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1.
J Gen Virol ; 105(5)2024 May.
Article in English | MEDLINE | ID: mdl-38814706

ABSTRACT

High-throughput sequencing for uncultivated viruses has accelerated the understanding of global viral diversity and uncovered viral genomes substantially larger than any that have so far been cultured. Notably, the Lak phages are an enigmatic group of viruses that present some of the largest known phage genomes identified in human and animal microbiomes, and are dissimilar to any cultivated viruses. Despite the wealth of viral diversity that exists within sequencing datasets, uncultivated viruses have rarely been used for taxonomic classification. We investigated the evolutionary relationships of 23 Lak phages and propose a taxonomy for their classification. Predicted protein analysis revealed the Lak phages formed a deeply branching monophyletic clade within the class Caudoviricetes which contained no other phage genomes. One of the interesting features of this clade is that all current members are characterised by an alternative genetic code. We propose the Lak phages belong to a new order, the 'Grandevirales'. Protein and nucleotide-based analyses support the creation of two families, three sub-families, and four genera within the order 'Grandevirales'. We anticipate that the proposed taxonomy of Lak megaphages will simplify the future classification of related viral genomes as they are uncovered. Continued efforts to classify divergent viruses are crucial to aid common analyses of viral genomes and metagenomes.


Subject(s)
Bacteriophages , Genome, Viral , Phylogeny , Bacteriophages/genetics , Bacteriophages/classification , Bacteriophages/isolation & purification , High-Throughput Nucleotide Sequencing , Genetic Variation , Humans , Animals , Evolution, Molecular , Viral Proteins/genetics
2.
Anticancer Res ; 44(3): 895-900, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38423660

ABSTRACT

Pain is a debilitating phenomenon that dramatically impairs the quality of life of patients. Many chronic conditions, including cancer, are associated with chronic pain. Despite pharmacological efforts that have been conducted, many patients suffering from cancer pain remain without treatment. To date, opioids are considered the preferred therapeutic choice for cancer-related pain management. Unfortunately, opioid treatment causes side effects and inefficiently relieves patients from pain, therefore alternative therapies have been considered, including Cannabis Sativa and cannabinoids. Accumulating evidence has highlighted that an increasing number of patients are choosing to use cannabis and cannabinoids for the management of their soothing and non-palliative cancer pain and other cancer-related symptoms. However, their clinical application must be supported by convincing and reproducible clinical trials. In this review, we provide an update on cannabinoid use for cancer pain management. Moreover, we tried to turn a light on the potential use of cannabis as a possible therapeutic option for cancer-related pain relief.


Subject(s)
Cancer Pain , Cannabidiol , Cannabinoids , Cannabis , Neoplasms , Humans , Cannabinoids/therapeutic use , Cancer Pain/drug therapy , Cancer Pain/etiology , Quality of Life , Pain/drug therapy , Pain/etiology , Neoplasms/complications , Neoplasms/drug therapy , Cannabidiol/therapeutic use
3.
STAR Protoc ; 3(1): 101029, 2022 03 18.
Article in English | MEDLINE | ID: mdl-35059650

ABSTRACT

Lak megaphages are prevalent across diverse gut microbiomes and may potentially impact animal and human health through lysis of Prevotella. Given their large genome size (up to 660 kbp), Lak megaphages are difficult to culture, and their identification relies on molecular techniques. Here, we present optimized protocols for identifying Lak phages in various microbiome samples, including procedures for DNA extraction, followed by detection and quantification of genes encoding Lak structural proteins using diagnostic endpoint and SYBR green-based quantitative PCR, respectively. For complete details on the use and execution of this protocol, please refer to Crisci et al., (2021).


Subject(s)
Bacteriophages , Gastrointestinal Microbiome , Microbiota , Animals , Bacteriophages/genetics , Microbiota/genetics , Prevotella/genetics , Real-Time Polymerase Chain Reaction/methods
4.
iScience ; 24(8): 102875, 2021 Aug 20.
Article in English | MEDLINE | ID: mdl-34386733

ABSTRACT

Lak phages with alternatively coded ∼540 kbp genomes were recently reported to replicate in Prevotella in microbiomes of humans that consume a non-Western diet, baboons, and pigs. Here, we explore Lak phage diversity and broader distribution using diagnostic polymerase chain reaction and genome-resolved metagenomics. Lak phages were detected in 13 animal types, including reptiles, and are particularly prevalent in pigs. Tracking Lak through the pig gastrointestinal tract revealed significant enrichment in the hindgut compared to the foregut. We reconstructed 34 new Lak genomes, including six curated complete genomes, all of which are alternatively coded. An anomalously large (∼660 kbp) complete genome reconstructed for the most deeply branched Lak from a horse microbiome is also alternatively coded. From the Lak genomes, we identified proteins associated with specific animal species; notably, most have no functional predictions. The presence of closely related Lak phages in diverse animals indicates facile distribution coupled to host-specific adaptation.

5.
World J Clin Cases ; 9(36): 11504-11508, 2021 Dec 26.
Article in English | MEDLINE | ID: mdl-35071584

ABSTRACT

In older patients with comorbidities, hip fractures are both an important and debilitating condition. Since multimodal and multidisciplinary perioperative strategies can hasten functional recovery after surgery improving clinical outcomes, the choice of the most effective and safest pathway represents a great challenge. A key point of concern is the anesthetic approach and above all the choice of the locoregional anesthesia combined with general or neuraxial anesthesia.

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