Light-Induced Transformation of Virus-Like Particles on TiO2.

Titanium dioxide (TiO2) shows significant potential as a self-cleaning material to inactivate severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and prevent virus transmission. This study provides insights into the impact of UV-A light on the photocatalytic inactivation of adsorbed SARS-CoV-2 virus-like particles (VLPs) on a TiO2 surface at the molecular and atomic levels. X-ray photoelectron spectroscopy, combined with density functional theory calculations, reveals that spike proteins can adsorb on TiO2 predominantly via their amine and amide functional groups in their amino acids blocks. We employ atomic force microscopy and grazing-incidence small-angle X-ray scattering (GISAXS) to investigate the molecular-scale morphological changes during the inactivation of VLPs on TiO2 under light irradiation. Notably, in situ measurements reveal photoinduced morphological changes of VLPs, resulting in increased particle diameters. These results suggest that the denaturation of structural proteins induced by UV irradiation and oxidation of the virus structure through photocatalytic reactions can take place on the TiO2 surface. The in situ GISAXS measurements under an N2 atmosphere reveal that the virus morphology remains intact under UV light. This provides evidence that the presence of both oxygen and UV light is necessary to initiate photocatalytic reactions on the surface and subsequently inactivate the adsorbed viruses. The chemical insights into the virus inactivation process obtained in this study contribute significantly to the development of solid materials for the inactivation of enveloped viruses.

Adsorption and Inactivation of SARS-CoV-2 on the Surface of Anatase TiO2(101).

We investigated the adsorption of severe acute respiratory syndrome corona virus 2 (SARS-CoV-2), the virus responsible for the current pandemic, on the surface of the model catalyst TiO2(101) using atomic force microscopy, transmission electron microscopy, fluorescence microscopy, and X-ray photoelectron spectroscopy, accompanied by density functional theory calculations. Three different methods were employed to inactivate the virus after it was loaded on the surface of TiO2(101): (i) ethanol, (ii) thermal, and (iii) UV treatments. Microscopic studies demonstrate that the denatured spike proteins and other proteins in the virus structure readsorb on the surface of TiO2 under thermal and UV treatments. The interaction of the virus with the surface of TiO2 was different for the thermally and UV treated samples compared to the sample inactivated via ethanol treatment. AFM and TEM results on the UV-treated sample suggested that the adsorbed viral particles undergo damage and photocatalytic oxidation at the surface of TiO2(101) which can affect the structural proteins of SARS-CoV-2 and denature the spike proteins in 30 min. The role of Pd nanoparticles (NPs) was investigated in the interaction between SARS-CoV-2 and TiO2(101). The presence of Pd NPs enhanced the adsorption of the virus due to the possible interaction of the spike protein with the NPs. This study is the first investigation of the interaction of SARS-CoV-2 with the surface of single crystalline TiO2(101) as a potential candidate for virus deactivation applications. Clarification of the interaction of the virus with the surface of semiconductor oxides will aid in obtaining a deeper understanding of the chemical processes involved in photoinactivation of microorganisms, which is important for the design of effective photocatalysts for air purification and self-cleaning materials.

Surface structure of magnetite (111) under oxidizing and reducing conditions.

We report on differences in the magnetite (111) surface structure when prepared under oxidizing and reducing conditions. Both preparations were done under UHV conditions at elevated temperatures, but in one case the sample was cooled down while keeping it in an oxygen atmosphere. Scanning tunneling microscopy after each of the preparations showed a different apparent morphology, which is discussed to be an electronic effect and which is reflected in the necessity of using opposite bias tunneling voltages in order to obtain good images. Surface x-ray diffraction revealed that both preparations lead to Fe vacancies, leading to local O-terminations, the relative fraction of which depending on the preparation. The preparation under reducing conditions lead to a larger fraction of Fe-termination. The geometric structure of the two different terminations was found to be identical for both treatments, even though the surface and near-surface regions exhibit small compositional differences; after the oxidizing treatment they are iron deficient. Further evidence for the dependence of iron vs oxygen fractional surface terminations on preparation conditions comes from Fourier transform infrared reflection-absorption spectroscopy, which is used to study the adsorption of formic acid. These molecules dissociate and adsorb in chelating and bidentate bridging geometries on the Fe-terminated areas and the signal of typical infrared absorption bands is stronger after the preparation under reducing conditions, which results in a higher fraction of Fe-termination. The adsorption of formic acid induced an atomic roughening of the magnetite (111) surface which we conclude from the quantitative analysis of the crystal truncation rod data. The roughening process is initiated by atomic hydrogen, which results from the dissociation of formic acid after its adsorption on the surface. Atomic hydrogen adsorbs at surface oxygen and after recombination with another H this surface hydroxyl can form H2O, which may desorb from the surface, while iron ions diffuse into interstitial sites in the bulk.

Adsorption of oleic acid on magnetite facets.

The microscopic understanding of the atomic structure and interaction at carboxylic acid/oxide interfaces is an important step towards tailoring the mechanical properties of nanocomposite materials assembled from metal oxide nanoparticles functionalized by organic molecules. We have studied the adsorption of oleic acid (C17H33COOH) on the most prominent magnetite (001) and (111) crystal facets at room temperature using low energy electron diffraction, surface X-ray diffraction and infrared vibrational spectroscopy complemented with molecular dynamics simulations used to infer specific hydrogen bonding motifs between oleic acid and oleate. Our experimental and theoretical results give evidence that oleic acid adsorbs dissociatively on both facets at lower coverages. At higher coverages, the more pronounced molecular adsorption causes hydrogen bond formation between the carboxylic groups, leading to a more upright orientation of the molecules on the (111) facet in conjunction with the formation of a denser layer, as compared to the (001) facet. This is evidenced by the C=O double bond infrared line shape, in depth molecular dynamics bond angle orientation and hydrogen bond analysis, as well as X-ray reflectivity layer electron density profile determination. Such a higher density can explain the higher mechanical strength of nanocomposite materials based on magnetite nanoparticles with larger (111) facets.

Heterogeneous Adsorption and Local Ordering of Formate on a Magnetite Surface.

We report a novel heterogeneous adsorption mechanism of formic acid on the magnetite (111) surface. Our experimental results and density functional theory (DFT) calculations give evidence for dissociative adsorption of formic acid in quasibidentate and chelating geometries. The latter is induced by the presence of iron vacancies at the surface, making oxygen atoms accessible for hydrogen atoms from dissociated formic acid. DFT calculations predict that both adsorption geometries are energetically favorable under our experimental conditions. The calculations prove that the locally observed (√3 × âˆš3)R 30° superstructure consists of three formate molecules in a triangular arrangement, adsorbed predominantly in a chelating geometry. The results show how defects can stabilize alternative adsorption geometries, which is a crucial ingredient for a detailed atomistic understanding of reaction barriers on magnetite and other oxide surfaces, as well as for the stability of carboxylic acid based nanocomposite materials.

Role of hydroxylation for the atomic structure of a non-polar vicinal zinc oxide.

From the catalytic, semiconducting, and optical properties of zinc oxide (ZnO) numerous potential applications emerge. For the physical and chemical properties of the surface, under-coordinated atoms often play an important role, necessitating systematic studies of their influence. Here we study the vicinal ZnO([Formula: see text]) surface, rich in under-coordinated sites, using a combination of several experimental techniques and density functional theory calculations. We determine the atomic-scale structure and find the surface to be a stable, long-range ordered, non-polar facet of ZnO, with a high step-density and uniform termination. Contrary to an earlier suggested nano-faceting model, a bulk termination fits much better to our experimental observations. The surface is further stabilized by dissociatively adsorbed H2O on adjacent under-coordinated O- and Zn-atoms. The stabilized surface remains highly active for water dissociation through the remaining under-coordinated Zn-sites. Such a vicinal oxide surface is a prerequisite for future adsorption studies with atomically controlled local step and terrace geometry.

Order-disorder phase transition of the subsurface cation vacancy reconstruction on Fe3O4(001).

We present surface X-ray diffraction and fast scanning tunneling microscopy results to elucidate the nature of the surface phase transition on magnetite (001) from a reconstructed to a non-reconstructed surface around 720 K. In situ surface X-ray diffraction at a temperature above the phase transition, at which long-range order is lost, gives evidence that the subsurface cation vacancy reconstruction still exists as a local structural motif, in line with the characteristics of a 2D second-order phase transition. Fast scanning tunneling microscopy results across the phase transition underpin the hypothesis that the reconstruction lifting is initiated by surplus Fe ions occupying subsurface octahedral vacancies. The reversible near-surface iron enrichment and reduction of the surface to stoichiometric composition is further confirmed by in situ low-energy ion scattering, as well as ultraviolet and X-ray photoemission results.

Interaction of Water with Graphene/Ir(111) Studied by Vibrational Spectroscopy.

Water in confinement exhibits altered properties in molecular arrangement, bonding, and interaction with its neighboring environment, as compared to its bulk counterpart. In this work, periodically arranged D2O nano droplets of ∼1 nm size on top of a graphene/iridium moiré superstructure were investigated by Fourier transform infrared reflection absorption spectroscopy (FT-IRRAS) under ultrahigh vacuum conditions at ∼120 K. The IR bands of D2O clusters differ significantly from those observed for bulk D2O amorphous solid water or crystalline ice phases. Blue-shifted symmetric and asymmetric stretching bands with narrower band widths and modified band intensity ratios were observed, pointing to an enhanced internal order and a reduced nearest neighbor distance. Furthermore, two IR bands of "dangling" deuterium atoms were detected originating from threefold coordinated water molecules at the surface of the clusters and at their interface to the graphene layer. The latter arose only with the transition from the water clusters to an amorphous solid water layer. We propose that upon coalescence, opposing local dipoles trigger a hydrogen bond rearrangement at the interface. Our results represent a first step toward an atomistic understanding of water in confinement.