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1.
Mem Inst Oswaldo Cruz ; 109(4): 428-35, 2014 Jul.
Article in English | MEDLINE | ID: mdl-25075782

ABSTRACT

Viral acute gastroenteritis (AG) is a significant cause of hospitalisation in children younger than five years. Group A rotavirus (RVA) is responsible for 30% of these cases. Following the introduction of RVA immunisation in Brazil in 2006, a decreased circulation of this virus has been observed. However, AG remains an important cause of hospitalisation of paediatric patients and only limited data are available regarding the role of other enteric viruses in these cases. We conducted a prospective study of paediatric patients hospitalised for AG. Stool samples were collected to investigate human adenovirus (HAdV), RVA, norovirus (NoV) and astrovirus (AstV). NoV typing was performed by nucleotide sequencing and phylogenetic analysis. From the 225 samples tested, 60 (26%) were positive for at least one viral agent. HAdV, NoV, RVA and AstV were detected in 16%, 8%, 6% and 0% of the samples, respectively. Mixed infections were found in nine patients: HAdV/RVA (5), HAdV/NoV (3) and HAdV/NoV/RVA (1). The frequency of fever and lymphocytosis was significantly higher in virus-infected patients. Phylogenetic analysis of NoV indicated that all of these viruses belonged to genotype GII.4. The significant frequency of these pathogens in patients with AG highlights the need to routinely implement laboratory investigations.


Subject(s)
DNA Virus Infections/virology , Feces/virology , Gastroenteritis/virology , Acute Disease , Adenoviruses, Human/genetics , Adenoviruses, Human/isolation & purification , Brazil , Child , Genotype , Hospitalization , Humans , Mamastrovirus/genetics , Mamastrovirus/isolation & purification , Norovirus/genetics , Norovirus/isolation & purification , Phylogeny , Prospective Studies , RNA, Viral/genetics , Real-Time Polymerase Chain Reaction , Rotavirus/genetics , Rotavirus/isolation & purification , Seasons
2.
Mem. Inst. Oswaldo Cruz ; 109(4): 428-435, 03/07/2014. tab, graf
Article in English | LILACS | ID: lil-716303

ABSTRACT

Viral acute gastroenteritis (AG) is a significant cause of hospitalisation in children younger than five years. Group A rotavirus (RVA) is responsible for 30% of these cases. Following the introduction of RVA immunisation in Brazil in 2006, a decreased circulation of this virus has been observed. However, AG remains an important cause of hospitalisation of paediatric patients and only limited data are available regarding the role of other enteric viruses in these cases. We conducted a prospective study of paediatric patients hospitalised for AG. Stool samples were collected to investigate human adenovirus (HAdV), RVA, norovirus (NoV) and astrovirus (AstV). NoV typing was performed by nucleotide sequencing and phylogenetic analysis. From the 225 samples tested, 60 (26%) were positive for at least one viral agent. HAdV, NoV, RVA and AstV were detected in 16%, 8%, 6% and 0% of the samples, respectively. Mixed infections were found in nine patients: HAdV/RVA (5), HAdV/NoV (3) and HAdV/NoV/RVA (1). The frequency of fever and lymphocytosis was significantly higher in virus-infected patients. Phylogenetic analysis of NoV indicated that all of these viruses belonged to genotype GII.4. The significant frequency of these pathogens in patients with AG highlights the need to routinely implement laboratory investigations.


Subject(s)
Child , Humans , DNA Virus Infections/virology , Feces/virology , Gastroenteritis/virology , Acute Disease , Adenoviruses, Human/genetics , Adenoviruses, Human/isolation & purification , Brazil , Genotype , Hospitalization , Mamastrovirus/genetics , Mamastrovirus/isolation & purification , Norovirus/genetics , Norovirus/isolation & purification , Phylogeny , Prospective Studies , Real-Time Polymerase Chain Reaction , RNA, Viral/genetics , Rotavirus/genetics , Rotavirus/isolation & purification , Seasons
3.
J. pediatr. (Rio J.) ; J. pediatr. (Rio J.);89(3): 278-285, maio-jun. 2013. ilus, tab
Article in Portuguese | LILACS | ID: lil-679308

ABSTRACT

OBJETIVO: Descrever a variabilidade genotípica do rotavírus grupo A (RVA) encontrado em pacientes pediátricos imunocompetentes e imunocomprometidos tratados no Hospital de Clínicas/Universidade Federal do Paraná (HC/UFPR), Curitiba, Paraná. MÉTODOS: Foi realizado um estudo transversal com 1.140 amostras de fezes coletadas, de abril de 2001 a dezembro de 2008, em pacientes ambulatoriais e pacientes hospitalizados com gastroenterite aguda encaminhados ao hospital. As técnicas usadas foram o método da aglutinação do látex e imunoensaio enzimático para diagnóstico de RVA. Foi realizada transcrição reversa, seguida por PCR multiplex semi-nested e sequência de nucleotídeos para caracterização do genótipo. Foram relatados dados de combinações de genótipos, clínicos, epidemiológicos, laboratoriais e sobre a presença de infecções hospitalares. RESULTADOS: Foi analisado um total de 80 amostras de fezes positivas para rotavírus. As associações mais frequentes entre os genótipos G e P foram: G4 P[8] (38,9%), G1 P[8] (30,5%), G9 P[8] (13,9%), G2 P[4] (6.9 %) e G3 P[8] 1,4%). O genótipo prevalente foi G2 P[4] depois da implementação da vacina nos anos de 2006 e 2008. Verificou-se que um total de 62,5% das crianças com idade abaixo de 12 meses estavam infectadas. Destas, 55,6% tinham grave desidratação, e 26,7% precisaram de cuidados intensivos. Encontrou-se uma frequência de 12,5% de infecções hospitalares. Não se observou correlação entre o genótipo e a gravidade da infecção nos pacientes estudados. CONCLUSÃO: As infecções por RVA podem associar-se a manifestações clínicas graves e é crucial a vigilância da variabilidade genotípica desse vírus para monitorizar a emergência de novas cepas e o impacto da imunização nesses pacientes.


OBJECTIVE: To describe the genotypic variability of group A rotavirus (RVA) found in immunosuppressed and non-immunosuppressed pediatric patients treated at the Hospital de Clínicas da Universidade Federal do Paraná (HC-UFPR), Curitiba, Paraná. METHODS: A cross-sectional study was conducted with 1,140 stool samples collected from April, 2001 to December, 2008 in outpatients and hospitalized patients with acute gastroenteritis referred to the hospital. RVA diagnosis was performed through the latex agglutination method and enzyme immunoassay. Reverse transcription followed by multiplex hemi-nested polymerase chain reaction (PCR) and nucleotide sequencing were used for genotype characterization. Genotype combinations, clinical data, epidemiological data, laboratory data, and presence of hospital-acquired infections were reported. RESULTS: A total of 80 rotavirus-positive stool samples were analyzed. The most frequent associations between genotypes G and P were: G4 P[8] (38.9%), G1 P[8] (30.5%), G9 P[8] (13.9%), G2 P[4] (6.9%), and G3 P[8] (1.4%). G2 P[4] was the most prevalent genotype after the vaccine implementation in the years 2006 and 2008. A total of 62.5% of children aged less than 12 months were found to be infected. Of these, 55.6% had severe dehydration and 26.7% needed intensive care. A frequency of 12.5% of nosocomial infections was found. No correlation was observed between genotype and severity of infection in the study patients. CONCLUSION: RVA infections can be associated with severe clinical manifestations, and the surveillance of genotypic variability of this virus is crucial to monitor the emergence of new strains and the impact of the immunization in these patients.


Subject(s)
Female , Humans , Infant , Male , Genotype , Gastroenteritis/virology , Immune Tolerance , Immunocompromised Host , Rotavirus Infections/virology , Rotavirus/genetics , Brazil/epidemiology , Cross Infection/epidemiology , Enzyme-Linked Immunosorbent Assay , Epidemiologic Methods , Feces/virology , Gastroenteritis/epidemiology , Gastroenteritis/immunology , Reverse Transcriptase Polymerase Chain Reaction , Rotavirus Infections/epidemiology , Rotavirus Infections/immunology , Rotavirus Vaccines/immunology , Rotavirus/classification , Seasons , Time Factors
4.
J Pediatr (Rio J) ; 89(3): 278-85, 2013.
Article in English | MEDLINE | ID: mdl-23684457

ABSTRACT

OBJECTIVE: To describe the genotypic variability of group A rotavirus (RVA) found in immunosuppressed and non-immunosuppressed pediatric patients treated at the Hospital de Clínicas da Universidade Federal do Paraná (HC-UFPR), Curitiba, Paraná. METHODS: A cross-sectional study was conducted with 1,140 stool samples collected from April, 2001 to December, 2008 in outpatients and hospitalized patients with acute gastroenteritis referred to the hospital. RVA diagnosis was performed through the latex agglutination method and enzyme immunoassay. Reverse transcription followed by multiplex hemi-nested polymerase chain reaction (PCR) and nucleotide sequencing were used for genotype characterization. Genotype combinations, clinical, epidemiological, laboratory data, and presence of hospital-acquired infections were reported. RESULTS: A total of 80 rotavirus-positive stool samples were analyzed. The most frequent associations between genotypes G and P were: G4 P[8] (38.9%), G1 P[8] (30.5%), G9 P[8] (13.9%), G2 P[4] (6.9%), and G3 P[8] (1.4%). G2 P[4] was the most prevalent genotype after the vaccine implementation in the years 2006 and 2008. A total of 62,5% of infected children were aged less than 12 months. Of these, 55.6% had severe dehydration and 26.7% needed intensive care. A frequency of 12.5% of nosocomial infections was found. No correlation was observed between genotype and severity of infection in the study patients. CONCLUSION: RVA infections can be associated with severe clinical manifestations, and the surveillance of genotypic variability of this virus is crucial to monitor the emergence of new strains and the impact of the immunization in these patients.


Subject(s)
Gastroenteritis/virology , Genotype , Immune Tolerance , Immunocompromised Host , Rotavirus Infections/virology , Rotavirus/genetics , Brazil/epidemiology , Cross Infection/epidemiology , Enzyme-Linked Immunosorbent Assay , Epidemiologic Methods , Feces/virology , Female , Gastroenteritis/epidemiology , Gastroenteritis/immunology , Humans , Infant , Male , Reverse Transcriptase Polymerase Chain Reaction , Rotavirus/classification , Rotavirus Infections/epidemiology , Rotavirus Infections/immunology , Rotavirus Vaccines/immunology , Seasons , Time Factors
5.
J Pediatr (Rio J) ; 87(6): 535-40, 2011.
Article in English | MEDLINE | ID: mdl-22170227

ABSTRACT

OBJECTIVE: To assess acute neurological complications and neurological sequelae of childhood acute bacterial meningitis in order to determine possible warning signs. METHODS: This retrospective study evaluated children with acute bacterial meningitis (between 1 month and 14 years of age) admitted between 2003 and 2006. RESULTS: Of the 44 patients studied, 17 (38.6%) had acute neurological complications. Seizure was the most frequent (31.8%) complication. Patients with acute neurological complications showed a higher frequency of lower neutrophil count (p = 0.03), seizure at admission (p < 0.01), and S. pneumoniae as the etiologic agent (p = 0.01). Risk factors for the development of acute neurological complications were S. pneumoniae (odds ratio [OR] = 6.4, confidence interval [CI] 1.7-24.7) and neutrophil count < 60% (p < 0.01). Of the 35 patients who were followed up, 14 had neurological sequelae (40%). Behavioral change (22.9%) was the most frequent sequela. Seizures at admission (OR = 5.6, CI 1.2-25.9), cerebrospinal fluid protein concentration > 200 mg/dL (p < 0.01), and cerebrospinal fluid glucose concentration/glycemia ratio (p < 0.01) were identified as risk variables for sequelae. CONCLUSION: Neutrophil count < 60%, seizure at admission, and S. pneumoniae as the etiologic agent were identified as warning signs for acute neurological complications, while protein levels, cerebrospinal fluid glucose concentration/glycemia ratio, and seizure at admission were seen as risk factors for neurological sequelae.


Subject(s)
Behavioral Symptoms/etiology , Glucose/cerebrospinal fluid , Meningitis, Pneumococcal/complications , Neutrophils/pathology , Seizures, Febrile/etiology , Acute Disease , Adolescent , Child , Child, Preschool , Epidemiologic Methods , Female , Humans , Infant , Male , Meningitis, Pneumococcal/microbiology , Meningitis, Pneumococcal/pathology , Risk Factors
6.
J. pediatr. (Rio J.) ; J. pediatr. (Rio J.);87(6): 535-540, nov.-dez. 2011. tab
Article in Portuguese | LILACS | ID: lil-623449

ABSTRACT

OBJETIVO: Estudo retrospectivo que visa avaliar as complicações neurológicas agudas e sequelas neurológicas das meningites bacterianas agudas na infância, a fim de determinar possíveis sinais de alerta. MÉTODOS: Foram avaliadas crianças (entre 1 mês e 14 anos) internadas entre 2003 e 2006, com meningite bacteriana aguda. RESULTADOS: Dos 44 pacientes incluídos, 17 (38,6%) apresentaram complicações neurológicas agudas, sendo crise convulsiva a mais frequente (31,8%). Os pacientes com complicações neurológicas agudas apresentaram com mais frequência: menor contagem de neutrófilos (p = 0,03), crise convulsiva na admissão (p < 0,01) e S. pneumoniae como agente etiológico (p = 0,01). Os fatores de risco para o desenvolvimento de complicações neurológicas agudas foram: S. pneumoniae [razão de chances (odds ratio, OR) = 6,4; intervalo de confiança (IC) 1,7-24,7] e contagem de neutrófilos < 60% (p < 0,01). De 35 pacientes seguidos ambulatorialmente, 14 apresentaram sequelas neurológicas (40%), sendo alteração comportamental a mais frequente. A ocorrência de crise convulsiva na internação (OR = 5,6; IC 1.2-25,9), proteinorraquia > 200 mg/dL (p < 0,01) e menor relação glicorraquia/glicemia (p < 0,01) foram identificadas como variáveis de risco para sequelas. CONCLUSÃO: Contagem de neutrófilos < 60%, crise convulsiva na admissão e S. pneumoniae como agente etiológico foram identificados como sinais de alerta para a ocorrência de complicação neurológica aguda, enquanto que proteinorraquia, menor relação glicorraquia/glicemia e crise convulsiva na internação foram observados como fatores de risco para a ocorrência de sequelas neurológicas.


OBJECTIVE: To assess acute neurological complications and neurological sequelae of childhood acute bacterial meningitis in order to determine possible warning signs. METHODS: This retrospective study evaluated children with acute bacterial meningitis (between 1 month and 14 years of age) admitted between 2003 and 2006. RESULTS: Of the 44 patients studied, 17 (38.6%) had acute neurological complications. Seizure was the most frequent (31.8%) complication. Patients with acute neurological complications showed a higher frequency of lower neutrophil count (p = 0.03), seizure at admission (p < 0.01), and S. pneumoniae as the etiologic agent (p = 0.01). Risk factors for the development of acute neurological complications were S. pneumoniae (odds ratio [OR] = 6.4, confidence interval [CI] 1.7-24.7) and neutrophil count < 60% (p < 0.01). Of the 35 patients who were followed up, 14 had neurological sequelae (40%). Behavioral change (22.9%) was the most frequent sequela. Seizures at admission (OR = 5.6, CI 1.2-25.9), cerebrospinal fluid protein concentration > 200 mg/dL (p < 0.01), and cerebrospinal fluid glucose concentration/glycemia ratio (p < 0.01) were identified as risk variables for sequelae. CONCLUSION: Neutrophil count < 60%, seizure at admission, and S. pneumoniae as the etiologic agent were identified as warning signs for acute neurological complications, while protein levels, cerebrospinal fluid glucose concentration/glycemia ratio, and seizure at admission were seen as risk factors for neurological sequelae.


Subject(s)
Adolescent , Child , Child, Preschool , Female , Humans , Infant , Male , Behavioral Symptoms/etiology , Glucose/cerebrospinal fluid , Meningitis, Pneumococcal/complications , Neutrophils/pathology , Seizures, Febrile/etiology , Acute Disease , Epidemiologic Methods , Meningitis, Pneumococcal/microbiology , Meningitis, Pneumococcal/pathology , Risk Factors
7.
Diagn Pathol ; 6: 101, 2011 Oct 24.
Article in English | MEDLINE | ID: mdl-22024147

ABSTRACT

BACKGROUND: The aim of this study was to compare histomorphometric changes and the results of immunohistochemical tests for VCAM, ICAM-1, CD4 and CD8 in normal placentas from HIV-seropositive pregnant women. METHODS: Samples of normal placentas were divided into 2 groups: healthy HIV-seronegative pregnant women (control group = C = 60) and HIV-seropositive women (experimental group = E = 57). Conventional histological sections were submitted to morphometric analysis and evaluated in terms of the immunohistochemical expression of ICAM-1, VCAM, CD4 and CD8. RESULTS: The villi in group E were smaller than those in group C. The median for the CD8+ T cell count was higher in group E than in group C (p = 0.03). Immunohistochemical expression of ICAM-1 was observed in 57% of the cases in group E, compared with 21% of those in group C (p = 0.001). There was no difference in VCAM expression or CD4+ cell counts between groups and no correlation between the data for antiretroviral therapy and morphometric or immunohistochemical data. CONCLUSIONS: The morphometric data showed that placentas of HIV-seropositive pregnant women tend to have smaller villi than those of seronegative women. In addition, immunohistochemical testing for infectious agents helped to identify cases that were positive for microorganisms (6/112) that routine pathological examination had failed to detect. The anti-p24 antibody had a limited ability to detect HIV viral protein in this study (2/57). Correlation of immunohistochemical expression of CD8+ T cells and ICAM-1 with the presence of HIV in the placenta revealed that those expressions can act as biomarkers of inflammatory changes. There was no correlation between the data for antiretroviral therapy and morphometric or immunohistochemical data.


Subject(s)
HIV Seropositivity/transmission , Infectious Disease Transmission, Vertical , Placenta/immunology , Placenta/metabolism , Placenta/microbiology , Pregnancy Complications, Infectious/pathology , Adult , Anti-Retroviral Agents/therapeutic use , Biomarkers/analysis , CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Cell Adhesion Molecules/analysis , Cell Adhesion Molecules/biosynthesis , Female , HIV Seropositivity/drug therapy , HIV Seropositivity/immunology , Humans , Immunohistochemistry , Infant, Newborn , Inflammation/immunology , Inflammation/metabolism , Inflammation/pathology , Intercellular Adhesion Molecule-1/analysis , Intercellular Adhesion Molecule-1/biosynthesis , Lymphocyte Count , Pregnancy , Pregnancy Complications, Infectious/immunology , Pregnancy Complications, Infectious/microbiology , T-Lymphocyte Subsets/immunology , Young Adult
8.
J. pediatr. (Rio J.) ; J. pediatr. (Rio J.);87(5): 419-424, set.-out. 2011. ilus, tab
Article in Portuguese | LILACS | ID: lil-604433

ABSTRACT

OBJETIVOS: Avaliar a soroprevalência de hepatite A (VHA) em crianças e adolescentes com idade entre 1 e 14 anos, e identificar fatores associados à infecção prévia. MÉTODO: Estudo epidemiológico transversal, realizado entre fevereiro e agosto de 2006, em Curitiba, Paraná, Brasil, e em sua região metropolitana. A análise laboratorial constituiu-se de pesquisa qualitativa de anticorpos totais para o VHA em amostra de sangue total. RESULTADOS: No estudo, 901 crianças e adolescentes foram incluídos. A distribuição por faixa etária foi: 237 (26,3 por cento) entre 1 e 4 anos; 313 (34,7 por cento) entre 5 e 9 anos; e 351 (39 por cento) entre 10 e 14 anos. A taxa de soroprevalência geral encontrada foi de 19,8 por cento, e por grupo etário foi de 3, 21,1 e 29,9 por cento (p < 0,01), respectivamente. Na análise multivariada, demonstrou-se que os fatores que, em conjunto, mantiveram associação positiva com as prevalências de anticorpos contra o VHA na população estudada foram: faixa etária de 5 a 9 e 10 a 14 anos, morar em casas com um ou mais habitantes por cômodo, frequentar refeitório comunitário e ter baixa renda per capita. CONCLUSÕES: Os resultados demonstraram uma baixa prevalência de anticorpos contra o VHA, o que justifica o uso de medidas profiláticas, que incluem a vacinação precoce.


OBJECTIVES: To determine the seroprevalence of hepatitis A (HAV) in children and adolescents aged 1 to 14 years, and to identify factors associated with a history of infection. METHOD: This was a cross-sectional epidemiological study, conducted form February to August 2006 in the city of Curitiba, Paraná, Brazil, and the surrounding municipalities (Greater Curitiba). Laboratory analysis comprised qualitative assay for total HAV antibodies in whole blood samples. RESULTS: A total of 901 children and adolescents were recruited for the study. Age distribution was as follows: 1 to 4 years, n = 237 (26.3 percent); 5 to 9 years, n = 313 (34.7 percent); and 10 to 14 years, n = 351 (39 percent). The global rate of seroprevalence was 19.8 percent, and seroprevalence rates by age group were 3 percent, 21.1 percent and 29.9 percent respectively (p < 0.01). Multivariate analysis demonstrated that the following factors, in combination, had a positive association with the prevalence rate of antibodies against HAV in the study population: age groups 5 to 9 and 10 to 14 years, living in a household with more than one inhabitant per room, shared eating area and low per capita income. CONCLUSIONS: The results show a low prevalence of antibodies against HAV, which justifies the use of prophylactic measures, including early vaccination.


Subject(s)
Adolescent , Child , Child, Preschool , Female , Humans , Infant , Male , Hepatitis A Antibodies/blood , Hepatitis A Virus, Human/immunology , Hepatitis A/epidemiology , Age Distribution , Brazil/epidemiology , Epidemiologic Methods , Hepatitis A/etiology , Hepatitis A/prevention & control , Mass Vaccination
9.
J Pediatr (Rio J) ; 87(5): 419-24, 2011.
Article in English, Portuguese | MEDLINE | ID: mdl-21842115

ABSTRACT

OBJECTIVES: To determine the seroprevalence of hepatitis A (HAV) in children and adolescents aged 1 to 14 years, and to identify factors associated with a history of infection. METHODS: This was a cross-sectional epidemiological study, conducted form February to August 2006 in the city of Curitiba, Paraná, Brazil, and the surrounding municipalities (Greater Curitiba). Laboratory analysis comprised qualitative assay for total HAV antibodies in whole blood samples. RESULTS: A total of 901 children and adolescents were recruited for the study. Age distribution was as follows: 1 to 4 years, n = 237 (26.3%); 5 to 9 years, n = 313 (34.7%); and 10 to 14 years, n = 351 (39%). The global rate of seroprevalence was 19.8%, and seroprevalence rates by age group were 3%, 21.1% and 29.9% respectively (p < 0.01). Multivariate analysis demonstrated that the following factors, in combination, had a positive association with the prevalence rate of antibodies against HAV in the study population: age groups 5 to 9 and 10 to 14 years, living in a household with more than one inhabitant per room, shared eating area and low per capita income. CONCLUSIONS: The results show a low prevalence of antibodies against HAV, which justifies the use of prophylactic measures, including early vaccination.


Subject(s)
Hepatitis A Antibodies/blood , Hepatitis A Virus, Human/immunology , Hepatitis A/epidemiology , Adolescent , Age Distribution , Brazil/epidemiology , Child , Child, Preschool , Epidemiologic Methods , Female , Hepatitis A/etiology , Hepatitis A/prevention & control , Humans , Infant , Male , Mass Vaccination
10.
J Clin Microbiol ; 49(4): 1287-93, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21248084

ABSTRACT

Community respiratory viruses (CRVs) are commonly associated with seasonal infections. They have been associated with higher morbidity and mortality among children, elderly individuals, and immunosuppressed patients. In April 2009, the circulation of a new influenza A virus (FLUA H1N1v) was responsible for the first influenza pandemic of this century. We report the clinical and epidemiological profiles of inpatients infected with CRVs or with FLUA H1N1v at a tertiary care hospital in southern Brazil. In addition, we used these profiles to evaluate survivor and nonsurvivor patients infected with FLUA H1N1v. Multiplex reverse transcription-PCR (RT-PCR) and real time RT-PCR were used to detect viruses in inpatients with respiratory infections. Record data from all patients were reviewed. A total of 171 patients were examined over a period of 16 weeks. Of these, 39% were positive for FLUA H1N1v, 36% were positive for CRVs, and 25% were negative. For the FLUA H1N1v- and CRV-infected patients, epidemiological data regarding median age (30 and 1.5 years), myalgia (44% and 13%), need for mechanical ventilation (44% and 9%), and mortality (35% and 9%) were statistically different. In a multivariate analysis comparing survivor and nonsurvivor patients infected with influenza A virus H1N1, median age and creatine phosphokinase levels were significantly associated with a severe outcome. Seasonal respiratory infections are a continuing concern. Our results highlight the importance of studies on the prevalence and severity of these infections and that investments in programs of clinical and laboratory monitoring are essential to detect the appearance of new infective agents.


Subject(s)
Clinical Laboratory Techniques , Influenza, Human/epidemiology , Influenza, Human/virology , Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/virology , Virology/methods , Adolescent , Adult , Brazil/epidemiology , Community-Acquired Infections/epidemiology , Community-Acquired Infections/mortality , Community-Acquired Infections/virology , Female , Humans , Influenza A Virus, H1N1 Subtype/isolation & purification , Influenza, Human/mortality , Male , Polymerase Chain Reaction/methods , Respiratory Tract Infections/mortality , Reverse Transcriptase Polymerase Chain Reaction/methods , Treatment Outcome , Young Adult
11.
Rev. Inst. Med. Trop. Säo Paulo ; Rev. Inst. Med. Trop. Säo Paulo;52(6): 317-321, Nov.-Dec. 2010. graf, tab
Article in English | LILACS | ID: lil-570730

ABSTRACT

Adenovirus (AdV) respiratory infections are usually described as being associated with high mortality rates. Laboratory diagnosis is essential for the establishment of the appropriate therapy, and for guiding the implementation of preventive measures in order to prevent the spread of the infection. Aiming to analyze the sensitivity and specificity of the laboratorial diagnosis methods available, we compared antigen detection by indirect immunofluorescence assay (IF), and a specific nested polymerase chain reaction (PCR), to detect AdV in respiratory samples collected from patients admitted to hospital with acute respiratory disease. Positive samples were inoculated into a cell culture to confirm the results. We analyzed 381 samples from the nasopharyngeal aspirates collected during the year 2008; of these, 2.6 percent tested were positive for adenovirus through IF and 10 percent through PCR; positive isolation was obtained in 40 percent and 26 percent of these cases, respectively. Most infected patients were children under six months of age, and despite of the fact that a significant number of patients required intensive care, the mortality rate was low (5 percent). In conclusion, molecular methods were found to be useful for rapid diagnosis of adenovirus infections with higher sensitivity than antigen detection; their introduction permitted a significant increase in diagnoses of adenovirus infections.


Infecções respiratórias por Adenovírus (ADV) são geralmente descritas associadas com alta mortalidade. O diagnóstico laboratorial é essencial para o estabelecimento da terapêutica adequada e para orientar a implantação de medidas preventivas evitando a propagação da infecção. Com o objetivo de analisar a sensibilidade e a especificidade dos métodos de avaliação de diagnóstico laboratorial, foi comparada a detecção de antígeno por imunofluorescência indireta (IF) com a reação em cadeia da polimerase específica (PCR) para detectar AdV em amostras respiratórias coletadas de pacientes internados com doença respiratória aguda. As amostras com resultados positivos foram inoculadas em cultura celular. Foram analisadas 381 amostras da secreção nasofaríngea coletadas durante o ano de 2008, das quais 2,6 por cento foram positivas pela IF e 10 por cento pela PCR, isolamento positivo foi obtido em 40 por cento e 26 por cento dos casos positivos pelos testes anteriores, respectivamente. A maioria dos pacientes infectados eram crianças com menos de seis meses de idade, e apesar do fato de que um número significativo de pacientes necessitou de cuidados intensivos, a taxa de mortalidade foi baixa (5 por cento). Em conclusão, os métodos moleculares são úteis para o diagnóstico rápido de infecções por adenovírus com maior sensibilidade do que a detecção do antígeno, a sua introdução na rotina permitiu um aumento significativo no diagnóstico de infecções por adenovírus.


Subject(s)
Child , Child, Preschool , Humans , Infant , Adenoviruses, Human , Adenovirus Infections, Human/diagnosis , Nasopharynx/virology , Respiratory Tract Infections/diagnosis , Respiratory Tract Infections/virology , Adenoviruses, Human/genetics , Adenoviruses, Human/immunology , Adenoviruses, Human/isolation & purification , Cross-Sectional Studies , Fluorescent Antibody Technique, Indirect , Polymerase Chain Reaction , Prospective Studies , Sensitivity and Specificity
12.
Rev Inst Med Trop Sao Paulo ; 52(6): 317-21, 2010.
Article in English | MEDLINE | ID: mdl-21225215

ABSTRACT

Adenovirus (AdV) respiratory infections are usually described as being associated with high mortality rates. Laboratory diagnosis is essential for the establishment of the appropriate therapy, and for guiding the implementation of preventive measures in order to prevent the spread of the infection. Aiming to analyze the sensitivity and specificity of the laboratorial diagnosis methods available, we compared antigen detection by indirect immunofluorescence assay (IF), and a specific nested polymerase chain reaction (PCR), to detect AdV in respiratory samples collected from patients admitted to hospital with acute respiratory disease. Positive samples were inoculated into a cell culture to confirm the results. We analyzed 381 samples from the nasopharyngeal aspirates collected during the year 2008; of these, 2.6% tested were positive for adenovirus through IF and 10% through PCR; positive isolation was obtained in 40% and 26% of these cases, respectively. Most infected patients were children under six months of age, and despite of the fact that a significant number of patients required intensive care, the mortality rate was low (5%). In conclusion, molecular methods were found to be useful for rapid diagnosis of adenovirus infections with higher sensitivity than antigen detection; their introduction permitted a significant increase in diagnoses of adenovirus infections.


Subject(s)
Adenovirus Infections, Human/diagnosis , Adenoviruses, Human , Nasopharynx/virology , Respiratory Tract Infections/diagnosis , Respiratory Tract Infections/virology , Adenoviruses, Human/genetics , Adenoviruses, Human/immunology , Adenoviruses, Human/isolation & purification , Child , Child, Preschool , Cross-Sectional Studies , Fluorescent Antibody Technique, Indirect , Humans , Infant , Polymerase Chain Reaction , Prospective Studies , Sensitivity and Specificity
13.
Rev. bras. anal. clin ; 36(2): 73-77, 2004. ilus
Article in Portuguese | LILACS | ID: lil-490785

ABSTRACT

As Escherichia coli Shiga Toxigênicas (STEC) são patógenos emergentes, causadores de diarréia e doenças graves como colite hemorrágica e síndrome hemolítico-urêmica. As STEC diferenciam-se das demais estirpes de E. Coli pela produção de um ou mais tipos de toxina denominadas toxina Shiga 1 e 2, codificadas pelos genes Stx1 e Stx2, respectivamente. O diagnóstico microbiológico das infecções causadas por STEC é dificultado pelo rápido decréscimo no número de organismos excretados nas fezes após o início dos sintomas e pela diversidade bioquímica e sorológica das estirpes de STEC. O objetivo deste trabalho é estabelecer um protocolo de PCR para a detecção de STEC que seja adequado para a rotina dos laboratórios clínicos. As culturas de estirpes de STEC e outros organismos usados como controles e das amostras de fezes diarréicas foram realizadas em ágar MacConkey e incubadas a 36ºC por 18-24 horas. A extração de DNA foi realizada pelo métoda da fervura. Na PCR foi utilizado um único par de iniciadores, ATACAGAGGGA/GGA/GATTTCGT e CC/ATGATGATGG/ACAATTCAG, capaz de detectar os genes Stx, Stx2 e seus variantes numa mesma reação através da ampliação de um fragmento de DNA de aproximadamente 220 pares de base (pb). A PCR foi realizada em volume de 50ml, contendo 10 ml de DNA, tampão Taq 1X; MgCl2, 1,5mM, dNTP 200mM, iniciadores 1mM cada, Taq DNA polimerase 2U. Empregou-se 1 ciclo de 94ºC por 5 minutos e 35 ciclos de 94ºC por 1 minuto, 47ºC por 30 segundos e 72ºC por 30 segundos, seguidos de 1 ciclo de 72ºC por 10 minutos. Os produtos de amplificação foram detectados através de eletroforese em gel de agarose a 2%. DNA extraído das estirpes de STEC O157:H7 (Stx1, Stx2) e O111 (Stx1) permitiu a amplificação de um fragmento de cerca de 220pb, mas nenhum produto de amplificação foi produzido quando o DNA de E. coli ATCC 25922 e de outros organismos controle não produtores de Stx foi utilizado. Foram analisadas 123 cultura de fezes e 3 apresentaram amplificação do fragmento de DNA de cerca de 220 pb, sugerindo a presença de Stx. O protocolo descrito neste trabalho mostrou-se sensível, específico e adequado ao laboratório clínico.


Subject(s)
Humans , Diarrhea/microbiology , Escherichia coli , Escherichia coli Infections , Feces/microbiology , Shiga Toxins
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