS is a fragment (971 bp) that encodes a 323-amino acid polypeptide. We also cloned an actin gene fragment from RCG as a reference gene in expression analysis of B231P5CS gene. Expression analysis revealed that B231P5CS transcripts were upregulated in leaves after treatment with salt (200 mM NaCl) and that transcript levels of B231P5CS reached a maximum 12 h after exposure, which was 14.69 times the level in control plants. The trends of expression were exactly opposite in roots; transcripts were downregulated after salt treatment. Proline concentration increased in leaves after stress. In contrast, proline content of roots decreased up to 3.6-fold relative to controls. Changes in proline concentration after stress were correlated with B231P5CS expression. Our results suggest that B231P5CS is a stress-inducible gene and plays a non-redundant role in plant development. This gene may be used to improve stress tolerance of RGC and other bioenergy feedstock.


Subject(s)
Glutamate-5-Semialdehyde Dehydrogenase/genetics , Multienzyme Complexes/genetics , Phalaris/genetics , Phosphotransferases (Alcohol Group Acceptor)/genetics , Plant Proteins/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/genetics , Gene Expression Regulation, Enzymologic/drug effects , Gene Expression Regulation, Plant/drug effects , Glutamate-5-Semialdehyde Dehydrogenase/classification , Glutamate-5-Semialdehyde Dehydrogenase/metabolism , Molecular Sequence Data , Multienzyme Complexes/classification , Multienzyme Complexes/metabolism , Phalaris/enzymology , Phalaris/metabolism , Phosphotransferases (Alcohol Group Acceptor)/classification , Phosphotransferases (Alcohol Group Acceptor)/metabolism , Phylogeny , Plant Leaves/genetics , Plant Leaves/metabolism , Plant Proteins/classification , Plant Proteins/metabolism , Plant Roots/genetics , Plant Roots/metabolism , Proline/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Salt Tolerance/genetics , Sequence Analysis, DNA , Sodium Chloride/pharmacology , Stress, Physiological/genetics , Time Factors
3.
Genet Mol Res ; 12(3): 4070-7, 2013 Sep 27.
Article in English | MEDLINE | ID: mdl-24089096

ABSTRACT

Buffalo grass [Buchloe dactyloides (Nutt.) Engelm.] plants can be either male, female, or hermaphrodite (monoecious). As there is no morphological difference in the early vegetative growth of these three classes of plants, it is worthwhile to use molecular biological methods to attempt to identify the sex of a plant at this early growth period. In this study, we identified 23 plants that had a stable sex for over at least 3 years. Of these, 9 were male plants, 10 were female plants, and 4 were hermaphrodites. Screening of 300 RAPD primers identified a primer, namely S211 (5'-ttccccgcga-3'), which is capable of identifying male plants. The specific fragment was cloned, sequenced, and submitted to the GenBank database (accession No. JN982469). When used to identify the sex of 188 plants during their first growing season, the S211 primer correctly identified 85.8% of all male plants. Our results showed that the S211 primer can identify the male, and in doing so, it facilitates buffalo grass breeding work.


Subject(s)
Brachiaria/classification , Genetic Loci , Genome, Plant , Cloning, Molecular , DNA Primers/genetics , DNA, Plant/genetics , Genetic Markers , Genomics , Random Amplified Polymorphic DNA Technique , Sequence Analysis, DNA
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