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1.
Nat Commun ; 11(1): 2691, 2020 06 01.
Article in English | MEDLINE | ID: mdl-32483136

ABSTRACT

Syntheses of carbonate chemistry spatial patterns are important for predicting ocean acidification impacts, but are lacking in coastal oceans. Here, we show that along the North American Atlantic and Gulf coasts the meridional distributions of dissolved inorganic carbon (DIC) and carbonate mineral saturation state (Ω) are controlled by partial equilibrium with the atmosphere resulting in relatively low DIC and high Ω in warm southern waters and the opposite in cold northern waters. However, pH and the partial pressure of CO2 (pCO2) do not exhibit a simple spatial pattern and are controlled by local physical and net biological processes which impede equilibrium with the atmosphere. Along the Pacific coast, upwelling brings subsurface waters with low Ω and pH to the surface where net biological production works to raise their values. Different temperature sensitivities of carbonate properties and different timescales of influencing processes lead to contrasting property distributions within and among margins.

2.
J Phys Chem B ; 111(32): 9651-4, 2007 Aug 16.
Article in English | MEDLINE | ID: mdl-17658743

ABSTRACT

The phenylalanine residues 300 and 309 in the enzyme tyrosine hydroxylase are known to aid in the positioning and binding of tetrahydrobiopterin (BH4) to the enzyme active site. The residues phenylalanine 254 and tyrosine 325 similarly aid in binding BH4 in phenylalanine hydroxylase. BH4 is a cofactor necessary for enzyme function, and mutations in these residues have been shown to cause a decrease in enzyme function. We examine the pairwise interactions between each aromatic residue and BH4 using second-order Moller Plesset theory and density functional theory to determine the amount of binding due to these aromatic residues. Further, we perform in silico point mutations of these residues to determine if several likely mutations can cause a decrease in protein function. Our results show that dispersion dominates these interactions, and electrostatics alone is not enough to bind the BH4.


Subject(s)
Biopterins/analogs & derivatives , Phenylalanine Hydroxylase/chemistry , Tyrosine 3-Monooxygenase/chemistry , Binding Sites , Biopterins/chemistry , Computer Simulation , Models, Molecular , Phenylalanine Hydroxylase/metabolism , Protein Binding , Tyrosine 3-Monooxygenase/metabolism
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