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1.
J Neuropathol Exp Neurol ; 83(2): 94-106, 2024 01 19.
Article in English | MEDLINE | ID: mdl-38164986

ABSTRACT

This research assesses the capability of texture analysis (TA) derived from high-resolution (HR) T2-weighted magnetic resonance imaging to identify primary sequelae following 1-5 hours of controlled cortical impact mild or severe traumatic brain injury (TBI) to the left frontal cortex (focal impact) and secondary (diffuse) sequelae in the right frontal cortex, bilateral corpus callosum, and hippocampus in rats. The TA technique comprised first-order (histogram-based) and second-order statistics (including gray-level co-occurrence matrix, gray-level run length matrix, and neighborhood gray-level difference matrix). Edema in the left frontal impact region developed within 1 hour and continued throughout the 5-hour assessments. The TA features from HR images confirmed the focal injury. There was no significant difference among radiomics features between the left and right corpus callosum or hippocampus from 1 to 5 hours following a mild or severe impact. The adjacent corpus callosum region and the distal hippocampus region (s), showed no diffuse injury 1-5 hours after mild or severe TBI. These results suggest that combining HR images with TA may enhance detection of early primary and secondary sequelae following TBI.


Subject(s)
Brain Injuries, Traumatic , Brain Injuries , Rats , Animals , Brain/pathology , Magnetic Resonance Imaging/methods , Brain Injuries, Traumatic/complications , Brain Injuries, Traumatic/diagnostic imaging , Brain Injuries, Traumatic/pathology , Brain Injuries/diagnostic imaging , Brain Injuries/pathology , Frontal Lobe/diagnostic imaging , Frontal Lobe/pathology
2.
Microb Genom ; 9(4)2023 04.
Article in English | MEDLINE | ID: mdl-37052600

ABSTRACT

Recombination, the process whereby a segment of genetic material from one genome is inserted into another, producing a new chimeric genome, is an important evolutionary mechanism frequently observed in coronaviruses. The risks posed by recombination include the shuffling of advantageous mutations that may increase transmissibility, severity or vaccine escape. We present a genomic and epidemiological description of a new recombinant lineage of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), XR, first identified in Wales. The Pathogen Genomics Unit (Public Health Wales, UK) sequences positive SARS-CoV-2 PCR tests using the ARTIC SARS-CoV-2 sequencing protocol. Recombinants were detected using an in-house pipeline and the epidemiological data analysed in R. Nosocomial cases were defined as those with samples taken after >7 days in hospital. Between February and March 2022, we identified 78 samples with highly similar genomes, comprising a BA.1-like 5' end, a BA.2-like 3' end and a BA.2-like spike protein. This signature is consistent with recombination and was defined as XR by Pangolin (PANGO v1.8). A total of 50 % of cases had a sample collected whilst in hospital and the first three cases were immunocompromised patients. The patient median age was 58 years (range: 4-95 years) and most of the patients were fully vaccinated against SARS-CoV-2 (74 % third dose/booster). Three patients died within 28 days of their sample collection date, one of whom had COVID-19 listed amongst ICD10 (International Classification of Diseases 10) coded causes of death. Our integrated system enabled real-time monitoring of recombinant SARS-CoV-2 for early detection, in order to rapidly risk assess and respond. This work highlights the importance of setting-based surveillance of recombinant SARS-CoV-2, as well as the need to monitor immunocompromised populations through repeat testing and sequencing.


Subject(s)
COVID-19 , SARS-CoV-2 , Humans , Middle Aged , SARS-CoV-2/genetics , COVID-19/epidemiology , Wales/epidemiology , Polymerase Chain Reaction , Genomics
3.
Ecol Evol ; 11(18): 12349-12363, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34594504

ABSTRACT

Habitat selection and spatial usage are important components of animal behavior influencing fitness and population dynamic. Understanding the animal-habitat relationship is crucial in ecology, particularly in developing strategies for wildlife management and conservation. As this relationship is governed by environmental features and intra- and interspecific interactions, habitat selection of a population may vary locally between its core and edges. This is particularly true for central place foragers such as gray and harbor seals, where, in the Northeast Atlantic, the availability of habitat and prey around colonies vary at local scale. Here, we study how foraging habitat selection may vary locally under the influence of physical habitat features. Using GPS/GSM tags deployed at different gray and harbor seals' colonies, we investigated spatial patterns and foraging habitat selection by comparing trip characteristics and home-range similarities and fitting GAMMs to seal foraging locations and environmental data. To highlight the importance of modeling habitat selection at local scale, we fitted individual models to colonies as well as a global model. The global model suffered from issues of homogenization, while colony models showed that foraging habitat selection differed markedly between regions for both species. Despite being capable of undertaking far-ranging trips, both gray and harbor seals selected their foraging habitat depending on local availability, mainly based on distance from the last haul-out and bathymetry. Distance from shore and tidal current also influenced habitat preferences. Results suggest that local conditions have a strong influence on population spatial ecology, highlighting the relevance of processes occurring at fine geographical scale consistent with management within regional units.

4.
Curr Protoc Cell Biol ; 87(1): e107, 2020 06.
Article in English | MEDLINE | ID: mdl-32530579

ABSTRACT

The movement of intracellular cargo, such as transcripts, proteins, and organelles, is fundamental to cellular function. Neurons, due to their long axons and dendrites, are particularly dependent on proper intracellular trafficking and vulnerable to defects in the movement of intracellular cargo that are noted in neurodegenerative and neurodevelopmental disorders. Accurate quantification of intracellular transport is therefore needed for studying the mechanisms of cargo trafficking, the influence of mutations, and the effects of potentially therapeutic pharmaceuticals. In this article, we introduce an algorithm called "Kymolyzer." The algorithm can quantify intracellular trafficking along a defined path, such as that formed by the aligned microtubules of axons and dendrites. Kymolyzer works as a semi-autonomous kymography software application. It constructs and analyzes kymographs to measure the movement and distribution of fluorescently tagged objects along a user-defined path. The algorithm can be used under a wide variety of experimental conditions and can extract a diverse array of motility parameters describing intracellular movement, including time spent in motion, percentage of objects in motion, percentage of objects that are stationary, and velocities of motile objects. This article serves as a user manual describing the design of Kymolyzer, providing a stepwise protocol for its use and illustrating its functions with common examples. © 2020 Wiley Periodicals LLC Basic Protocol: Kymolyzer, a semi-autonomous kymography tool to analyze intracellular motility.


Subject(s)
Biological Transport/physiology , Kymography , Microtubules/metabolism , Organelles/metabolism , Algorithms , Animals , Axons/metabolism , Cell Movement/physiology , Kymography/methods , Protein Transport/physiology , Software
5.
PLoS One ; 14(1): e0209032, 2019.
Article in English | MEDLINE | ID: mdl-30601852

ABSTRACT

In ecological studies it is often assumed that predator foraging strategies and resource use are geographically and seasonally homogeneous, resulting in relatively static trophic relationships. However, certain centrally placed foragers (e.g. seals) often have terrestrial sites for breeding, resting, and moulting that are geographically distinct, and associated with different habitat types. Therefore, accurate estimations of predator diet at relevant spatial and temporal scales are key to understanding energetic requirements, predator-prey interactions and ecosystem structure. We investigate geographic variation in the diet of grey seals (Halichoerus grypus), a relatively abundant and widely distributed central place forager, to provide insights into geographic variation in resource use. Prey composition was identified using scat samples collected over concurrent timescales and a multivariate approach was used to analyse diet from two contrasting habitats. Regional differences in prey assemblages occurred within all years (2011-2013) and all seasons (ANOSIM, all p<0.05), apart from in winter. Telemetry data were used to identify core foraging areas and habitats most likely associated with scat samples collected at the two haul-out sites. Regional differences in the diet appear to reflect regional differences in the physical habitat features, with seals foraging in deeper waters over sandy substrates showing a higher prevalence of pelagic and bentho-pelagic prey species such as blue whiting and sandeels. Conversely, seals foraging in comparatively shallow waters had a greater contribution of demersal and groundfish species such as cephalopods and flatfish in their diet. We suggest that shallower waters enable seals to spend more time foraging along the benthos while remaining within aerobic dive limits, resulting in more benthic species in the diet. In contrast, the diet of seals hauled-out in areas adjacent to deeper waters indicates that either seals engage in a more pelagic foraging strategy, or that seals can spend less time at the benthos, resulting in comparatively more pelagic prey recovered in the diet. The substantial differences in prey assemblages over a small spatial scale (<300 km) demonstrates the importance of using regionally-specific diet information in ecosystem-based models to better account for different trophic interactions.


Subject(s)
Ecosystem , Seals, Earless/physiology , Animals , Feeding Behavior/physiology , Food Chain , Predatory Behavior/physiology , Telemetry
6.
Methods Mol Biol ; 1409: 69-77, 2016.
Article in English | MEDLINE | ID: mdl-26846803

ABSTRACT

This chapter describes the use of whole-body bioluminescent imaging (BLI) for the study of bacterial trafficking in live mice, with an emphasis on the use of bacteria in therapy of cancer. Bacteria present an attractive class of vector for cancer therapy, possessing a natural ability to grow preferentially within tumors following systemic administration. Bacteria engineered to express the lux gene cassette permit BLI detection of the bacteria and tumor sites concurrently. The location and levels of bacteria within tumors over time can be readily examined, visualized in two or three dimensions. The method is applicable to a wide range of bacterial species and tumor xenograft types. This article describes the protocol for analysis of bioluminescent bacteria within subcutaneous tumor-bearing mice. This powerful, and inexpensive, real-time imaging strategy represents an ideal method for the study of bacteria in vivo in the context of cancer research. This protocol outlines the procedure for studying lux-tagged Escherichia coli and Bifidobacterium breve in mice, demonstrating the spatial and temporal readout from 2D and 3D BLI achievable with whole-body in vivo luminescence imaging.


Subject(s)
Bacteria/metabolism , Luminescent Measurements/methods , Neoplasms/diagnosis , Neoplasms/metabolism , Animals , Bacteria/genetics , Cell Line, Tumor , Disease Models, Animal , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Genes, Reporter , Humans , Imaging, Three-Dimensional , Mice , Molecular Imaging/methods , Neoplasms/genetics , Neoplasms/therapy , Xenograft Model Antitumor Assays
7.
Curr Gene Ther ; 15(3): 277-88, 2015.
Article in English | MEDLINE | ID: mdl-25619884

ABSTRACT

The feasibility of utilising bacteria as vectors for gene therapy is becoming increasingly recognised. This is primarily due to a number of intrinsic properties of bacteria such as their tumour targeting capabilities, their ability to carry large genetic or protein loads and the availability of well-established genetic engineering tools for a range of common lab strains. However, a number of issues relating to the use of bacteria as vectors for gene therapy need to be addressed in order for the field to progress. Amongst these is the need for the development of non-invasive detection/imaging systems for bacteria within a living host. In vivo optical imaging has advanced preclinical research greatly, and typically involves engineering of bacteria with genetic expression constructs for luminescence (e.g. the lux operon) or fluorescent proteins (GFP etc.). This requirement for genetic modification can be restrictive, where engineering is not experimentally appropriate or technologically feasible (e.g. due to lack of suitable engineering tools). We describe a novel strategy exploiting endogenous bacterial enzymatic activity to specifically activate an exogenously administered fluorescent imaging probe. The red shifted, quenched fluorophore CytoCy5S is reduced to a fluorescent form by bacterial-specific nitroreductase (NTR) enzymes. NTR enzymes are present in a wide range of bacterial genera and absent in mammalian systems, permitting highly specific detection of Gram-negative and Gram-positive bacteria in vivo. In this study, dose-responsive bacterial-specific signals were observed in vitro from all genera examined - E. coli, Salmonella, Listeria, Bifidobacterium and Clostridium difficile. Examination of an NTR-knockout strain validated the enzyme specificity of the probe. In vivo whole-body imaging permitted specific, dose-responsive monitoring of bacteria over time in various infection models, and no toxicity to bacteria or host was observed. This study demonstrates the concept of exploiting innate NTR activity as a reporting strategy for wild-type bacteria using optical imaging, while the concept may also be extended to NTR-specific probes for use with other imaging modalities.


Subject(s)
Bacteria/genetics , Fluorescent Dyes , Nitroreductases/metabolism , Animals , Bacteria/metabolism , Female , Genetic Therapy/methods , Genetic Vectors , Mice , Mice, Inbred BALB C , Neoplasms/therapy , Prodrugs/metabolism
8.
Methods Mol Biol ; 1141: 201-9, 2014.
Article in English | MEDLINE | ID: mdl-24567141

ABSTRACT

Certain bacteria have emerged as biological gene vectors with natural tumor specificity, capable of specifically delivering genes or gene products to the tumor environment when intravenously (i.v.) administered to rodent models. Here, we describe procedures for studying this phenomenon in vitro and in vivo for both invasive and noninvasive bacteria suitable for exploitation as tumor-specific therapeutic delivery vehicles, due to their ability to replicate specifically within tumors and/or mediate bacterial-mediated transfer of plasmid DNA to mammalian cells (bactofection).


Subject(s)
Bifidobacterium/genetics , Escherichia coli/genetics , Gene Transfer Techniques , Genetic Therapy/methods , Listeria monocytogenes/genetics , Neoplasms/therapy , Plasmids/metabolism , Animals , Cell Line, Tumor , Coculture Techniques , Colony Count, Microbial , Gene Expression , Genes, Reporter , Genetic Vectors , Humans , Injections, Intralesional , Injections, Intravenous , Luciferases/genetics , Luciferases/metabolism , Mice , Neoplasm Transplantation , Neoplasms/genetics , Neoplasms/pathology
9.
Mol Ther ; 22(6): 1188-1197, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24569832

ABSTRACT

Oncolytic viruses (OVs) and bacteria share the property of tumor-selective replication following systemic administration. In the case of nonpathogenic bacteria, tumor selectivity relates to their ability to grow extracellularly within tumor stroma and is therefore ideally suited to restricting the production of bacterially produced therapeutic agents to tumors. We have previously shown the ability of the type 1 interferon antagonist B18R to enhance the replication and spread of vesicular stomatitis virus (VSV) by overcoming related cellular innate immunity. In this study, we utilized nonpathogenic bacteria (E. coli) expressing B18R to facilitate tumor-specific production of B18R, resulting in a microenvironment depleted of bioactive antiviral cytokine, thus "preconditioning" the tumor to enhance subsequent tumor destruction by the OV. Both in vitro and in vivo infection by VSVΔ51 was greatly enhanced by B18R produced from E. coli. Moreover, a significant increase in therapeutic efficacy resulted from intravenous (i.v.) injection of bacteria to tumor-bearing mice 5 days prior to i.v. VSVΔ51 administration, as evidenced by a significant reduction in tumor growth and increased survival in mice. Our strategy is the first example where two such diverse microorganisms are rationally combined and demonstrates the feasibility of combining complementary microorganisms to improve therapeutic outcome.


Subject(s)
Carcinoma, Lewis Lung/pathology , Escherichia coli/genetics , Oncolytic Viruses/genetics , Vesiculovirus/genetics , Viral Proteins/metabolism , Animals , Carcinoma, Lewis Lung/microbiology , Carcinoma, Lewis Lung/therapy , Carcinoma, Lewis Lung/virology , Cell Line, Tumor , Escherichia coli/metabolism , Female , Genetic Vectors/administration & dosage , Genetic Vectors/pharmacology , HT29 Cells , Humans , Injections, Intravenous , Interferon Type I/genetics , Interferon Type I/metabolism , Mice , Oncolytic Virotherapy/methods , Oncolytic Viruses/physiology , Vesiculovirus/physiology , Viral Proteins/genetics , Virus Replication
10.
PLoS One ; 8(5): e63720, 2013.
Article in English | MEDLINE | ID: mdl-23667663

ABSTRACT

Understanding the links between foraging behaviour and habitat use of key species is essential to addressing fundamental questions about trophic interactions and ecosystem functioning. Eight female grey seals (Halichoerus grypus) were equipped with time-depth recorders linked to Fastloc GPS tags following the annual moult in southwest Ireland. Individual dives were coupled with environmental correlates to investigate the habitat use and dive behaviour of free-ranging seals. Dives were characterised as either pelagic, benthic, or shallow (where errors in location and charted water depth made differentiating between pelagic and benthic dives unreliable). Sixty-nine percent of dives occurring in water >50 m were benthic. Pelagic dives were more common at night than during the day. Seals performed more pelagic dives over fine sediments (mud/sand), and more benthic dives when foraging over more three-dimensionally complex rock substrates. We used Markov chain analysis to determine the probability of transiting between dive states. A low probability of repeat pelagic dives suggests that pelagic prey were encountered en route to the seabed. This approach could be applied to make more accurate predictions of habitat use in data-poor areas, and investigate contentious issues such as resource overlap and competition between top predators and fisheries, essential for the effective conservation of these key marine species.


Subject(s)
Behavior, Animal/physiology , Diving/physiology , Ecosystem , Seals, Earless/physiology , Animals , Female , Geographic Information Systems , Geography , Ireland
11.
J Vis Exp ; (69): e4318, 2012 Nov 04.
Article in English | MEDLINE | ID: mdl-23149597

ABSTRACT

This video describes the use of whole body bioluminesce imaging (BLI) for the study of bacterial trafficking in live mice, with an emphasis on the use of bacteria in gene and cell therapy for cancer. Bacteria present an attractive class of vector for cancer therapy, possessing a natural ability to grow preferentially within tumors following systemic administration. Bacteria engineered to express the lux gene cassette permit BLI detection of the bacteria and concurrently tumor sites. The location and levels of bacteria within tumors over time can be readily examined, visualized in two or three dimensions. The method is applicable to a wide range of bacterial species and tumor xenograft types. This article describes the protocol for analysis of bioluminescent bacteria within subcutaneous tumor bearing mice. Visualization of commensal bacteria in the Gastrointestinal tract (GIT) by BLI is also described. This powerful, and cheap, real-time imaging strategy represents an ideal method for the study of bacteria in vivo in the context of cancer research, in particular gene therapy, and infectious disease. This video outlines the procedure for studying lux-tagged E. coli in live mice, demonstrating the spatial and temporal readout achievable utilizing BLI with the IVIS system.


Subject(s)
Escherichia coli K12/chemistry , Luminescent Measurements/methods , Animals , Escherichia coli K12/genetics , Escherichia coli K12/metabolism , Female , Humans , Luciferases/biosynthesis , Luciferases/chemistry , Luciferases/genetics , Mice , Mice, Inbred BALB C , Mice, Nude , Neoplasms, Experimental/chemistry , Neoplasms, Experimental/microbiology , Neoplasms, Experimental/pathology , Operon , Transplantation, Heterologous
12.
Neuron ; 74(2): 211-3, 2012 Apr 26.
Article in English | MEDLINE | ID: mdl-22542174

ABSTRACT

In this issue of Neuron, work from Moughamian and Holzbaur (2012) and Lloyd et al. (2012) reveals a role for p150 in initiation of retrograde transport at synaptic terminals. These studies also suggest how mutations of p150's CAP-Gly domain lead to both Perry syndrome and HMN7B disease.

13.
PLoS One ; 7(1): e30940, 2012.
Article in English | MEDLINE | ID: mdl-22295120

ABSTRACT

The ability to track microbes in real time in vivo is of enormous value for preclinical investigations in infectious disease or gene therapy research. Bacteria present an attractive class of vector for cancer therapy, possessing a natural ability to grow preferentially within tumours following systemic administration. Bioluminescent Imaging (BLI) represents a powerful tool for use with bacteria engineered to express reporter genes such as lux. BLI is traditionally used as a 2D modality resulting in images that are limited in their ability to anatomically locate cell populations. Use of 3D diffuse optical tomography can localize the signals but still need to be combined with an anatomical imaging modality like micro-Computed Tomography (µCT) for interpretation.In this study, the non-pathogenic commensal bacteria E. coli K-12 MG1655 and Bifidobacterium breve UCC2003, or Salmonella Typhimurium SL7207 each expressing the luxABCDE operon were intravenously (i.v.) administered to mice bearing subcutaneous (s.c) FLuc-expressing xenograft tumours. Bacterial lux signal was detected specifically in tumours of mice post i.v.-administration and bioluminescence correlated with the numbers of bacteria recovered from tissue. Through whole body imaging for both lux and FLuc, bacteria and tumour cells were co-localised. 3D BLI and µCT image analysis revealed a pattern of multiple clusters of bacteria within tumours. Investigation of spatial resolution of 3D optical imaging was supported by ex vivo histological analyses. In vivo imaging of orally-administered commensal bacteria in the gastrointestinal tract (GIT) was also achieved using 3D BLI. This study demonstrates for the first time the potential to simultaneously image multiple BLI reporter genes three dimensionally in vivo using approaches that provide unique information on spatial locations.


Subject(s)
Bacteria/genetics , Glioblastoma/microbiology , Luminescent Measurements/methods , Lung Neoplasms/microbiology , Molecular Imaging/methods , Administration, Oral , Animals , Cell Line, Tumor , Female , Genes, Reporter/genetics , Genetic Engineering , Glioblastoma/diagnostic imaging , Glioblastoma/pathology , Humans , Imaging, Three-Dimensional , Lung Neoplasms/diagnostic imaging , Lung Neoplasms/pathology , Mice , X-Ray Microtomography
14.
Proc Natl Acad Sci U S A ; 109(6): 2108-13, 2012 Feb 07.
Article in English | MEDLINE | ID: mdl-22308390

ABSTRACT

Bifidobacteria comprise a significant proportion of the human gut microbiota. Several bifidobacterial strains are currently used as therapeutic interventions, claiming various health benefits by acting as probiotics. However, the precise mechanisms by which they maintain habitation within their host and consequently provide these benefits are not fully understood. Here we show that Bifidobacterium breve UCC2003 produces a cell surface-associated exopolysaccharide (EPS), the biosynthesis of which is directed by either half of a bidirectional gene cluster, thus leading to production of one of two possible EPSs. Alternate transcription of the two opposing halves of this cluster appears to be the result of promoter reorientation. Surface EPS provided stress tolerance and promoted in vivo persistence, but not initial colonization. Marked differences were observed in host immune response: strains producing surface EPS (EPS(+)) failed to elicit a strong immune response compared with EPS-deficient variants. Specifically, EPS production was shown to be linked to the evasion of adaptive B-cell responses. Furthermore, presence of EPS(+) B. breve reduced colonization levels of the gut pathogen Citrobacter rodentium. Our data thus assigns a pivotal and beneficial role for EPS in modulating various aspects of bifidobacterial-host interaction, including the ability of commensal bacteria to remain immunologically silent and in turn provide pathogen protection. This finding enforces the probiotic concept and provides mechanistic insights into health-promoting benefits for both animal and human hosts.


Subject(s)
Bifidobacterium/immunology , Cell Membrane/immunology , Host-Pathogen Interactions/immunology , Immunity/immunology , Polysaccharides, Bacterial/immunology , Acids , Animals , Antibody Formation/immunology , B-Lymphocytes/immunology , Bifidobacteriales Infections/immunology , Bifidobacteriales Infections/microbiology , Bifidobacterium/growth & development , Bile , Citrobacter/growth & development , Colony Count, Microbial , Cytokines/metabolism , Digestive System/microbiology , Genetic Loci/genetics , Humans , Immune Evasion/immunology , Inflammation Mediators/metabolism , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Spleen/immunology , Spleen/microbiology
15.
Bioeng Bugs ; 3(3): 157-67, 2012.
Article in English | MEDLINE | ID: mdl-22179149

ABSTRACT

Iron is an essential growth factor for virtually all organisms. However, iron is not readily available in most environments and microorganisms have evolved specialized mechanisms, such as the use of siderophores and high-affinity transport systems, to acquire iron when confronted with iron-limiting conditions. In general these systems are tightly regulated to prevent iron-induced toxicity and because they are quite costly to the microbe. Because of this tight regulation we chose to explore the response of Bifidobacterium breve UCC2003 to iron limitation. Through microarray and complementation analyses we identified and characterized a presumed ferrous iron uptake system, encoded by bfeUOB, from B. breve UCC2003 and exploited its regulated transcription to develop an inducible expression system for use in bifidobacteria.


Subject(s)
Bacterial Proteins/genetics , Bifidobacterium/genetics , Iron/pharmacology , Bifidobacterium/drug effects , Gene Expression Regulation, Bacterial/drug effects , Gene Expression Regulation, Bacterial/genetics , Siderophores
16.
J Urol ; 186(2): 687-93, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21683415

ABSTRACT

PURPOSE: The induction of systemic immune responses against antigenic targets that are over expressed by cancer cells represents a powerful therapeutic strategy to target metastatic cancer. We generated specific antitumor immune responses in a murine model of prostate cancer by oral administration of an attenuated strain of Salmonella typhimurium containing a plasmid coding for murine prostate stem cell antigen. MATERIALS AND METHODS: Trafficking of S. typhimurium SL7207 in the initial 10 hours after gavage feeding was determined using a bacterial lux expressing strain and live bioluminescence imaging. For vaccination trials male C57 BL/6 mice were gavage fed SL7207/murine prostate stem cell antigen expressing plasmid or controls twice at 2-week intervals. One week after the last feeding the mice were challenged subcutaneously with TRAMPC1 murine prostate carcinoma cells. Tumor dynamics and animal survival were recorded. RESULTS: Clearance of bacterial vector from animals was complete 9 hours after feeding. Delivery of vector transformed with a firefly luciferase reporter plasmid resulted in maximal eukaryotic reporter gene expression in splenocytes 48 hours after feeding. Induction of tumor protective immunity was achieved by feeding the mice murine prostate stem cell antigen expressing plasmid bearing bacteria and greater than 50% of immunized mice remained tumor free. No significant toxicity was observed. Induction of T-helper type 1 immune responses was determined by measuring interferon-γ produced by splenocytes from vaccinated mice. When adoptively transferred to naive animals, splenocytes from vaccinated mice prevented tumor growth in 66% of challenged animals. CONCLUSIONS: Endogenous prostate cancer antigen gene delivery using a bacterial vector resulted in breaking immune tolerance to murine prostate stem cell antigen and significant retardation of tumor growth.


Subject(s)
Antigens, Neoplasm/genetics , Cancer Vaccines/immunology , Genetic Therapy , Neoplasm Proteins/genetics , Prostatic Neoplasms/prevention & control , Animals , DNA, Bacterial , GPI-Linked Proteins/genetics , Male , Mice , Mice, Inbred C57BL , Salmonella typhimurium
17.
Int J Food Microbiol ; 149(1): 4-18, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21320731

ABSTRACT

Members of the genus Bifidobacterium were first described over a century ago and were quickly associated with a healthy intestinal tract due to their numerical dominance in breast-fed babies as compared to bottle-fed infants. Health benefits elicited by bifidobacteria to its host, as supported by clinical trials, have led to their wide application as probiotic components of health-promoting foods, especially in fermented dairy products. However, the relative paucity of genetic tools available for bifidobacteria has impeded development of a comprehensive molecular understanding of this genus. In this review we present a summary of current knowledge on bifidobacterial metabolism, classification, physiology and genetics and outline the currently available methods for genetically accessing and manipulating the genus.


Subject(s)
Bifidobacterium/classification , Bifidobacterium/metabolism , Bifidobacterium/genetics , Biotechnology , Breast Feeding , Female , Fermentation , Genomics , Humans , Infant , Intestinal Mucosa/metabolism , Intestines/microbiology , Probiotics/therapeutic use
18.
J Neurotrauma ; 27(7): 1265-74, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20486804

ABSTRACT

More than 85% of reported brain traumas are classified clinically as "mild" using the Glasgow Coma Scale (GCS); qualitative MRI findings are scarce and provide little correspondence to clinical symptoms. Our goal, therefore, was to establish in vivo sequelae of traumatic brain injury (TBI) following lower and higher levels of impact to the frontal lobe using quantitative MRI analysis and a mechanical model of penetrating impact injury. To investigate time-based morphological and physiological changes of living tissue requires a surrogate for the human central nervous system. The present model for TBI was a systematically varied and controlled cortical impact on deeply-anaesthetized Sprague-Dawley rats, that was designed to mimic different injury severities. Whole-brain MRI scans were performed on each rat prior to either a lower- or a higher-level of impact, and then at hourly intervals for 5 h post-impact. Both brain volume and specific anatomical structures were segmented from MR images for inter-subject comparisons post-registration. Animals subjected to lower and higher impact levels exhibited elevated intracranial pressure (ICP) in the low compensatory reserve (i.e., nearly exhausted), and terminal disturbance (i.e., exhausted) ranges, respectively. There was a statistically significant drop in cerebrospinal fluid (CSF) of 35% in the lower impacts, and 65% in the higher impacts, at 5 h compared to sham controls. There was a corresponding increase in corpus callosum volume starting at 1 h, of 60-110% and 30-40% following the lower- and higher-impact levels, respectively. A statistically significant change in the abnormal tissue from 2 h to 5 h was observed for both impact levels, with greater significance for higher impacts. Furthermore, a statistically significant difference between the lower impacts and the sham controls occurred at 3 h. These results are statistically substantiated by a fluctuation in the physical size of the corpus callosum, a decrease in the volume of CSF, and elevated levels of atrophy in the cerebral cortex.


Subject(s)
Brain Injuries/etiology , Brain Injuries/physiopathology , Brain/physiopathology , Cerebral Cortex/physiopathology , Magnetic Resonance Imaging/methods , Animals , Brain Edema/diagnosis , Brain Edema/etiology , Brain Edema/physiopathology , Brain Injuries/diagnosis , Cerebral Cortex/injuries , Disease Models, Animal , Disease Progression , Male , Organ Size/physiology , Rats , Rats, Sprague-Dawley , Time Factors
19.
Mol Ther ; 18(7): 1397-407, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20389288

ABSTRACT

Certain bacteria have emerged as biological gene vectors with natural tumor specificity, capable of specifically delivering genes or gene products to the tumor environment when intravenously (i.v.) administered to rodent models. We show for the first time that oral administration of bacteria to mice resulted in their translocation from the gastrointestinal tract (GIT) with subsequent homing to and replication specifically in tumors. The commensal, nonpathogenic Bifidobacterium breve UCC2003 harboring a plasmid expressing lux fed to mice bearing subcutaneous (s.c.) tumors were readily detected specifically in tumors, by live whole-body imaging, at levels similar to i.v. administration. Reporter gene expression was visible for >2 weeks in tumors. Mice remained healthy throughout experiments. Cytokine analyses indicated a significant upregulation of interferon-gamma (IFN-gamma) in the GIT of bifidobacteria-fed mice, which is associated with increases in epithelial permeability. However, B. breve feeding did not increase systemic levels of other commensal bacteria. The presence of tumor was not necessary for translocation to systemic organs to occur. These findings indicate potential for safe and efficient gene-based treatment and/or detection of tumors via ingestion of nonpathogenic bacteria expressing therapeutic or reporter genes.


Subject(s)
Bifidobacterium/genetics , Genetic Vectors/administration & dosage , Genetic Vectors/genetics , Melanoma, Experimental/metabolism , Administration, Oral , Animals , Bifidobacterium/immunology , Bifidobacterium/isolation & purification , Cytokines/metabolism , Enzyme Assays , Enzyme-Linked Immunosorbent Assay , Female , Flow Cytometry , Gastrointestinal Tract/microbiology , Genetic Vectors/immunology , Immunity, Cellular/immunology , Immunity, Humoral/immunology , Interferon-gamma/metabolism , Mice , Mice, Inbred C57BL , Mice, Nude , Polymerase Chain Reaction
20.
Hum Gene Ther ; 21(4): 405-16, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20105075

ABSTRACT

Bacteria-mediated transfer of plasmid DNA to mammalian cells (bactofection) has been shown to have significant potential as an approach to express heterologous proteins in various cell types. This is achieved through entry of the entire bacterium into cells, followed by release of plasmid DNA. In a murine model, we show that Listeria monocytogenes can invade and spread in tumors, and establish the use of Listeria to deliver genes to tumors in vivo. A novel approach to vector lysis and release of plasmid DNA through antibiotic administration was developed. Ampicillin administration facilitated both plasmid transfer and safety control of vector. To further improve on the gene delivery system, we selected a Listeria monocytogenes derivative that is more sensitive to ampicillin, and less pathogenic than the wild-type strain. Incorporation of a eukaryotic-transcribed lysin cassette in the plasmid further increased bacterial lysis. Successful gene delivery of firefly luciferase to growing tumors in murine models and to patient breast tumor samples ex vivo was achieved. The model described encompasses a three-phase treatment regimen, involving (1) intratumoral administration of vector followed by a period of vector spread, (2) systemic ampicillin administration to induce vector lysis and plasmid transfer, and (3) systemic administration of combined moxifloxacin and ampicillin to eliminate systemic vector. For the first time, our results reveal the potential of Listeria monocytogenes for in vivo gene delivery.


Subject(s)
Adenocarcinoma , Breast Neoplasms , Gene Transfer Techniques , Genetic Vectors/administration & dosage , Listeria monocytogenes/genetics , Plasmids/genetics , Adenocarcinoma/genetics , Adenocarcinoma/microbiology , Adenocarcinoma/therapy , Animals , Breast Neoplasms/genetics , Breast Neoplasms/microbiology , Breast Neoplasms/therapy , Caco-2 Cells/microbiology , Cell Line, Tumor , DNA, Bacterial/genetics , Female , Genetic Vectors/genetics , Genetic Vectors/metabolism , Humans , Listeria monocytogenes/pathogenicity , Listeriosis/microbiology , Luciferases/genetics , Luciferases/metabolism , Mice , Mice, Inbred BALB C , Mice, Nude
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