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1.
Molecules ; 28(11)2023 Jun 04.
Article in English | MEDLINE | ID: mdl-37299022

ABSTRACT

The aim of this work is to highlight the influence of blends based on TiO2 nanoparticles and reduced graphene oxide (RGO) on the photodegradation of acetaminophen (AC). To this end, the catalysts of TiO2/RGO blends with RGO sheet concentrations equal 5, 10, and 20 wt. % were prepared by the solid-state interaction of the two constituents. The preferential adsorption of TiO2 particles onto the RGO sheets' surfaces via the water molecules on the TiO2 particle surface was demonstrated by FTIR spectroscopy. This adsorption process induced an increase in the disordered state of the RGO sheets in the presence of the TiO2 particles, as highlighted by Raman scattering and scanning electron microscopy (SEM). The novelty of this work lies in the demonstration that TiO2/RGO mixtures, obtained by the solid-phase interaction of the two constituents, allow an acetaminophen removal of up to 95.18% after 100 min of UV irradiation. This TiO2/RGO catalyst induced a higher photodegradation efficiency of AC than TiO2 due to the presence of RGO sheets, which acted as a capture agent for the photogenerated electrons of TiO2, hindering the electron-hole recombination. The reaction kinetics of AC aqueous solutions containing TiO2/RGO blends followed a complex first-order kinetic model. Another novelty of this work is the demonstration of the ability of PVC membranes modified with Au nanoparticles to act both as filters for the removal of TiO2/RGO blends after AC photodegradation and as potential SERS supports, which illustrate the vibrational properties of the reused catalyst. The reuse of the TiO2/RGO blends after the first cycle of AC photodegradation indicated their suitable stability during the five cycles of pharmaceutical compound photodegradation.


Subject(s)
Graphite , Metal Nanoparticles , Acetaminophen , Oxides/chemistry , Gold , Graphite/chemistry , Titanium/chemistry , Water
2.
Front Neurosci ; 16: 955464, 2022.
Article in English | MEDLINE | ID: mdl-36389219

ABSTRACT

In resting tremor, the body part is in complete repose and often dampens or subsides entirely with action. The most frequent cause of resting tremors is known as idiopathic Parkinson's disease (PD). For examination, neurologists of patients with PD include tests such as finger-to-nose tests, walking back and forth in the corridor, and the pull test. This evaluation is focused on Unified Parkinson's disease rating scale (UPDRS), which is subjective as well as based on some daily life motor activities for a limited time frame. In this study, severity analysis is performed on an imbalanced dataset of patients with PD. This is the reason why the classification of various data containing imbalanced class distribution has endured a notable drawback of the performance achievable by various standard classification learning algorithms. In this work, we used resampling techniques including under-sampling, over-sampling, and a hybrid combination. Resampling techniques are incorporated with renowned classifiers, such as XGBoost, decision tree, and K-nearest neighbors. From the results, it is concluded that the Over-sampling method performed much better than under-sampling and hybrid sampling techniques. Among the over-sampling techniques, random sampling has obtained 99% accuracy using XGBoost classifier and 98% accuracy using the decision tree. Besides, it is observed that different resampling methods performed differently with various classifiers.

3.
Molecules ; 28(1)2022 Dec 24.
Article in English | MEDLINE | ID: mdl-36615329

ABSTRACT

In this article, we review recent progress concerning the development of sensorial platforms based on graphene derivatives and conducting polymers (CPs), alternatively deposited or co-deposited on the working electrode (usually a glassy carbon electrode; GCE) using a simple potentiostatic method (often cyclic voltammetry; CV), possibly followed by the deposition of metallic nanoparticles (NPs) on the electrode surface (ES). These materials have been successfully used to detect an extended range of biomolecules of clinical interest, such as uric acid (UA), dopamine (DA), ascorbic acid (AA), adenine, guanine, and others. The most common method is electrochemical synthesis. In the composites, which are often combined with metallic NPs, the interaction between the graphene derivatives-including graphene oxide (GO), reduced graphene oxide (RGO), or graphene quantum dots (GQDs)-and the CPs is usually governed by non-covalent functionalization through π-π interactions, hydrogen bonds, and van der Waals (VW) forces. The functionalization of GO, RGO, or GQDs with CPs has been shown to speed up electron transfer during the oxidation process, thus improving the electrochemical response of the resulting sensor. The oxidation mechanism behind the electrochemical response of the sensor seems to involve a partial charge transfer (CT) from the analytes to graphene derivatives, due to the overlapping of π orbitals.


Subject(s)
Graphite , Graphite/chemistry , Uric Acid , Polymers , Carbon/chemistry , Oxidation-Reduction , Electrodes , Ascorbic Acid , Electrochemical Techniques/methods
4.
Int J Mol Sci ; 22(15)2021 Jul 31.
Article in English | MEDLINE | ID: mdl-34361025

ABSTRACT

In this work, synthesis and optical properties of a new composite based on poly(o-phenylenediamine) (POPD) fiber like structures, poly(vinylidene fluoride) (PVDF) spheres and double-walled carbon nanotubes (DWNTs) are reported. As increasing the PVDF weight in the mixture of the chemical polymerization reaction of o-phenylenediamine, the presence of the PVDF spheres onto the POPD fibers surface is highlighted by scanning electron microscopy (SEM). The down-shift of the Raman line from 1421 cm-1 to 1415 cm-1 proves the covalent functionalization of DWNTs with the POPD-PVDF blends. The changes in the absorbance of the IR bands peaked around 840, 881, 1240 and 1402 cm-1 indicate hindrance steric effects induced of DWNTs to the POPD fiber like structures and the PVDF spheres, as a consequence of the functionalization process of carbon nanotubes with macromolecular compounds. The presence of the PVDF spheres onto the POPD fiber like structures surface induces a POPD photoluminescence (PL) quenching process. An additional PL quenching process of the POPD-PVDF blends is reported to be induced in the presence of DWNTs. The studies of anisotropic PL highlight a change of the angle of the binding of the PVDF spheres onto the POPD fiber like structures surface from 50.2° to 38° when the carbon nanotubes concentration increases in the POPD-PVDF/DWNTs composites mass up to 2 wt.%.


Subject(s)
Dimethylformamide/chemistry , Nanotubes, Carbon/chemistry , Polyvinyls/chemistry , Anisotropy , Nanocomposites/chemistry , Spectrum Analysis, Raman
5.
Phys Chem Chem Phys ; 21(46): 25606-25625, 2019 Nov 27.
Article in English | MEDLINE | ID: mdl-31720607

ABSTRACT

Electronic coupling between adjacent molecules is one of the key parameters determining the charge transfer (CT) rates in bulk heterojunction (BHJ) polymer solar cells (PSCs). We calculate theoretically electronic couplings for exciton dissociation (ED) and charge recombination (CR) processes at local poly(thiophene-co-quinoxaline) (TQ)-PC71BM interfaces. We use eigenstate-based coupling schemes, i.e. the generalized Mulliken-Hush (GMH) and fragment charge difference (FCD) schemes, including 2 to multiple (3-11) states. Moreover, we study the effects of functionals, excited state methods, basis sets, surrounding media, and relative placements of TQ and PC71BM on the coupling values. Generally, both schemes provide consistent couplings with the global hybrid functionals, which yield more charge-localized diabatic states and constant coupling values regardless of the number of states, and so the 2-state schemes may be sufficient. The (non-tuned and optimally tuned) long-range corrected (LRC) functionals result in more notable mixing of the local components with the CT states. Employing multiple states reduces the mixing and thus improves the LRC results, although the method still affects the GMH CR couplings. As the FCD scheme is less sensitive, we recommend combining it with the multi-state treatment for polymer-fullerene systems when using the LRC functionals. Finally, we employ the 11-state FCD couplings to calculate the ED and CR rates, which are consistent with the experimental rates of the polymer-fullerene systems. Our results provide more insight into choosing a suitable eigenstate-based coupling scheme for predicting the electronic couplings and CT rates in photoactive systems.

6.
Chem Commun (Camb) ; 54(28): 3440-3443, 2018 Apr 03.
Article in English | MEDLINE | ID: mdl-29445781

ABSTRACT

The enzyme catechol-O-methyltransferase (COMT) has water soluble (S-COMT) and membrane associated (MB-COMT), bitopic, isoforms. Of these MB-COMT is a drug target in relation to the treatment of Parkinson's disease. Using a combination of computational and experimental protocols, we have determined the substrate selection mechanism specific to MB-COMT. We show: (1) substrates with preferred affinity for MB-COMT over S-COMT orient in the membrane in a fashion conducive to catalysis from the membrane surface and (2) binding of COMT to its cofactor ADOMET induces conformational change that drives the catalytic surface of the protein to the membrane surface, where the substrates and Mg2+ ions, required for catalysis, are found. Bioinformatics analysis reveals evidence of this mechanism in other proteins, including several existing drug targets. The development of new COMT inhibitors with preferential affinity for MB-COMT over S-COMT is now possible and insight of broader relevance, into the function of bitopic enzymes, is provided.


Subject(s)
Catechol O-Methyltransferase/metabolism , Drug Design , Enzyme Inhibitors/pharmacology , Membrane Lipids/antagonists & inhibitors , Parkinson Disease/drug therapy , Computational Biology , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Humans , Isoenzymes/antagonists & inhibitors , Isoenzymes/metabolism , Membrane Lipids/metabolism , Molecular Dynamics Simulation , Parkinson Disease/metabolism
7.
Front Physiol ; 8: 252, 2017.
Article in English | MEDLINE | ID: mdl-28536532

ABSTRACT

Driven by interactions between lipids and proteins, biological membranes display lateral heterogeneity that manifests itself in a mosaic of liquid-ordered (Lo) or raft, and liquid-disordered (Ld) or non-raft domains with a wide range of different properties and compositions. In giant plasma membrane vesicles and giant unilamellar vesicles, specific binding of Cholera Toxin (CTxB) to GM1 glycolipids is a commonly used strategy to label raft domains or Lo membrane environments. However, these studies often use acyl-chain labeled bodipy-GM1 (bdGM1), whose headgroup accessibility and membrane order or phase partitioning may differ from those of GM1, rendering the interpretation of CTxB binding data quite problematic. To unravel the molecular basis of CTxB binding to GM1 and bdGM1, we explored the partitioning and the headgroup presentation of these gangliosides in the Lo and Ld phases using atomistic molecular dynamics simulations complemented by CTxB binding experiments. The conformation of both GM1 and bdGM1 was shown to be largely similar in the Lo and Ld phases. However, bdGM1 showed reduction in receptor availability when reconstituted into synthetic bilayer mixtures, highlighting that membrane phase partitioning of the gangliosides plays a considerable role in CTxB binding. Our results suggest that the CTxB binding is predominately modulated by the partitioning of the receptor to an appropriate membrane phase. Further, given that the Lo and Ld partitioning of bdGM1 differs from those of GM1, usage of bdGM1 for studying GM1 behavior in cells can lead to invalid interpretation of experimental data.

8.
Mol Pharm ; 13(6): 2095-107, 2016 06 06.
Article in English | MEDLINE | ID: mdl-27097108

ABSTRACT

Light-triggered drug delivery systems enable site-specific and time-controlled drug release. In previous work, we have achieved this with liposomes containing gold nanoparticles in the aqueous core. Gold nanoparticles absorb near-infrared light and release the energy as heat that increases the permeability of the liposomal bilayer, thus releasing the contents of the liposome. In this work, we replaced the gold nanoparticles with the clinically approved imaging agent indocyanine green (ICG). The ICG liposomes were stable at storage conditions (4-22 °C) and at body temperature, and fast near-infrared (IR) light-triggered drug release was achieved with optimized phospholipid composition and a 1:50 ICG-to-lipid molar ratio. Encapsulated small molecular calcein and FITC-dextran (up to 20 kDa) were completely released from the liposomes after light exposure for 15 s. Location of ICG in the PEG layer of the liposomes was simulated with molecular dynamics. ICG has important benefits as a light-triggering agent in liposomes: fast content release, improved stability, improved possibility of liposomal size control, regulatory approval to use in humans, and the possibility of imaging the in vivo location of the liposomes based on the fluorescence of ICG. Near-infrared light used as a triggering mechanism has good tissue penetration and safety. Thus, ICG liposomes are an attractive option for light-controlled and efficient delivery of small and large drug molecules.


Subject(s)
Drug Liberation/drug effects , Indocyanine Green/chemistry , Liposomes/chemistry , Drug Delivery Systems/methods , Fluorescence , Gold/administration & dosage , Humans , Infrared Rays , Metal Nanoparticles/chemistry , Polyethylene Glycols/chemistry
9.
J Phys Chem A ; 120(7): 1051-64, 2016 Feb 25.
Article in English | MEDLINE | ID: mdl-26840559

ABSTRACT

Conjugated donor-acceptor (D-A) copolymers show tremendous promise as active components in thin-film organic bulk heterojunction solar cells and transistors, as appropriate combinations of D-A units enable regulation of the intrinsic electronic and optical properties of the polymer. Here, the structural, electronic, and optical properties of two D-A copolymers that make use of thieno[3,4-c]pyrrole-4,6-dione as the acceptor and differ by their donor unit-benzo[1,2-b:4,5-b']dithiophene (BDT) vs the ladder-type heptacyclic benzodi(cyclopentadithiophene)-are compared using density functional theory methods. Our calculations predict some general similarities, although the differences in the donor structures lead also to clear differences. The extended conjugation of the stiff ladder-type donor destabilizes both the highest occupied and lowest unoccupied molecular orbital energies of the ladder copolymer and results in smaller gap energies compared to its smaller counterpart. However, more significant charge transfer nature is predicted for the smaller BDT-based copolymer by natural transition orbitals than for the ladder copolymer. That is, the influence of the acceptor on the copolymer properties is "diluted" to some extent by the already extended conjugation of the ladder-type donor. Thus, the use of stronger acceptor units with the ladder-type donors would benefit the future design of new D-A copolymers.

10.
J Comput Chem ; 36(9): 612-21, 2015 Apr 05.
Article in English | MEDLINE | ID: mdl-25639631

ABSTRACT

The interplay between electrostatic and van der Waals (vdW) interactions in porphyrin-C60 dyads is still under debate despite its importance in influencing the structural characteristics of such complexes considered for various applications in molecular photovoltaics. In this article, we sample the conformational space of a porphyrin-C60 dyad using Car-Parrinello molecular dynamics simulations with and without empirical vdW corrections. Long-range vdW interactions, which are poorly described by the commonly used density functional theory functionals, prove to be essential for a proper dynamics of the dyad moieties. Inclusion of vdW corrections brings porphyrin and C60 close together in an orientation that is in agreement with experimental observations. The structural differences arising from the vdW corrections are shown to be significant for several properties and potentially less important for others. Additionally, our Mulliken population analysis reveals that contrary to the common belief, porphyrin is not the primary electron donating moiety for C60 . In the considered dyad, fullerene's affinity for electrons is primarily satisfied by charge transfer from the amide group of the linker. However, we show that in the absence of another suitable bound donor, C60 can withdraw electrons from porphyrin if it is sufficiently close.

11.
PLoS One ; 9(12): e114490, 2014.
Article in English | MEDLINE | ID: mdl-25473947

ABSTRACT

In vitro toxicological studies together with atomistic molecular dynamics simulations show that occupational co-exposure with C60 fullerene may strengthen the health effects of organic industrial chemicals. The chemicals studied are acetophenone, benzaldehyde, benzyl alcohol, m-cresol, and toluene which can be used with fullerene as reagents or solvents in industrial processes. Potential co-exposure scenarios include a fullerene dust and organic chemical vapor, or a fullerene solution aerosolized in workplace air. Unfiltered and filtered mixtures of C60 and organic chemicals represent different co-exposure scenarios in in vitro studies where acute cytotoxicity and immunotoxicity of C60 and organic chemicals are tested together and alone by using human THP-1-derived macrophages. Statistically significant co-effects are observed for an unfiltered mixture of benzaldehyde and C60 that is more cytotoxic than benzaldehyde alone, and for a filtered mixture of m-cresol and C60 that is slightly less cytotoxic than m-cresol. Hydrophobicity of chemicals correlates with co-effects when secretion of pro-inflammatory cytokines IL-1ß and TNF-α is considered. Complementary atomistic molecular dynamics simulations reveal that C60 co-aggregates with all chemicals in aqueous environment. Stable aggregates have a fullerene-rich core and a chemical-rich surface layer, and while essentially all C60 molecules aggregate together, a portion of organic molecules remains in water.


Subject(s)
Air Pollutants, Occupational/toxicity , Fullerenes/toxicity , Acetophenones/chemistry , Acetophenones/toxicity , Air Pollutants, Occupational/chemistry , Benzaldehydes/chemistry , Benzaldehydes/toxicity , Benzyl Alcohol/chemistry , Benzyl Alcohol/toxicity , Cell Line, Tumor , Cresols/chemistry , Cresols/toxicity , Drug Interactions , Fullerenes/chemistry , Humans , Hydrophobic and Hydrophilic Interactions , Interleukin-1beta/metabolism , Macrophages/drug effects , Macrophages/physiology , Molecular Dynamics Simulation , Thermodynamics , Toluene/chemistry , Toluene/toxicity , Tumor Necrosis Factor-alpha/metabolism
12.
J Phys Chem B ; 118(17): 4571-81, 2014 May 01.
Article in English | MEDLINE | ID: mdl-24745688

ABSTRACT

We report parametrization of dipalmitoyl-phosphatidylcholine (DPPC) in the framework of the Optimized Parameters for Liquid Simulations all-atom (OPLS-AA) force field. We chose DPPC as it is one of the most studied phospholipid species and thus has plenty of experimental data necessary for model validation, and it is also one of the highly important and abundant lipid types, e.g., in lung surfactant. Overall, PCs have not been previously parametrized in the OPLS-AA force field; thus, there is a need to derive its bonding and nonbonding parameters for both the polar and nonpolar parts of the molecule. In the present study, we determined the parameters for torsion angles in the phosphatidylcholine and glycerol moieties and in the acyl chains, as well the partial atomic charges. In these calculations, we used three methods: (1) Hartree-Fock (HF), (2) second order Møller-Plesset perturbation theory (MP2), and (3) density functional theory (DFT). We also tested the effect of the polar environment by using the polarizable continuum model (PCM), and for acyl chains the van der Waals parameters were also adjusted. In effect, six parameter sets were generated and tested on a DPPC bilayer. Out of these six sets, only one was found to be able to satisfactorily reproduce experimental data for the lipid bilayer. The successful DPPC model was obtained from MP2 calculations in an implicit polar environment (PCM).


Subject(s)
Lipid Bilayers/chemistry , Molecular Dynamics Simulation , Phosphatidylcholines/chemistry , Water/chemistry , Molecular Conformation , Quantum Theory
13.
Photochem Photobiol ; 90(1): 79-84, 2014 01.
Article in English | MEDLINE | ID: mdl-23931185

ABSTRACT

The effect of intermolecular proton transfer on the spectral properties of levofloxacin in the ground and excited electronic states was studied. The preferred direction of possible protolytic reactions induced by UV irradiation in this compound was studied. It was found that the proton transfer processes have a considerable effect on the capability of the compound to emit light and occur on the nanosecond timescale. The photochemical reactions of the tree forms of levofloxacin (pH: 4.0, 7.0, 10.0) were studied by laser flash photolysis and product studies. Irradiation at pH 4 yielded a pulse and transient (λmax  = 395, 515, 575 nm) assigned to the protonated triplet. Irradiation at pH 7 yielded a transient species (λmax  = 525, 610 nm) assigned to the neutral form. Protonation of the anionic singlet excited state was also observed (λmax  = 440, 570, 680 nm).

14.
Phys Chem Chem Phys ; 15(40): 17408-18, 2013 Oct 28.
Article in English | MEDLINE | ID: mdl-24022239

ABSTRACT

Electron transfer at the adsorbate-surface interface is crucial in many applications but the steps taking place prior to and during the electron transfer are not always thoroughly understood. In this work a model system of 4-(porphyrin-5-yl)benzoic acid adsorbed as a corresponding benzoate on the ZnO wurtzite (101[combining macron]0) surface is studied using density functional theory (DFT) and time-dependent DFT. Emphasis is on the initial photoexcitation of porphyrin and on the strength of coupling between the porphyrin LUMO or LUMO + 1 and the ZnO conduction band that plays a role in the electron transfer. Firstly, ZnO wurtzite bulk is optimized to minimum energy geometry and the properties of the isolated ZnO (101[combining macron]0) surface model and the porphyrin model are discussed to gain insight into the combined system. Secondly, various orientations of the model porphyrin on the ZnO surface are studied: the porphyrin model standing perpendicularly to the surface and gradually brought close to the surface by tilting the linker in a few steps. The porphyrin model approaches the surface either sideways with hydrogen atoms of the porphyrin ring coming down first or twisted in a ca. 45° angle, giving rise to π-interactions of the porphyrin ring with ZnO. Because porphyrins are closely packed and near the surface, emerging van der Waals (vdW) interactions are examined using Grimme's D2 method. While the orientation affects the initial excitation of porphyrin only slightly, the coupling between the LUMO and LUMO + 1 of porphyrin and the conduction band of ZnO increases considerably if porphyrin is close to the surface, especially if the π-electrons are interacting with the surface. Based on the results of coupling studies, not only the distance between porphyrin and the ZnO surface but also the orientation of porphyrin can greatly affect the electron transfer.

15.
Biochim Biophys Acta ; 1827(6): 769-78, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23529178

ABSTRACT

The reaction mechanism of the cytochrome (cyt) bc1 complex relies on proton and electron transfer to/from the substrate quinone/quinol, which in turn generate a proton gradient across the mitochondrial membrane. Cardiolipin (CL) have been suggested to play an important role in cyt bc1 function by both ensuring the structural integrity of the protein complex and also by taking part in the proton uptake. Yet, the atom-scale understanding of these highly charged four-tail lipids in the cyt bc1 function has remained quite unclear. We consider this issue through atomistic molecular dynamics simulations that are applied to the entire cyt bc1 dimer of the purple photosynthetic bacterium Rhodobacter capsulatus embedded in a lipid bilayer. We find CLs to spontaneously diffuse to the dimer interface to the immediate vicinity of the higher potential heme b groups of the complex's catalytic Qi-sites. This observation is in full agreement with crystallographic studies of the complex, and supports the view that CLs are key players in the proton uptake. The simulation results also allow us to present a refined picture for the dimer arrangement in the cyt bc1 complex, the novelty of our work being the description of the role of the surrounding lipid environment: in addition to the specific CL-protein interactions, we observe the protein domains on the positive side of the membrane to settle against the lipids. Altogether, the simulations discussed in this article provide novel views into the dynamics of cyt bc1 with lipids, complementing previous experimental findings.


Subject(s)
Cardiolipins/chemistry , Electron Transport Complex III/chemistry , Molecular Dynamics Simulation , Rhodobacter capsulatus/enzymology , Crystallography, X-Ray , Electron Transport Complex III/physiology , Phospholipids/chemistry , Protein Multimerization , Protons
16.
J Mol Model ; 19(2): 697-704, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23011610

ABSTRACT

The effect of a strong electric field generated by molecular dipoles on the ground state electronic structure and the Q and B states as well as the lowest charge transfer (CT) excited state of porphine-2,5-dimethyl-1,4-benzoquinone (PQ) complex has been investigated theoretically. Density functional theory DFT and time-dependent DFT (TDDFT) with the BH&HLYP hybrid functional have been applied in these calculations. The molecular dipole effect was generated by imposing one or two helical homopeptides consisting of eight α-aminoisobutyric acid residues (Aib(8)) close to the PQ complex. The molecular dipoles in a close proximity to the PQ complex expose it to an electric field of the order of magnitude of 10(9) V/m. The presence of the ambient molecular dipoles affects mainly the energy of the lowest CT state and barely the energies of the Q and B states. The molecular dipoles affect the energies of the excited states in a similar way as an external electrostatic field. Hence, the electric field induced by the molecular dipoles of the helical peptides could be used analogously to the external electrostatic field to control electron transfer (ET) in the PQ complex.


Subject(s)
Benzoquinones/chemistry , Cyclohexenes/chemistry , Electrons , Peptides/chemistry , Porphyrins/chemistry , Electron Transport/radiation effects , Light , Models, Chemical , Photochemical Processes , Protein Structure, Secondary , Quantum Theory , Static Electricity , Thermodynamics
17.
Biochim Biophys Acta ; 1818(11): 2563-71, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22664062

ABSTRACT

Classical atom-scale molecular dynamics simulations, constrained free energy calculations, and quantum mechanical (QM) calculations are employed to study the diffusive translocation of ciprofloxacin (CPFX) across lipid membranes. CPFX is considered here as a representative of the fluoroquinolone antibiotics class. Neutral and zwitterionic CPFX coexist at physiological pH, with the latter being predominant. Simulations reveal that only the neutral form permeates the bilayer, and it does so through a novel mechanism that involves dissolution of concerted stacks of zwitterionic ciprofloxacins. Subsequent QM analysis of the observed molecular stacking shows the important role of partial charge neutralization in the stacks, highlighting how the zwitterionic form of the drug is neutralized for translocation. The findings propose a translocation mechanism in which zwitterionic CPFX molecules approach the membrane in stacks, but they diffuse through the membrane as neutral CPFX monomers due to intermolecular transfer of protons favored by partial solvation loss. The mechanism is expected to be of importance in the permeation and translocation of a variety of ampholitic drugs with stacking tendencies.


Subject(s)
Anti-Bacterial Agents/metabolism , Ciprofloxacin/metabolism , Lipid Bilayers , Biological Transport , Models, Molecular , Quantum Theory
18.
J Phys Chem B ; 116(24): 7334-41, 2012 Jun 21.
Article in English | MEDLINE | ID: mdl-22587534

ABSTRACT

Molecular dynamics simulation has been used to study the specific interactions between poly(ethylene glycol) (PEG) and three drug molecules for which PEG is used to aid delivery: paclitaxel and piroxicam, where PEG is a carrier agent, and hematoporphyrin, where PEG is covalently attached to form a "stealth shield". Simulating at physiological salt concentration, we found no evidence of any specific interaction between paclitaxel or piroxicam with PEG, but found a strong interaction for the case of hematoporphyrin. This interaction is lipophilic in nature, between the nonpolar (CH(2))(2) groups of the PEG and the porphin ring of the hematoporphyrin. This interaction was found to be strong enough that the PEG aggregated to the hematoporphyrin, independent of whether or not it was covalently bound. Interestingly, when the simulation was repeated in absence of salt we found evidence of this interaction being weakened. This led us to hypothesize a previously unforeseen mechanism: interaction with salt cations cause the PEG to coil around the salt ions, each ion binding to many PEG oxygens, increasing the exposure of the nonpolar ethylene groups, thus increasing the effective hydrophobicity of PEG. The Hydrophobic ethylene groups of the PEG chains adhere strongly to the hydrophobic porphin ring. Experiments involving absorption spectra measurements were conducted, and these results also indicated that presence of salt at physiological level increases the effective attractive interaction between PEG and hematoporphyrin. Taken together, our results demonstrate that while PEG, due to its solubility in both polar and nonpolar solvents, may act as a dissolution aid for paclitaxel and piroxicam, of the three drug molecules studied it will only have a protective role for the case of the hematoporphyrin.


Subject(s)
Hematoporphyrins/chemistry , Paclitaxel/chemistry , Piroxicam/chemistry , Polyethylene Glycols/chemistry , Drug Carriers/chemistry , Hydrophobic and Hydrophilic Interactions , Molecular Dynamics Simulation
19.
J Fluoresc ; 21(6): 2117-22, 2011 Nov.
Article in English | MEDLINE | ID: mdl-21750893

ABSTRACT

Electronic absorption, luminescence, IR and Raman spectra of polymorphous forms of fluoroquinolones were investigated. Assignment of the band maxima due to π→π* and n→π* electronic transitions were done. The structural changes are responsible for the absorption band modifications. One-electron transitions in the long wavelength region, excitation wavelengths, oscillator strengths and involved molecular orbitals for the zwitter-ionic and cationic protonated forms for different fluoroquinolones were calculated with quantum-chemical and molecular dynamic methods. The electron density redistributions on the FQs separate fragments during the photoexcitation to the S(1)*-state were carry out by Mulliken calculations. It was shown that the degree of neutral and zwitter-ion FQs penetration through the bacterium membrane is different.


Subject(s)
Fluoroquinolones/chemistry , Protons , Luminescence , Quantum Theory , Spectrophotometry, Infrared , Spectrophotometry, Ultraviolet , Spectrum Analysis, Raman
20.
J Phys Chem A ; 114(26): 7094-101, 2010 Jul 08.
Article in English | MEDLINE | ID: mdl-20524696

ABSTRACT

The fluorescence properties of three pyridylindolizine derivatives (one tricarbomethoxy-7-pyridyl-pyrrolopyridine and two dicarboethoxy-3-bromobenzoyl-7-pyridyl-pyrrolopyridines) have been investigated by applying density functional theory (DFT) and the time-dependent DFT (TDDFT). Performances of two hybrid-type functionals (BH&HLYP and B3LYP) and one generalized gradient approximation (GGA) functional (PBE) as well as three basis sets (SV(P), DZP, and TZVP) have been assessed. The solvent environment has been modeled with the conductor-like screening model (COSMO). Of the three functionals only BH&HLYP is able to yield reasonable estimates for all the studied indolizine derivatives whereas the success of the PBE and B3LYP functionals is highly dependent on the structure of the studied molecule. The SV(P) basis set provides geometrical changes as well as fluorescence maxima and Stokes shifts that agree with those obtained with DZP and TZVP. When a nonpolar solvent is used, COSMO is able to reproduce the experimental fluorescence maxima and Stokes shifts well. However, the agreement between the calculations and experiments is not as good when a solvent with higher polarity is used.


Subject(s)
Indolizines/chemistry , Quantum Theory , Models, Molecular , Molecular Conformation , Solvents/chemistry , Spectrometry, Fluorescence
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