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1.
Oncogene ; 35(24): 3209-16, 2016 06 16.
Article in English | MEDLINE | ID: mdl-26477306

ABSTRACT

While mutations in the KRAS oncogene are among the most prevalent in human cancer, there are few successful treatments to target these tumors. It is also likely that heterogeneity in KRAS-mutant tumor biology significantly contributes to the response to therapy. We hypothesized that the presence of commonly co-occurring mutations in STK11 and TP53 tumor suppressors may represent a significant source of heterogeneity in KRAS-mutant tumors. To address this, we utilized a large cohort of resected tumors from 442 lung adenocarcinoma patients with data including annotation of prevalent driver mutations (KRAS and EGFR) and tumor suppressor mutations (STK11 and TP53), microarray-based gene expression and clinical covariates, including overall survival (OS). Specifically, we determined impact of STK11 and TP53 mutations on a new KRAS mutation-associated gene expression signature as well as previously defined signatures of tumor cell proliferation and immune surveillance responses. Interestingly, STK11, but not TP53 mutations, were associated with highly elevated expression of KRAS mutation-associated genes. Mutations in TP53 and STK11 also impacted tumor biology regardless of KRAS status, with TP53 strongly associated with enhanced proliferation and STK11 with suppression of immune surveillance. These findings illustrate the remarkably distinct ways through which tumor suppressor mutations may contribute to heterogeneity in KRAS-mutant tumor biology. In addition, these studies point to novel associations between gene mutations and immune surveillance that could impact the response to immunotherapy.


Subject(s)
Adenocarcinoma/genetics , Adenocarcinoma/immunology , Genes, ras , Lung Neoplasms/genetics , Lung Neoplasms/immunology , Mutation , Protein Serine-Threonine Kinases/genetics , Proto-Oncogene Proteins p21(ras)/genetics , Tumor Suppressor Protein p53/genetics , AMP-Activated Protein Kinase Kinases , Adenocarcinoma/pathology , Adenocarcinoma of Lung , Cell Proliferation/genetics , Female , Gene Expression , Humans , Immunologic Surveillance/genetics , Lung Neoplasms/pathology , Male , Protein Serine-Threonine Kinases/immunology , Proto-Oncogene Proteins p21(ras)/biosynthesis , Proto-Oncogene Proteins p21(ras)/immunology , Signal Transduction , Tumor Suppressor Protein p53/immunology
2.
Cell Health Cytoskelet ; 7: 1-10, 2015.
Article in English | MEDLINE | ID: mdl-28090172

ABSTRACT

RB1 was the first tumor suppressor gene discovered. Over four decades of work have revealed that the Rb protein (pRb) is a master regulator of biological pathways influencing virtually every aspect of intrinsic cell fate including cell growth, cell-cycle checkpoints, differentiation, senescence, self-renewal, replication, genomic stability and apoptosis. While these many processes may account for a significant portion of RB1's potency as a tumor suppressor, a small, but growing stream of evidence suggests that RB1 also significantly influences how a cell interacts with its environment, including cell-to-cell and cell-to-extracellular matrix interactions. This review will highlight pRb's role in the control of cell adhesion and how alterations in the adhesive properties of tumor cells may drive the deadly process of metastasis.

3.
Cell Death Dis ; 4: e938, 2013 Nov 28.
Article in English | MEDLINE | ID: mdl-24287699

ABSTRACT

pRb is known as a classic cell cycle regulator whose inactivation is an important initiator of tumorigenesis. However, more recently, it has also been linked to tumor progression. This study defines a role for pRb as a suppressor of the progression to metastasis by upregulating integrin α10. Transcription of this integrin subunit is herein found to be pRb dependent in mouse osteoblasts. Classic pRb partners in cell cycle control, E2F1 and E2F3, do not repress transcription of integrin α10 and phosphorylation of pRb is not necessary for activation of the integrin α10 promoter. Promoter deletion revealed a pRb-responsive region between -108 bp to -55 bp upstream of the start of the site of transcription. pRb activation of transcription also leads to increased levels of integrin α10 protein and a greater concentration of the integrin α10 protein at the cell membrane of mouse osteoblasts. These higher levels of integrin α10 correspond to increased binding to collagen substrate. Consistent with our findings in mouse osteoblasts, we found that integrin α10 is significantly underexpressed in multiple solid tumors that have frequent inactivation of the pRb pathway. Bioinformatically, we identified data consistent with an 'integrin switch' that occurs in multiple solid tumors consisting of underexpression of integrins α7, α8, and α10 with concurrent overexpression of integrin ß4. pRb promotes cell adhesion by inducing expression of integrins necessary for cell adhesion to a substrate. We propose that pRb loss in solid tumors exacerbates aggressiveness by debilitating cellular adhesion, which in turn facilitates tumor cell detachment and metastasis.


Subject(s)
Integrin alpha Chains/metabolism , Osteoblasts/metabolism , Retinoblastoma Protein/metabolism , Animals , Antigens, CD/genetics , Antigens, CD/metabolism , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , E2F1 Transcription Factor/genetics , E2F1 Transcription Factor/metabolism , E2F3 Transcription Factor/genetics , E2F3 Transcription Factor/metabolism , Integrin alpha Chains/genetics , Integrin beta4/genetics , Integrin beta4/metabolism , Lung Neoplasms/genetics , Lung Neoplasms/metabolism , Melanoma/genetics , Melanoma/metabolism , Mice , Osteoblasts/cytology , Phosphorylation , Promoter Regions, Genetic/genetics , Retinoblastoma Protein/genetics
4.
Oncogene ; 26(24): 3532-40, 2007 May 24.
Article in English | MEDLINE | ID: mdl-17173074

ABSTRACT

In spite of the fact that cyclin-dependent kinase (cdk) inhibiting drugs are potent transcriptional repressors, we discover that p57 (Kip2, CDKN1C) transcription is significantly upregulated by three small molecule cdk inhibitors, including BMS-387032. Treatment of MDA-MB-231 breast cancer cells with BMS-387032 led to a stabilization of the E2F1 protein that was accompanied by significant increases in the p57 mRNA and protein. This increase did not occur in an E2F1-deficient cell line. An E2F1-estrogen receptor fusion protein activated the endogenous p57 promoter in response to hydroxytamoxifen treatment in the presence of cycloheximide. Luciferase constructs driven by the p57 promoter verified that upregulation of p57 mRNA by BMS-387032 is transcriptional and dependent on E2F-binding sites in the promoter. Expression of exogenous p57 significantly decreased the fraction of cells in S phase. Furthermore, p57-deficient MDA-MB-231 cell lines were significantly more sensitive to BMS-387032-induced apoptosis than controls. The results presented in this manuscript demonstrate that small molecule cdk inhibitors transcriptionally activate p57 dependent upon E2F1 and that this activation in turn serves to limit E2F1's death-inducing activity.


Subject(s)
Cyclin-Dependent Kinase Inhibitor p57/genetics , Cyclin-Dependent Kinases/antagonists & inhibitors , E2F Transcription Factors/metabolism , Enzyme Inhibitors/pharmacology , Feedback, Physiological , Oxazoles/pharmacology , Thiazoles/pharmacology , Binding Sites , Cell Cycle/drug effects , Cell Cycle/genetics , Cell Line , Cyclin-Dependent Kinase Inhibitor p57/drug effects , Cyclin-Dependent Kinase Inhibitor p57/metabolism , E2F Transcription Factors/drug effects , E2F1 Transcription Factor/drug effects , E2F1 Transcription Factor/genetics , E2F1 Transcription Factor/metabolism , Gene Expression Regulation/drug effects , Humans , Promoter Regions, Genetic , Transcription, Genetic , Up-Regulation
5.
Oncogene ; 25(23): 3258-66, 2006 Jun 01.
Article in English | MEDLINE | ID: mdl-16434972

ABSTRACT

Deregulation of the Rb/E2F pathway in human fibroblasts results in an E2F1-mediated apoptosis dependent on Atm, Nbs1, Chk2 and p53. Here, we show that E2F1 expression results in MRN foci formation, which is independent of the Nbs1 interacting region and the DNA-binding domain of E2F1. E2F1-induced MRN foci are similar to irradiation-induced foci (IRIF) that result from double-strand DNA breaks because they correlate with 53BP1 and gammaH2AX foci, do not form in NBS cells, do form in AT cells and do not correlate with cell cycle entry. In fact, we find that in human fibroblasts deregulated E2F1 causes a G1 arrest, blocking serum-induced cell cycle progression, in part through an Nbs1/53BP1/p53/p21(WAF1/CIP1) checkpoint pathway. This checkpoint protects against apoptosis because depletion of 53BP1 or p21(WAF1/CIP1) increases both the rate and extent of apoptosis. Nbs1 and p53 contribute to both checkpoint and apoptosis pathways. These results suggest that E2F1-induced foci generate a cell cycle checkpoint that, with sustained E2F1 activity, eventually yields to apoptosis. Uncontrolled proliferation due to Rb/E2F deregulation as well as inactivation of both checkpoint and apoptosis programs would then be required for transformation of normal cells to tumor cells.


Subject(s)
Cell Cycle/physiology , DNA Repair/physiology , E2F1 Transcription Factor/physiology , Fibroblasts/cytology , Fibroblasts/metabolism , Acid Anhydride Hydrolases , Apoptosis/physiology , Cell Cycle Proteins/physiology , Cell Line , Cyclin-Dependent Kinase Inhibitor p21/physiology , DNA Damage/physiology , DNA Repair Enzymes/metabolism , DNA-Binding Proteins/metabolism , E2F1 Transcription Factor/metabolism , Humans , Intracellular Signaling Peptides and Proteins/physiology , MRE11 Homologue Protein , Nuclear Proteins/physiology , Phosphoproteins/physiology , Tumor Suppressor Protein p53/physiology , Tumor Suppressor p53-Binding Protein 1
6.
Exp Biol Med (Maywood) ; 226(11): 1061-7, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11743143

ABSTRACT

Calorie restriction without essential nutrient deficiency (calorie restriction, CR) abrogates experimental carcinogenesis and extends healthful life span. To test whether CR influences cell-cycle protein expression during the hepatocellular proliferation induced by 70% partial hepatectomy (PH), BALB/c mice were separated into two groups, fed comparable semi-purified diets for 10 weeks that differed 40% in caloric offering, and were then subjected to PH. When PH was performed, CR mice weighed 36% less than ad libitum (AL)-fed mice (P < 0.01), but liver-to-body weight ratios were similar. During the regenerative hyperplasia, hepatocytes of CR mice demonstrated evidence of accelerated entrance and passage through G1 and S phases, and an earlier exit from the cell cycle. The first peak of DNA synthesis occurred 6 hr earlier, and the second peak was significantly greater among CR mice with 38% +/- 13% bromodeoxyuridine (BrdU)-positive hepatocytes, compared with 14% +/- 4% in AL mice (P < 0.01). More E2F-1 expression was induced at the hepatic G1/S boundary just prior to each peak of DNA synthesis in regenerating livers of CR mice (P < 0.01), and 8 hr earlier among CR mice. More hyperphosphorylated retinoblastoma p110 was detected during hepatic G1 and the G1-S transition among CR mice, coincident with the early hepatocellular proliferative wave. Cyclin A was induced during the first peak of DNA synthesis 4 hr earlier among CR mice, and it continued 4 hr longer in AL mice, indicating an earlier post-replicative exit by hepatocytes in CR mice. p21 was induced during the G1 phase at 4 hr post-PH, and was maximally expressed during and after peak DNA synthesis in both dietary groups. These results indicate that CR influences cell cycle protein expression levels, causing hepatocytes to enter into S phase earlier and exit abruptly from the cell cycle, and they support the premise that CR enhances induced cell responsiveness by influencing cell cycle regulatory controls.


Subject(s)
Cell Cycle , Energy Intake , Liver/metabolism , Age Factors , Animals , Binding Sites , Blotting, Western , Cell Division , DNA/biosynthesis , Female , Hepatectomy , Liver/physiology , Mice , Mice, Inbred BALB C , Regeneration , S Phase , Time Factors
7.
Biochem Biophys Res Commun ; 276(3): 930-9, 2000 Oct 05.
Article in English | MEDLINE | ID: mdl-11027571

ABSTRACT

Transforming growth factor beta (TGFbeta)1 induced dephosphorylation of pRb at multiple serine and threonine residues including Ser249/Thr252, Thr373, Ser780, and Ser807/811 in MV4-11 cells. Likewise, TGFbeta1 caused the dephosphorylation of p130, while inhibiting accumulation of p107 protein. Phosphorylated pRb was detected to bind E2F-1 and E2F-3, which appears to be a major form of pRb complexes in actively cycling cells. TGFbeta1 significantly downregulated pRb-E2F-1 and pRb-E2F-3 complexes as a result of inhibition of E2F-1 and E2F-3. In contrast, complexes of E2F-4 with pRb and with p130 were increased markedly upon TGFbeta1 treatment, whereas p107 associated E2F-4 was dramatically decreased. In agreement with these results, p130-E2F-4 DNA binding activity was dominant in TGFbeta1 treated cells, whereas p107-E2F-4 DNA binding activity was only found in proliferating cells. Our data strongly suggest that inhibition of E2Fs and differential regulation of pRb family-E2F-4 complexes are linked to TGFbeta1-induced growth inhibition. E2F-4 is switched from p107 to p130 and pRb when cells are arrested in G1 phase by TGFbeta1.


Subject(s)
Carrier Proteins , Cell Cycle Proteins , Leukemia, Myeloid/metabolism , Proteins , Retinoblastoma Protein/metabolism , Serine/metabolism , Threonine/metabolism , Transcription Factors/metabolism , Transforming Growth Factor beta/pharmacology , Blotting, Western , Cell Cycle/drug effects , Cell Division/drug effects , Cell Line , DNA/genetics , DNA/metabolism , DNA-Binding Proteins/metabolism , E2F Transcription Factors , E2F1 Transcription Factor , E2F3 Transcription Factor , E2F4 Transcription Factor , Gene Expression Regulation/drug effects , Humans , Leukemia, Myeloid/pathology , Macromolecular Substances , Myeloid Cells/cytology , Myeloid Cells/drug effects , Myeloid Cells/metabolism , Nuclear Proteins/biosynthesis , Nuclear Proteins/metabolism , Phosphoproteins/metabolism , Phosphorylation/drug effects , Precipitin Tests , Protein Binding/drug effects , Retinoblastoma-Binding Protein 1 , Retinoblastoma-Like Protein p107 , Retinoblastoma-Like Protein p130 , Time Factors , Transcription Factor DP1 , Transforming Growth Factor beta1 , Tumor Cells, Cultured
8.
J Biol Chem ; 275(43): 33981-7, 2000 Oct 27.
Article in English | MEDLINE | ID: mdl-10945992

ABSTRACT

Trichostatin A (TSA), a global repressor of histone deacetylase activity, inhibits the proliferation of a number of cell types. However, the identification of the mechanisms underlying TSA-mediated growth arrests has remained elusive. In order to resolve in more detail the cellular process modulated during the growth inhibition induced by TSA, we studied the effect of the drug on G(0)/G(1) traverse in mitogen-stimulated quiescent Balb/c-3T3 cells. Cyclin D1 and retinoblastoma proteins were induced following the mitogenic stimulation of both control and TSA-treated cells, and cyclin D1 formed complexes with CDK4 under both conditions. However, cyclin D1-associated kinase was not increased in growth-arrested cells. The lack of cyclin D-associated kinase was paralleled by an accumulation of RB in a hypophosphorylated form, as would be expected. In contrast, p130 became partially phosphorylated, accompanied by a marked increase in p130-dependent E2F DNA binding activity and a partial release of free E2F-4. Despite the presence of E2F complexes not bound to pocket proteins, late G(1) E2F-dependent gene expression was not observed. The lack of cyclin D1-associated kinase in TSA-treated cultures was potentially due to high levels of the cyclin-dependent inhibitor p27(kip1). However, the modulation of p27(kip1) levels by the deacetylase inhibitor cannot be responsible for the induction of the cell cycle arrest, since the growth of murine embryo fibroblasts deficient in both p27(kip1) and p21(cip1) was also inhibited by TSA. These data support a model in which TSA inhibits very early cell cycle traverse, which, in turn, leads to a decrease in cyclin D1-associated kinase activation and a repression of late cell cycle-dependent events. Alterations in early G(0)/G(1) gene expression accompany the TSA-mediated growth arrest.


Subject(s)
Cell Cycle Proteins , Cell Division/drug effects , Cyclin D1/metabolism , Cyclin-Dependent Kinases/metabolism , Enzyme Inhibitors/pharmacology , Histone Deacetylase Inhibitors , Hydroxamic Acids/pharmacology , Tumor Suppressor Proteins , 3T3 Cells , Animals , Cell Cycle , Cyclin-Dependent Kinase Inhibitor p21 , Cyclin-Dependent Kinase Inhibitor p27 , Cyclins/physiology , DNA/metabolism , Gene Expression/drug effects , Mice , Microtubule-Associated Proteins/physiology , Platelet-Derived Growth Factor/pharmacology
9.
Oncogene ; 19(30): 3422-33, 2000 Jul 13.
Article in English | MEDLINE | ID: mdl-10918599

ABSTRACT

We have identified a novel form of the full-length E2F-3 protein that we term E2F-3B. In contrast to full-length E2F-3, which is expressed only at the G1/S boundary, E2F-3B is detected throughout the cell cycle with peak levels in GO where it is associated with Rb. Transfection and in vitro translation experiments demonstrate that a protein identical to E2F-3B in size and iso-electric point is produced from the E2F-3 mRNA via the use of an alternative translational start site. This alternative initiation codon was mapped by mutagenesis to codon 102, an ACG codon. Mutation of the ACG codon at position 102 abolished E2F-3B expression, whereas the conversion of ACG 102 to a consensus ATG led to the expression of a protein indistinguishable from E2F-3B. Given these results, E2F-3B is missing 101 N-terminal amino acids relative to full-length E2F-3. This region includes a moderately conserved sequence of unknown function that is present only in the growth-promoting E2F family members, including E2F-1, 2 and full-length E2F-3. These observations make E2F-3B the first example of an E2F gene giving rise to two different protein species and also suggest that E2F-3 and E2F-3B may have opposing roles in cell cycle control.


Subject(s)
Alternative Splicing , Conserved Sequence , Transcription Factors/genetics , 3T3 Cells , Animals , Deoxycholic Acid/pharmacology , Down-Regulation , E2F3 Transcription Factor , HL-60 Cells , Humans , Mice , Mice, Inbred BALB C , Protein Biosynthesis , Protein Isoforms/genetics , Protein Isoforms/metabolism , Resting Phase, Cell Cycle , Retinoblastoma Protein/metabolism , Transcription Factors/metabolism
10.
Mol Biol Cell ; 11(6): 2117-30, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10848633

ABSTRACT

The cyclin/cyclin-dependent kinase (cdk) inhibitor p27(kip1) is thought to be responsible for the onset and maintenance of the quiescent state. It is possible, however, that cells respond differently to p27(kip1) in different conditions, and using a BALB/c-3T3 cell line (termed p27-47) that inducibly expresses high levels of this protein, we show that the effect of p27(kip1) on cell cycle traverse is determined by cell density. We found that ectopic expression of p27(kip1) blocked the proliferation of p27-47 cells at high density but had little effect on the growth of cells at low density whether exponentially cycling or stimulated from quiescence. Regardless of cell density, the activities of cdk4 and cdk2 were markedly repressed by p27(kip1) expression, as was the cdk4-dependent dissociation of E2F4/p130 complexes. Infection of cells with SV40, a DNA tumor virus known to abrogate formation of p130- and Rb-containing complexes, allowed dense cultures to proliferate in the presence of supraphysiological amounts of p27(kip1) but did not stimulate cell cycle traverse when cultures were cotreated with the potent cdk2 inhibitor roscovitine. Our data suggest that residual levels of cyclin/cdk activity persist in p27(kip1)-expressing p27-47 cells and are sufficient for the growth of low-density cells and of high-density cells infected with SV40, and that effective disruption of p130 and/or Rb complexes is obligatory for the proliferation of high-density cultures.


Subject(s)
Cell Cycle Proteins , Fibroblasts/cytology , Growth Inhibitors/biosynthesis , Microtubule-Associated Proteins/biosynthesis , Tumor Suppressor Proteins , 3T3 Cells , Animals , Cell Count , Cell Cycle , Cell Division , Cyclin-Dependent Kinase Inhibitor p27 , Gene Expression , Growth Inhibitors/genetics , Mice , Mice, Inbred BALB C , Microtubule-Associated Proteins/genetics , Simian virus 40/physiology
11.
J Cell Physiol ; 184(1): 1-16, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10825229

ABSTRACT

A key event in the regulation of eukaryotic gene expression is the posttranslational modification of nucleosomal histones, which converts regions of chromosomes into transcriptionally active or inactive chromatin. The most well studied posttranslational modification of histones is the acetylation of epsilon-amino groups on conserved lysine residues in the histones' amino-terminal tail domains. Significant advances have been made in the past few years toward the identification of histone acetyltransferases and histone deacetylases. Currently, there are over a dozen cloned histone acetyltransferases and at least eight cloned human histone deacetylases. Interestingly, many histone deacetylases can function as transcriptional corepressors and, often, they are present in multi-subunit complexes. More intriguing, at least some histone deacetylases are associated with chromatin-remodeling machines. In addition, several studies have pointed to the possible involvement of histone deacetylases in human cancer. The availability of the cloned histone deacetylase genes has provided swift progress in the understanding of the mechanisms of deacetylases, their role in transcription, and their possible role in health and disease.


Subject(s)
Histone Deacetylases/genetics , Histone Deacetylases/metabolism , Neoplasms/physiopathology , Transcription, Genetic , Animals , Histone Deacetylases/classification , Histones/metabolism , Humans , Neoplasms/enzymology , Neoplasms/genetics , Retinoblastoma Protein/metabolism
12.
J Biol Chem ; 273(11): 6190-5, 1998 Mar 13.
Article in English | MEDLINE | ID: mdl-9497341

ABSTRACT

We have observed that cyclin D3-dependent kinase activity is increased in the late G1 phase in BALB/c 3T3 fibroblasts. The profile of cyclin D3-associated activity closely parallels that of cyclin D1, which is also induced after mitogenic stimulation of quiescent cells. These activities correlate with the appearance of hyperphosphorylated p130, an Rb family member important in regulating E2F-4 and E2F-5 activity in fibroblastic cells. We demonstrated, however, that only the cyclin D3 activity efficiently phosphorylated p130 in an in vitro kinase assay. This apparent specificity was further demonstrated by experiments which demonstrated that cyclin D3 was physically associated with p130 at the times when D3-dependent kinase activity and p130 hyperphosphorylation were observed. Examination of E2F by electrophoretic mobility shift assay revealed that E2F-4 DNA binding activity existed in a p130.E2F complex at times before D3-dependent kinase activity was apparent and in a free E2F-4 complex after D3 activity developed. Thus, our data suggest that cyclin D3 preferentially phosphorylates p130 and is thereby specifically targeted to overcoming growth-suppressive control mediated through p130 pathways.


Subject(s)
Cyclins/metabolism , G1 Phase/physiology , Phosphoproteins/metabolism , Protein Kinases/metabolism , Proteins , 3T3 Cells , Animals , Cyclin D3 , DNA-Binding Proteins/metabolism , E2F4 Transcription Factor , Mice , Mice, Inbred BALB C , Phosphorylation , Protein Binding , Retinoblastoma-Like Protein p130 , Transcription Factors/metabolism
13.
Oncogene ; 16(10): 1289-98, 1998 Mar 12.
Article in English | MEDLINE | ID: mdl-9546430

ABSTRACT

E2F is a complex family of transcription factors which appears to regulate the transcription of genes required for the S phase of the mammalian cell cycle. In the present work, we have examined the mechanisms regulating E2F-3 accumulation in mouse fibroblasts. We have determined that E2F-3 DNA binding activity is restricted to the G1/S transition and S phase in both normal BALB/c-3T3 fibroblasts and in an SV40 virus-transformed BALB/c-3T3 derivative. Immunoblot analysis indicates that G0 and G1 cells have little or no E2F-3 polypeptide and that the increase in the DNA binding activity of E2F-3 at the G1/S boundary is reflected by an increase in total E2F-3 protein. In contrast to the E2F-3 polypeptide, RNAse protection assays demonstrate that the E2F-3 mRNA is clearly present in G0 and G1 cells. Finally, pulse/chase experiments indicate that the half-life of E2F-3 is approximately 40-fold greater in cells blocked in S phase relative to asynchronously growing cells. Together, these results indicate that the accumulation E2F-3 at S phase may be regulated, at least in part, at the level of protein stability.


Subject(s)
Cell Cycle/physiology , DNA Replication , Gene Expression Regulation , Transcription Factors/biosynthesis , 3T3 Cells , Animals , Cell Division , Cell Transformation, Viral , E2F3 Transcription Factor , G1 Phase , Kinetics , Mice , RNA, Messenger/biosynthesis , Resting Phase, Cell Cycle , Ribonucleases , S Phase , Simian virus 40/genetics , Transcription, Genetic
14.
Mol Cell Biol ; 17(12): 6994-7007, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9372931

ABSTRACT

The product of the retinoblastoma (Rb) susceptibility gene, Rb-1, regulates the activity of a wide variety of transcription factors, such as E2F, in a cell cycle-dependent fashion. E2F is a heterodimeric transcription factor composed of two subunits each encoded by one of two related gene families, denoted E2F and DP. Five E2F genes, E2F-1 through E2F-5, and two DP genes, DP-1 and DP-2, have been isolated from mammals, and heterodimeric complexes of these proteins are expressed in most, if not all, vertebrate cells. It is not yet clear whether E2F/DP complexes regulate overlapping and/or specific cellular genes. Moreover, little is known about whether Rb regulates all or a subset of E2F-dependent genes. Using recombinant E2F, DP, and Rb proteins prepared in baculovirus-infected cells and a repetitive immunoprecipitation-PCR procedure (CASTing), we have identified consensus DNA-binding sites for E2F-1/DP-1, E2F-1/DP-2, E2F-4/DP-1, and E2F-4/DP-2 complexes as well as an Rb/E2F-1/DP-1 trimeric complex. Our data indicate that (i) E2F, DP, and Rb proteins each influence the selection of E2F-binding sites; (ii) E2F sites differ with respect to their intrinsic DNA-bending properties; (iii) E2F/DP complexes induce distinct degrees of DNA bending; and (iv) complex-specific E2F sites selected in vitro function distinctly as regulators of cell cycle-dependent transcription in vivo. These data indicate that the specific sequence of an E2F site may determine its role in transcriptional regulation and suggest that Rb/E2F complexes may regulate subsets of E2F-dependent cellular genes.


Subject(s)
Carrier Proteins , DNA-Binding Proteins , Retinoblastoma Protein/metabolism , Transcription Factors/chemistry , Transcription Factors/metabolism , Animals , Baculoviridae/genetics , Base Sequence , Binding Sites/genetics , Cell Cycle Proteins/genetics , Cell Cycle Proteins/metabolism , Cell Line , Consensus Sequence , Cricetinae , DNA/genetics , DNA/metabolism , DNA Primers/genetics , Dimerization , E2F Transcription Factors , E2F1 Transcription Factor , E2F4 Transcription Factor , E2F5 Transcription Factor , Humans , In Vitro Techniques , Polymerase Chain Reaction , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Retinoblastoma Protein/genetics , Retinoblastoma-Binding Protein 1 , Transcription Factor DP1 , Transcription Factors/genetics
15.
Mol Cell Biol ; 16(5): 2119-27, 1996 May.
Article in English | MEDLINE | ID: mdl-8628278

ABSTRACT

We examined the role of promoter architecture, as well as that of the DNA-bending capacity of the E2F transcription factor family, in the activation of transcription. DNA phasing analysis revealed that a consensus E2F site in the E2F1 promoter possesses an inherent bend with a net magnitude of 40 +/-2 degrees and with an orientation toward the major groove relative to the center of the E2F site. The inherent DNA bend is reversed upon binding of E2F, generating a net bend with a magnitude of 25 +/- 3 degrees oriented toward the minor groove relative to the center of the E2F site. We also found that three members of the E2F family, in conjunction with the DP1 protein, bend the DNA toward the minor groove, suggesting that DNA bending is a characteristic of the entire E2F family. The Rb-E2F complex, on the other hand, does not reverse the intrinsic DNA bend. Analysis of a series of E2F1 deletion mutants defined E2F1 sequences which are not required for DNA binding but are necessary for the DNA-bending capacity of E2F. An internal region of E2F1, previously termed the marked box, which is highly homologous among E2F family members, was particularly important in DNA bending. We also found that a bent DNA structure can be a contributory component in the activation of the E2F1 promoter but is not critical in the repression of that promoter in quiescent cells. This finding suggests that E2F exhibits characteristics typical of modular transcription factors, with independent DNA-binding and transcriptional activation functions, but also has features of architectural factors that alter DNA structure.


Subject(s)
Carrier Proteins , Cell Cycle Proteins , DNA-Binding Proteins , Nucleic Acid Conformation , Promoter Regions, Genetic , Transcription Factors/genetics , Transcription Factors/metabolism , Transcriptional Activation , Adenovirus E2 Proteins/genetics , Animals , Base Sequence , Binding Sites , Cell Line , Chloramphenicol O-Acetyltransferase/biosynthesis , Consensus Sequence , E2F Transcription Factors , E2F1 Transcription Factor , Glutathione Transferase/biosynthesis , Molecular Sequence Data , Mutagenesis, Site-Directed , Oligodeoxyribonucleotides/chemistry , Recombinant Proteins/biosynthesis , Restriction Mapping , Retinoblastoma-Binding Protein 1 , Sequence Deletion , Transfection
17.
Proc Natl Acad Sci U S A ; 91(26): 12823-7, 1994 Dec 20.
Article in English | MEDLINE | ID: mdl-7809128

ABSTRACT

Previous experiments have identified the E2F transcription factor as a potential downstream target for the action of cellular regulatory activities, such as the Rb tumor suppressor protein, that control cell growth and that, when altered, contribute to the development of human tumors. In light of these findings, we have assayed the ability of the E2F1 and DP1 genes, which encode heterodimeric partners that together create E2F activity, to act in an oncogenic fashion. We find that E2F1, particularly in combination with the DP1 product, cooperates with an activated ras oncogene to induce the formation of morphologically transformed foci in primary rat embryo fibroblast cultures. In addition, an E2F1 chimeric protein, in which sequences involved in Rb binding have been replaced with the herpesvirus VP16 activation domain, exhibits increased transformation activity. Cells transfected with E2F1 and DP1 or the E2F1-VP16 chimera form colonies in soft agar and induce tumor formation in nude mice. We conclude that deregulated E2F1 expression and function can have oncogenic consequences.


Subject(s)
Carrier Proteins , Cell Cycle Proteins , Cell Transformation, Neoplastic/genetics , Genes, ras , Transcription Factors/genetics , Animals , Base Sequence , Cells, Cultured , DNA-Binding Proteins/metabolism , E2F Transcription Factors , E2F1 Transcription Factor , Herpes Simplex Virus Protein Vmw65/metabolism , In Vitro Techniques , Mice , Mice, Nude , Molecular Sequence Data , Neoplasms, Experimental/genetics , Oligonucleotide Probes/chemistry , Rats , Recombinant Fusion Proteins , Retinoblastoma Protein/metabolism , Retinoblastoma-Binding Protein 1 , Transcription Factor DP1 , Transcription Factors/metabolism , Transcription, Genetic , Transfection , Transplantation, Heterologous
18.
J Virol ; 68(7): 4213-9, 1994 Jul.
Article in English | MEDLINE | ID: mdl-8207796

ABSTRACT

Recent experiments demonstrate that a family of related proteins constitute the E2F transcription factor activity and that the interaction of two of these gene products, E2F1 and DP1, generates a heterodimer with DNA binding and transcriptional activating capacity. Previous experiments have shown that the adenovirus E4 19-kDa protein facilitates the formation of a stable E2F dimer on the adenovirus E2 promoter. We now show that coexpression of the E2F1 and DP1 products in transfected SAOS-2 cells, together with the E4 product, generates a multicomponent complex with specificity to the adenovirus E2 promoter. Using a yeast two-hybrid assay system, we find that the E2F1 hydrophobic heptad repeat (E2F1 amino acid residues 206 to 283) allows interaction with a corresponding domain of the DP1 protein (amino acids 196 to 245). We also find that the adenovirus E4 protein interacts with the DP1 hydrophobic heptad repeat domain, but we could not detect a direct interaction between E2F1 and E4. Additional assays demonstrate that the E4 protein can dimerize. Since our previous experiments have shown that mutations within the E2F1 hydrophobic heptad repeat element abolish the E4-mediated transcription enhancement in transfection assays, we conclude that the E4 protein likely interacts with the E2F1-DP1 heterodimer by directly binding to the DP1 product. As a consequence of the ability of E4 to dimerize, we propose that the stable complex formed on the two E2F sites within the E2 promoter is composed of two E2F1-DP1 heterodimers held together by an E4 dimer.


Subject(s)
Adenovirus E4 Proteins/metabolism , Carrier Proteins , Cell Cycle Proteins , DNA-Binding Proteins/metabolism , Promoter Regions, Genetic , Transcription Factors/metabolism , Adenovirus E4 Proteins/genetics , Base Sequence , Cell Line , DNA Primers , E2F Transcription Factors , E2F1 Transcription Factor , Molecular Sequence Data , Protein Binding , Repetitive Sequences, Nucleic Acid , Retinoblastoma-Binding Protein 1 , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism
19.
Mol Cell Biol ; 13(10): 6314-25, 1993 Oct.
Article in English | MEDLINE | ID: mdl-8413230

ABSTRACT

The cellular transcription factor E2F appears to be a target for the regulatory action of the retinoblastoma tumor suppressor gene product. The recent isolation of the E2F1 cDNA clone, which encodes a polypeptide with properties characteristic of E2F, has now allowed a more detailed analysis of the regulation of E2F function by Rb as well as the Rb-related p107 protein and the adenovirus 19-kDa E4 gene product. Previous experiments have shown that each of these regulatory proteins can modulate the activity of cellular E2F. We find that each of these regulatory events can be mediated through the E2F1 product. Moreover, an examination of various E2F1 mutations reveals distinct specificities for these regulatory proteins. For instance, the ability of E4 to alter E2F1 function is dependent upon sequences within a putative leucine repeat of E2F1 as well as within the C-terminal acidic domain. In contrast, the leucine repeat element was not important for Rb- or p107-mediated inhibition of E2F1 activity. Although the C-terminal acidic domain of E2F1, previously shown to be important for Rb binding, appears to be a site for regulation of E2F1 by Rb and p107, point mutations within this region distinguish recognition by Rb and p107. These results underscore the complexity of E2F regulatory interactions and also demonstrate a qualitative distinction in the interactions of Rb and p107 with E2F1, perhaps reflective of functional differences.


Subject(s)
Adenovirus E4 Proteins/metabolism , Carrier Proteins , Cell Cycle Proteins , DNA-Binding Proteins , Gene Expression Regulation , Nuclear Proteins , Proteins/metabolism , Retinoblastoma Protein/metabolism , Transcription Factors/genetics , Amino Acid Sequence , Base Sequence , Cloning, Molecular , DNA , E2F Transcription Factors , E2F1 Transcription Factor , Humans , Molecular Sequence Data , Mutagenesis , Repetitive Sequences, Nucleic Acid , Retinoblastoma-Binding Protein 1 , Retinoblastoma-Like Protein p107 , Sequence Homology, Amino Acid , Transcription Factor DP1 , Transcription Factors/metabolism , Transcription, Genetic , Tumor Cells, Cultured
20.
Nature ; 365(6444): 349-52, 1993 Sep 23.
Article in English | MEDLINE | ID: mdl-8377827

ABSTRACT

Several lines of evidence implicate the E2F transcription factor as an important component of cell proliferation control. First, E2F binding sites are found in the promoters of genes responsive to proliferation signals and the level of E2F binding activity increases at a time when many of these genes are activated. Second, the tumour suppressor protein Rb, as well as the related p107 protein, complexes with E2F, resulting in an inhibition of E2F transcriptional activity. Third, oncogenic products of the DNA tumour viruses can dissociate these E2F complexes. We provide here direct evidence that E2F is involved in cellular proliferation control. Specifically, we demonstrate that overexpression of the E2F1 complementary DNA can activate DNA synthesis in cells that would otherwise growth-arrest, with an efficiency that is similar to that achieved by the expression of the adenovirus E1A gene. Moreover, microinjection of the E2F1 cDNA into quiescent cells can induce S-phase entry, whereas two E2F1 mutants, which are unable to transactivate the DHFR and TK promoters, are unable to induce S phase. We conclude that the E2F transcription factor plays an important role in progression into S phase and that this probably coincides with its capacity to stimulate transcription.


Subject(s)
Carrier Proteins , Cell Cycle Proteins , DNA-Binding Proteins , S Phase/physiology , Transcription Factors/physiology , Adenoviridae/genetics , Bromodeoxyuridine , Cell Line , DNA , DNA Replication , E2F Transcription Factors , E2F1 Transcription Factor , Microinjections , Retinoblastoma Protein/pharmacology , Retinoblastoma-Binding Protein 1 , Transcription Factors/antagonists & inhibitors , Transcription Factors/biosynthesis , Transcription Factors/genetics , Transcription, Genetic , Transfection , beta-Galactosidase
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