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1.
Chaos ; 18(4): 043114, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19123624

ABSTRACT

We propose and analyze a model of evolution of species based upon a general description of phenotypes in terms of a single quantifiable characteristic. In the model, species spontaneously arise as solitary waves whose members almost never mate with those in other species, according to the rules laid down. The solitary waves in the model bifurcate and we interpret such events as speciation. Our aim in this work is to determine whether a generic mathematical mechanism may be identified with this process of speciation. Indeed, there is such a process in our model: it is the Andronov homoclinic bifurcation. It is robust and is at the heart of the formation of new solitary waves, and thus (in our model) new species.


Subject(s)
Algorithms , Biological Evolution , Ecosystem , Models, Biological , Nonlinear Dynamics , Oscillometry/methods , Population Dynamics , Animals , Computer Simulation , Humans , Species Specificity
2.
Chaos ; 14(3): 839-44, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15446994

ABSTRACT

It has recently been emphasized again that the very existence of stationary stable localized structures with short-range interactions might allow one to store information in nonequilibrium media, opening new perspectives on information storage. We show how to use generalized topological entropies to measure aspects of the quantities of storable and nonstorable information. This leads us to introduce a measure of the long-term stably storable information. As a first example to illustrate these concepts, we revisit a mechanism for the appearance of stationary stable localized structures that is related to the stabilization of fronts between structured and unstructured states (or between differently structured states).


Subject(s)
Computers, Molecular , Computing Methodologies , Information Storage and Retrieval/methods , Entropy , Mathematical Computing , Nonlinear Dynamics , Software
3.
Chaos ; 14(1): 193-8, 2004 Mar.
Article in English | MEDLINE | ID: mdl-15003061

ABSTRACT

In this paper we describe how to use the bifurcation structure of static localized solutions in one dimension to store information on a medium in such a way that no extrinsic grid is needed to locate the information. We demonstrate that these principles, deduced from the mathematics adapted to describe one-dimensional media, also allow one to store information on two-dimensional media.


Subject(s)
Computers, Molecular , Computing Methodologies , Information Storage and Retrieval/methods , Signal Processing, Computer-Assisted , Nonlinear Dynamics
4.
Phys Rev E Stat Nonlin Soft Matter Phys ; 64(2 Pt 2): 025202, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11497641

ABSTRACT

We analyze the dynamics of a weakly open Bose-Einstein condensate trapped in a double-well potential. Close to the self-trapping bifurcation, numerical simulations of the weakly irreversible one-dimensional Gross Pitaevskii equation reveal chaotic behaviors. A two-mode model is used to derive amplitude equations describing the complex dynamic of the condensate.

5.
Phys Rev Lett ; 86(5): 807-9, 2001 Jan 29.
Article in English | MEDLINE | ID: mdl-11177945

ABSTRACT

We study the stability of almost homoclinic homogeneous limit cycles with respect to spatiotemporal perturbations. It is shown that they are generically unstable. The instability is either the phase instability or a finite wavelength period doubling instability.

7.
Phys Rev Lett ; 84(14): 3069-72, 2000 Apr 03.
Article in English | MEDLINE | ID: mdl-11019014

ABSTRACT

We study the existence, the stability properties, and the bifurcation structure of static localized solutions in one dimension, near the robust existence of stable fronts between homogeneous solutions and periodic patterns.

8.
J Theor Biol ; 205(1): 47-52, 2000 Jul 07.
Article in English | MEDLINE | ID: mdl-10860699

ABSTRACT

For the particular case of an excitable FitzHugh-Nagumo system with diffusion, we investigate the transition from annihilation to crossing of the waves in the head-on collision. The analysis exploits the similarity between the local and the global phase portraits of the system. We find that the transition has features typical of the nucleation theory of first-order phase transitions, and may be understood through purely geometrical arguments. In the case of periodic boundary conditions, the transition is an infinite-dimensional analog of the creation and the vanishing of limit cycles via a homoclinic Andronov bifurcation. Both before and after the transition, the behavior of a single cell continues to be typical for excitable systems: a stable equilibrium state, and a threshold above which an excitation pulse can be induced. The generality and qualitative character of our argument shows that the phenomenon described can be observed in excitable systems well beyond the particular case presented here.


Subject(s)
Muscles/physiology , Nervous System Physiological Phenomena , Nonlinear Dynamics , Animals , Electrophysiology , Models, Biological
9.
Article in English | MEDLINE | ID: mdl-11970578

ABSTRACT

We intend to give an analytic description of the mechanisms involved in the periodic and chaotic wave alternation frequently observed in ring lasers. A set of amplitude equations is derived from the Maxwell-Bloch equations. These equations are studied analytically and numerically.

10.
Chaos ; 4(3): 439-442, 1994 Sep.
Article in English | MEDLINE | ID: mdl-12780118

ABSTRACT

This volume is devoted to the presentation of the main contributions to the workshop "From oscillations to excitability: A case study in spatially extended systems," organized by the authors in Nice in June 1993. It gives an overview of the current research on spatiotemporal patterns in a wide range of systems that display self-oscillatory or excitable behavior. It tries to give a better understanding of the transition from the oscillatory to the excitable regime and of its effect on the properties of spiral waves, and to fill the gap between the theories and concepts used to describe both regimes in the so-called "active media."

11.
Chaos ; 4(3): 485-489, 1994 Sep.
Article in English | MEDLINE | ID: mdl-12780124

ABSTRACT

The spiral waves observed in a liquid crystal submitted to a vertical electric field and a horizontal rotating magnetic field are explained in the framework of a purely mechanical description of the liquid crystal. The originality of the experiment described in this paper is the presence of the vertical electric field which allows us to analyze the spiral waves in the framework of a weakly nonlinear theory.

12.
Article in English | MEDLINE | ID: mdl-9961450
13.
Phys Rev Lett ; 72(10): 1471-1474, 1994 Mar 07.
Article in English | MEDLINE | ID: mdl-10055617
14.
Phys Rev A ; 43(12): 6700-6721, 1991 Jun 15.
Article in English | MEDLINE | ID: mdl-9905022
15.
Phys Rev Lett ; 66(25): 3249-3252, 1991 Jun 24.
Article in English | MEDLINE | ID: mdl-10043739
16.
Phys Rev Lett ; 65(19): 2370-2373, 1990 Nov 05.
Article in English | MEDLINE | ID: mdl-10042531
17.
Phys Rev Lett ; 65(11): 1352-1355, 1990 Sep 10.
Article in English | MEDLINE | ID: mdl-10042242
18.
Phys Rev Lett ; 64(8): 866-869, 1990 Feb 19.
Article in English | MEDLINE | ID: mdl-10042101
19.
Phys Rev Lett ; 63(18): 1954-1957, 1989 Oct 30.
Article in English | MEDLINE | ID: mdl-10040723
20.
Phys Rev Lett ; 62(25): 2957-2960, 1989 Jun 19.
Article in English | MEDLINE | ID: mdl-10040137
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