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1.
Plant Sci ; 332: 111696, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37019339

ABSTRACT

The establishment of the Legume-Rhizobia symbiosis is generally dependent on the production of rhizobial lipochitooligosaccharidic Nod factors (NFs) and their perception by plant Lysin Motif Receptor-Like Kinases (LysM-RLKs). In this study, we characterized a cluster of LysM-RLK genes implicated in strain-specific recognition in two highly divergent and widely-studied Medicago truncatula genotypes, A17 and R108. We then used reverse genetic approaches and biochemical analyses to study the function of selected genes in the clusters and the ability of their encoded proteins to bind NFs. Our study has revealed that the LYK cluster exhibits a high degree of variability among M. truncatula genotypes, which in A17 and R108 includes recent recombination events within the cluster and a transposon insertion in A17. The essential role of LYK3 in nodulation in A17 is not conserved in R108 despite similar sequences and good nodulation expression profiles. Although, LYK2, LYK5 and LYK5bis are not essential for nodulation of the two genotypes, some evidence points to accessory roles in nodulation, but not through high-affinity NF binding. This work shows that recent evolution in the LYK cluster provides a source of variation for nodulation, and potential robustness of signaling through genetic redundancy.


Subject(s)
Medicago truncatula , Medicago truncatula/genetics , Medicago truncatula/metabolism , Multigene Family , Symbiosis/genetics , Plant Proteins/genetics , Plant Proteins/metabolism
2.
Plant Cell Physiol ; 64(7): 746-757, 2023 Jul 17.
Article in English | MEDLINE | ID: mdl-37098213

ABSTRACT

Lysin motif receptor-like kinases (LysM-RLKs) are involved in the perception of chitooligosaccharides (COs) and related lipochitooligosaccharides (LCOs) in plants. Expansion and divergence of the gene family during evolution have led to various roles in symbiosis and defense. By studying proteins of the LYR-IA subclass of LysM-RLKs of the Poaceae, we show here that they are high-affinity LCO-binding proteins with a lower affinity for COs, consistent with a role in LCO perception to establish arbuscular mycorrhiza (AM). In Papilionoid legumes, whole-genome duplication has resulted in two LYR-IA paralogs, MtLYR1 and MtNFP in Medicago truncatula, with MtNFP playing an essential role in root nodule symbiosis with nitrogen-fixing rhizobia. We show that MtLYR1 has retained the ancestral LCO-binding characteristic and is dispensable for AM. Domain swapping between the three LysMs of MtNFP and MtLYR1 and mutagenesis in MtLYR1 suggest that the MtLYR1 LCO-binding site is on the second LysM and that divergence in MtNFP led to better nodulation, but surprisingly with decreased LCO binding. These results suggest that divergence of the LCO-binding site has been important for the evolution of a role of MtNFP in nodulation with rhizobia.


Subject(s)
Medicago truncatula , Mycorrhizae , Medicago truncatula/genetics , Medicago truncatula/metabolism , Plant Proteins/metabolism , Mycorrhizae/metabolism , Symbiosis/genetics , Chitin/metabolism
3.
Plant Physiol ; 190(2): 1400-1417, 2022 09 28.
Article in English | MEDLINE | ID: mdl-35876558

ABSTRACT

Intensive research on nitrogen-fixing symbiosis in two model legumes has uncovered the molecular mechanisms, whereby rhizobial Nod factors activate a plant symbiotic signaling pathway that controls infection and nodule organogenesis. In contrast, the so-called Nod-independent symbiosis found between Aeschynomene evenia and photosynthetic bradyrhizobia, which does not involve Nod factor recognition nor infection thread formation, is less well known. To gain knowledge on how Nod-independent symbiosis is established, we conducted a phenotypic and molecular characterization of A. evenia lines carrying mutations in different nodulation genes. Besides investigating the effect of the mutations on rhizobial symbiosis, we examined their consequences on mycorrhizal symbiosis and in nonsymbiotic conditions. Analyzing allelic mutant series for AePOLLUX, Ca2+/calmodulin dependent kinase, AeCYCLOPS, nodulation signaling pathway 2 (AeNSP2), and nodule inception demonstrated that these genes intervene at several stages of intercellular infection and during bacterial accommodation. We provide evidence that AeNSP2 has an additional nitrogen-dependent regulatory function in the formation of axillary root hairs at lateral root bases, which are rhizobia-colonized infection sites. Our investigation of the recently discovered symbiotic actor cysteine-rich receptor-like kinase specified that it is not involved in mycorrhization; however, it is essential for both symbiotic signaling and early infection during nodulation. These findings provide important insights on the modus operandi of Nod-independent symbiosis and contribute to the general understanding of how rhizobial-legume symbioses are established by complementing the information acquired in model legumes.


Subject(s)
Fabaceae , Rhizobium , Calcium/metabolism , Calcium-Calmodulin-Dependent Protein Kinases/metabolism , Calmodulin/metabolism , Cysteine/metabolism , Fabaceae/genetics , Fabaceae/metabolism , Nitrogen/metabolism , Nitrogen Fixation/genetics , Plant Root Nodulation/genetics , Root Nodules, Plant/metabolism , Symbiosis/genetics
4.
New Phytol ; 235(5): 1995-2007, 2022 09.
Article in English | MEDLINE | ID: mdl-35611584

ABSTRACT

Rhizobial lipochitooligosaccharidic Nod factors (NFs), specified by nod genes, are the primary determinants of host specificity in the legume-Rhizobia symbiosis. We examined the nodulation ability of Medicago truncatula cv Jemalong A17 and M. truncatula ssp. tricycla R108 with the Sinorhizobium meliloti nodF/nodL mutant, which produces modified NFs. We then applied genetic and functional approaches to study the genetic basis and mechanism of nodulation of R108 by this mutant. We show that the nodF/nodL mutant can nodulate R108 but not A17. Using genomics and reverse genetics, we identified a newly evolved, chimeric LysM receptor-like kinase gene in R108, LYK2bis, which is responsible for the phenotype and can allow A17 to gain nodulation with the nodF/nodL mutant. We found that LYK2bis is involved in nodulation by mutants producing nonO-acetylated NFs and interacts with the key receptor protein NFP. Many, but not all, natural S. meliloti and S. medicae strains tested require LYK2bis for efficient nodulation of R108. Our findings reveal that a newly evolved gene in R108, LYK2bis, extends nodulation specificity to mutants producing nonO-acetylated NFs and is important for nodulation by many natural Sinorhizobia. Evolution of this gene may present an adaptive advantage to allow nodulation by a greater variety of strains.


Subject(s)
Medicago truncatula , Rhizobium , Sinorhizobium meliloti , Medicago truncatula/genetics , Medicago truncatula/metabolism , Phenotype , Sinorhizobium meliloti/genetics , Symbiosis/genetics
5.
FEBS Lett ; 590(10): 1477-87, 2016 05.
Article in English | MEDLINE | ID: mdl-27129432

ABSTRACT

LYR3, LYK3, and NFP are lysin motif-containing receptor-like kinases (LysM-RLKs) from Medicago truncatula, involved in perception of symbiotic lipo-chitooligosaccharide (LCO) signals. Here, we show that LYR3, a high-affinity LCO-binding protein, physically interacts with LYK3, a key player regulating symbiotic interactions. In vitro, LYR3 is phosphorylated by the active kinase domain of LYK3. Fluorescence lifetime imaging/Förster resonance energy transfer (FLIM/FRET) experiments in tobacco protoplasts show that the interaction between LYR3 and LYK3 at the plasma membrane is disrupted or inhibited by addition of LCOs. Moreover, LYR3 attenuates the cell death response, provoked by coexpression of NFP and LYK3 in tobacco leaves.


Subject(s)
Lipopolysaccharides/metabolism , Medicago truncatula/metabolism , Protein Kinases/metabolism , Protoplasts/metabolism , Cell Membrane/metabolism , Fluorescence Resonance Energy Transfer , Medicago truncatula/chemistry , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Protein Binding , Protein Kinases/chemistry , Protein Kinases/genetics , Symbiosis , Nicotiana/genetics , Nicotiana/metabolism
6.
Biochem J ; 473(10): 1369-78, 2016 05 15.
Article in English | MEDLINE | ID: mdl-26987814

ABSTRACT

LYR3 [LysM (lysin motif) receptor-like kinase 3] of Medicago truncatula is a high-affinity binding protein for symbiotic LCO (lipo-chitooligosaccharide) signals, produced by rhizobia bacteria and arbuscular mycorrhizal fungi. The present study shows that LYR3 from several other legumes, but not from two Lupinus species which are incapable of forming the mycorrhizal symbiosis, bind LCOs with high affinity and discriminate them from COs (chitooligosaccharides). The biodiversity of these proteins and the lack of binding to the Lupinus proteins were used to identify features required for high-affinity LCO binding. Swapping experiments between each of the three LysMs of the extracellular domain of the M. truncatula and Lupinus angustifolius LYR3 proteins revealed the crucial role of the third LysM in LCO binding. Site-directed mutagenesis identified a tyrosine residue, highly conserved in all LYR3 LCO-binding proteins, which is essential for high-affinity binding. Molecular modelling suggests that it may be part of a hydrophobic tunnel able to accommodate the LCO acyl chain. The lack of conservation of these features in the binding site of plant LysM proteins binding COs provides a mechanistic explanation of how LCO recognition might differ from CO perception by structurally related LysM receptors.


Subject(s)
Chitin/analogs & derivatives , Medicago truncatula/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Chitin/metabolism , Chitosan , Lupinus/metabolism , Oligosaccharides , Plant Proteins/genetics , Protein Binding , Signal Transduction , Symbiosis/genetics , Symbiosis/physiology
7.
Plant Physiol ; 170(4): 2312-24, 2016 04.
Article in English | MEDLINE | ID: mdl-26839127

ABSTRACT

PUB1, an E3 ubiquitin ligase, which interacts with and is phosphorylated by the LYK3 symbiotic receptor kinase, negatively regulates rhizobial infection and nodulation during the nitrogen-fixing root nodule symbiosis in Medicago truncatula In this study, we show that PUB1 also interacts with and is phosphorylated by DOES NOT MAKE INFECTIONS 2, the key symbiotic receptor kinase of the common symbiosis signaling pathway, required for both the rhizobial and the arbuscular mycorrhizal (AM) endosymbioses. We also show here that PUB1 expression is activated during successive stages of root colonization by Rhizophagus irregularis that is compatible with its interaction with DOES NOT MAKE INFECTIONS 2. Through characterization of a mutant, pub1-1, affected by the E3 ubiquitin ligase activity of PUB1, we have shown that the ubiquitination activity of PUB1 is required to negatively modulate successive stages of infection and development of rhizobial and AM symbioses. In conclusion, PUB1 represents, to our knowledge, a novel common component of symbiotic signaling integrating signal perception through interaction with and phosphorylation by two key symbiotic receptor kinases, and downstream signaling via its ubiquitination activity to fine-tune both rhizobial and AM root endosymbioses.


Subject(s)
Medicago truncatula/metabolism , Medicago truncatula/microbiology , Mycorrhizae/physiology , Plant Proteins/metabolism , Rhizobium/physiology , Symbiosis , Ubiquitination , Colony Count, Microbial , Glomeromycota/physiology , Mycorrhizae/growth & development , Phosphorylation , Plant Proteins/chemistry , Protein Domains , Saccharomyces cerevisiae/metabolism , Ubiquitin-Protein Ligases/metabolism
8.
ACS Chem Biol ; 8(9): 1900-6, 2013 Sep 20.
Article in English | MEDLINE | ID: mdl-23808871

ABSTRACT

While chitooligosaccharides (COs) derived from fungal chitin are potent elicitors of defense reactions, structurally related signals produced by certain bacteria and fungi, called lipo-chitooligosaccharides (LCOs), play important roles in the establishment of symbioses with plants. Understanding how plants distinguish between friend and foe through the perception of these signals is a major challenge. We report the synthesis of a range of COs and LCOs, including photoactivatable probes, to characterize a membrane protein from the legume Medicago truncatula. By coupling photoaffinity labeling experiments with proteomics and transcriptomics, we identified the likely LCO-binding protein as LYR3, a lysin motif receptor-like kinase (LysM-RLK). LYR3, expressed heterologously, exhibits high-affinity binding to LCOs but not COs. Homology modeling, based on the Arabidopsis CO-binding LysM-RLK AtCERK1, suggests that LYR3 could accommodate the LCO in a conserved binding site. The identification of LYR3 opens up ways for the molecular characterization of LCO/CO discrimination.


Subject(s)
Chitin/analogs & derivatives , Medicago truncatula/physiology , Oligosaccharides/metabolism , Plant Proteins/metabolism , Amino Acid Sequence , Lipids/chemistry , Membrane Proteins/chemistry , Membrane Proteins/metabolism , Models, Molecular , Molecular Sequence Data , Oligosaccharides/chemistry , Plant Proteins/chemistry , Sequence Alignment , Symbiosis
9.
PLoS One ; 8(6): e65055, 2013.
Article in English | MEDLINE | ID: mdl-23750228

ABSTRACT

Receptor(-like) kinases with Lysin Motif (LysM) domains in their extracellular region play crucial roles during plant interactions with microorganisms; e.g. Arabidopsis thaliana CERK1 activates innate immunity upon perception of fungal chitin/chitooligosaccharides, whereas Medicago truncatula NFP and LYK3 mediate signalling upon perception of bacterial lipo-chitooligosaccharides, termed Nod factors, during the establishment of mutualism with nitrogen-fixing rhizobia. However, little is still known about the exact activation and signalling mechanisms of MtNFP and MtLYK3. We aimed at investigating putative molecular interactions of MtNFP and MtLYK3 produced in Nicotiana benthamiana. Surprisingly, heterologous co-production of these proteins resulted in an induction of defence-like responses, which included defence-related gene expression, accumulation of phenolic compounds, and cell death. Similar defence-like responses were observed upon production of AtCERK1 in N. benthamiana leaves. Production of either MtNFP or MtLYK3 alone or their co-production with other unrelated receptor(-like) kinases did not induce cell death in N. benthamiana, indicating that a functional interaction between these LysM receptor-like kinases is required for triggering this response. Importantly, structure-function studies revealed that the MtNFP intracellular region, specific features of the MtLYK3 intracellular region (including several putative phosphorylation sites), and MtLYK3 and AtCERK1 kinase activity were indispensable for cell death induction, thereby mimicking the structural requirements of nodulation or chitin-induced signalling. The observed similarity of N. benthamiana response to MtNFP and MtLYK3 co-production and AtCERK1 production suggests the existence of parallels between Nod factor-induced and chitin-induced signalling mediated by the respective LysM receptor(-like) kinases. Notably, the conserved structural requirements for MtNFP and MtLYK3 biological activity in M. truncatula (nodulation) and in N. benthamiana (cell death induction) indicates the relevance of the latter system for studies on these, and potentially other symbiotic LysM receptor-like kinases.


Subject(s)
Medicago truncatula/enzymology , Nicotiana/genetics , Nicotiana/immunology , Protein Kinases/biosynthesis , Protein Kinases/metabolism , Cell Death , Chitin/metabolism , Intracellular Space/enzymology , Lipopolysaccharides/metabolism , Medicago truncatula/genetics , Plant Leaves/cytology , Plant Leaves/genetics , Protein Binding , Protein Kinases/genetics , Signal Transduction , Nicotiana/cytology , Nicotiana/physiology
10.
New Phytol ; 198(3): 875-886, 2013 May.
Article in English | MEDLINE | ID: mdl-23432463

ABSTRACT

Plant LysM proteins control the perception of microbial-derived N-acetylglucosamine compounds for the establishment of symbiosis or activation of plant immunity. This raises questions about how plants, and notably legumes, can differentiate friends and foes using similar molecular actors and whether any receptors can intervene in both symbiosis and resistance. To study this question, nfp and lyk3 LysM-receptor like kinase mutants of Medicago truncatula that are affected in the early steps of nodulation, were analysed following inoculation with Aphanomyces euteiches, a root oomycete. The role of NFP in this interaction was further analysed by overexpression of NFP and by transcriptome analyses. nfp, but not lyk3, mutants were significantly more susceptible than wildtype plants to A. euteiches, whereas NFP overexpression increased resistance. Transcriptome analyses on A. euteiches inoculation showed that mutation in the NFP gene led to significant changes in the expression of c. 500 genes, notably involved in cell dynamic processes previously associated with resistance to pathogen penetration. nfp mutants also showed an increased susceptibility to the fungus Colletotrichum trifolii. These results demonstrate that NFP intervenes in M. truncatula immunity, suggesting an unsuspected role for NFP in the perception of pathogenic signals.


Subject(s)
Colletotrichum/pathogenicity , Host-Pathogen Interactions , Medicago truncatula/metabolism , Medicago truncatula/microbiology , Plant Proteins/metabolism , Aphanomyces/pathogenicity , Aphanomyces/physiology , Disease Resistance/genetics , Gene Expression Profiling , Gene Expression Regulation, Plant , Medicago truncatula/genetics , Mutation , Plant Diseases/genetics , Plant Diseases/microbiology , Plant Proteins/genetics , Plant Roots/metabolism , Plant Roots/microbiology , Plants, Genetically Modified , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Symbiosis/physiology
11.
J Biol Chem ; 287(14): 10812-23, 2012 Mar 30.
Article in English | MEDLINE | ID: mdl-22334694

ABSTRACT

The lysin motif receptor-like kinase, NFP (Nod factor perception), is a key protein in the legume Medicago truncatula for the perception of lipochitooligosaccharidic Nod factors, which are secreted bacterial signals essential for establishing the nitrogen-fixing legume-rhizobia symbiosis. Predicted structural and genetic analyses strongly suggest that NFP is at least part of a Nod factor receptor, but few data are available about this protein. Characterization of a variant encoded by the mutant allele nfp-2 revealed the sensitivity of this protein to the endoplasmic reticulum quality control mechanisms, affecting its trafficking to the plasma membrane. Further analysis revealed that the extensive N-glycosylation of the protein is not essential for biological activity. In the NFP extracellular region, two CXC motifs and two other Cys residues were found to be involved in disulfide bridges, and these are necessary for correct folding and localization of the protein. Analysis of the intracellular region revealed its importance for biological activity but suggests that it does not rely on kinase activity. This work shows that NFP trafficking to the plasma membrane is highly sensitive to regulation in the endoplasmic reticulum and has identified structural features of the protein, particularly disulfide bridges involving CXC motifs in the extracellular region that are required for its biological function.


Subject(s)
Cell Membrane/metabolism , Medicago truncatula/cytology , Medicago truncatula/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Amino Acid Motifs , Binding Sites , Conserved Sequence , Endoplasmic Reticulum/metabolism , Glycosylation , Lysine , Medicago truncatula/physiology , Models, Molecular , Plant Root Nodulation , Protein Conformation , Protein Processing, Post-Translational , Protein Transport , Signal Transduction
12.
Proc Natl Acad Sci U S A ; 108(49): 19824-9, 2011 Dec 06.
Article in English | MEDLINE | ID: mdl-22106285

ABSTRACT

Recognition of microbial patterns by host pattern recognition receptors is a key step in immune activation in multicellular eukaryotes. Peptidoglycans (PGNs) are major components of bacterial cell walls that possess immunity-stimulating activities in metazoans and plants. Here we show that PGN sensing and immunity to bacterial infection in Arabidopsis thaliana requires three lysin-motif (LysM) domain proteins. LYM1 and LYM3 are plasma membrane proteins that physically interact with PGNs and mediate Arabidopsis sensitivity to structurally different PGNs from gram-negative and gram-positive bacteria. lym1 and lym3 mutants lack PGN-induced changes in transcriptome activity patterns, but respond to fungus-derived chitin, a pattern structurally related to PGNs, in a wild-type manner. Notably, lym1, lym3, and lym3 lym1 mutant genotypes exhibit supersusceptibility to infection with virulent Pseudomonas syringae pathovar tomato DC3000. Defects in basal immunity in lym3 lym1 double mutants resemble those observed in lym1 and lym3 single mutants, suggesting that both proteins are part of the same recognition system. We further show that deletion of CERK1, a LysM receptor kinase that had previously been implicated in chitin perception and immunity to fungal infection in Arabidopsis, phenocopies defects observed in lym1 and lym3 mutants, such as peptidoglycan insensitivity and enhanced susceptibility to bacterial infection. Altogether, our findings suggest that plants share with metazoans the ability to recognize bacterial PGNs. However, as Arabidopsis LysM domain proteins LYM1, LYM3, and CERK1 form a PGN recognition system that is unrelated to metazoan PGN receptors, we propose that lineage-specific PGN perception systems have arisen through convergent evolution.


Subject(s)
Arabidopsis Proteins/metabolism , Bacteria/metabolism , Peptidoglycan/metabolism , Protein Serine-Threonine Kinases/metabolism , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis/microbiology , Arabidopsis Proteins/classification , Arabidopsis Proteins/genetics , Bacteria/growth & development , Bacteria/immunology , Disease Resistance/genetics , Disease Resistance/immunology , Gene Expression Regulation, Plant , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Host-Pathogen Interactions/immunology , Immunoblotting , Microscopy, Confocal , Mutation , Oligonucleotide Array Sequence Analysis , Peptidoglycan/immunology , Phylogeny , Plant Diseases/genetics , Plant Diseases/immunology , Plant Diseases/microbiology , Plants, Genetically Modified , Protein Serine-Threonine Kinases/genetics , Pseudomonas syringae/immunology , Pseudomonas syringae/metabolism , Pseudomonas syringae/physiology , Reverse Transcriptase Polymerase Chain Reaction , Staphylococcus aureus/immunology , Staphylococcus aureus/metabolism , Staphylococcus aureus/physiology , Transcriptome
13.
Plant Signal Behav ; 6(5): 660-4, 2011 May.
Article in English | MEDLINE | ID: mdl-21543887

ABSTRACT

In plants, as in animals, recent work has established that many developmental and defence response pathways are regulated by E3 ubiquitin ligases which control the level or the activity of key proteins through ubiquitination. Nodule formation is a tightly regulated process that integrates specific signal exchange and the coordinated activation of developmental mechanisms to synchronize bacterial infection and organ development. In the last decade, the characterization of several E3 ubiquitin ligase with roles during nodulation has been reported. These are mainly RING-finger and U-Box proteins involved either in nodule organogenesis or in the infection process. In this review, we summarize the knowledge in this field and conclude that the major challenge will be the identification of the regulation and targets of these E3 ubiquitin ligases.


Subject(s)
Plant Root Nodulation , Plants/enzymology , Ubiquitin-Protein Ligases/metabolism , Ubiquitin-Protein Ligases/chemistry
14.
Mol Plant Microbe Interact ; 24(8): 867-78, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21469937

ABSTRACT

The arbuscular mycorrhizal (AM) and the rhizobia-legume (RL) root endosymbioses are established as a result of signal exchange in which there is mutual recognition of diffusible signals produced by plant and microbial partners. It was discovered 20 years ago that the key symbiotic signals produced by rhizobial bacteria are lipo-chitooligosaccharides (LCO), called Nod factors. These LCO are perceived via lysin-motif (LysM) receptors and activate a signaling pathway called the common symbiotic pathway (CSP), which controls both the RL and the AM symbioses. Recent work has established that an AM fungus, Glomus intraradices, also produces LCO that activate the CSP, leading to induction of gene expression and root branching in Medicago truncatula. These Myc-LCO also stimulate mycorrhization in diverse plants. In addition, work on the nonlegume Parasponia andersonii has shown that a LysM receptor is required for both successful mycorrhization and nodulation. Together these studies show that structurally related signals and the LysM receptor family are key components of both nodulation and mycorrhization. LysM receptors are also involved in the perception of chitooligosaccharides (CO), which are derived from fungal cell walls and elicit defense responses and resistance to pathogens in diverse plants. The discovery of Myc-LCO and a LysM receptor required for the AM symbiosis, therefore, not only raises questions of how legume plants discriminate fungal and bacterial endosymbionts but also, more generally, of how plants discriminate endosymbionts from pathogenic microorganisms using structurally related LCO and CO signals and of how these perception mechanisms have evolved.


Subject(s)
Mycorrhizae/metabolism , Oligosaccharides/metabolism , Plants/metabolism , Plants/microbiology , Gene Expression Regulation, Plant/physiology , Plant Roots/metabolism , Plant Roots/microbiology , Signal Transduction
15.
J Biol Chem ; 286(13): 11202-10, 2011 Apr 01.
Article in English | MEDLINE | ID: mdl-21205819

ABSTRACT

Phylogenetic analysis has previously shown that plant receptor-like kinases (RLKs) are monophyletic with respect to the kinase domain and share an evolutionary origin with the animal interleukin-1 receptor-associated kinase/Pelle-soluble kinases. The lysin motif domain-containing receptor-like kinase-3 (LYK3) of the legume Medicago truncatula shows 33% amino acid sequence identity with human IRAK-4 over the kinase domain. Using the structure of this animal kinase as a template, homology modeling revealed that the plant RLK contains structural features particular to this group of kinases, including the tyrosine gatekeeper and the N-terminal extension α-helix B. Functional analysis revealed the importance of these conserved features for kinase activity and suggests that kinase activity is essential for the biological role of LYK3 in the establishment of the root nodule nitrogen-fixing symbiosis with rhizobia bacteria. The kinase domain of LYK3 has dual serine/threonine and tyrosine specificity, and mass spectrometry analysis identified seven serine, eight threonine, and one tyrosine residue as autophosphorylation sites in vitro. Three activation loop serine/threonine residues are required for biological activity, and molecular dynamics simulations suggest that Thr-475 is the prototypical phosphorylated residue that interacts with the conserved arginine in the catalytic loop, whereas Ser-471 and Thr-472 may be secondary sites. A threonine in the juxtamembrane region and two threonines in the C-terminal lobe of the kinase domain are important for biological but not kinase activity. We present evidence that the structure-function similarities that we have identified between LYK3 and IRAK-4 may be more widely applicable to plant RLKs in general.


Subject(s)
Interleukin-1 Receptor-Associated Kinases/chemistry , Medicago truncatula/enzymology , Models, Molecular , Plant Proteins/chemistry , Plant Roots/enzymology , Enzyme Activation/genetics , Humans , Interleukin-1 Receptor-Associated Kinases/genetics , Interleukin-1 Receptor-Associated Kinases/metabolism , Medicago truncatula/genetics , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/genetics , Protein Structure, Secondary , Structural Homology, Protein , Structure-Activity Relationship
16.
Plant Cell ; 22(10): 3474-88, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20971894

ABSTRACT

LYK3 is a lysin motif receptor-like kinase of Medicago truncatula, which is essential for the establishment of the nitrogen-fixing, root nodule symbiosis with Sinorhizobium meliloti. LYK3 is a putative receptor of S. meliloti Nod factor signals, but little is known of how it is regulated and how it transduces these symbiotic signals. In a screen for LYK3-interacting proteins, we identified M. truncatula Plant U-box protein 1 (PUB1) as an interactor of the kinase domain. In planta, both proteins are localized and interact in the plasma membrane. In M. truncatula, PUB1 is expressed specifically in symbiotic conditions, is induced by Nod factors, and shows an overlapping expression pattern with LYK3 during nodulation. Biochemical studies show that PUB1 has a U-box-dependent E3 ubiquitin ligase activity and is phosphorylated by the LYK3 kinase domain. Overexpression and RNA interference studies in M. truncatula show that PUB1 is a negative regulator of the LYK3 signaling pathway leading to infection and nodulation and is important for the discrimination of rhizobia strains producing variant Nod factors. The potential role of PUB E3 ubiquitin ligases in controlling plant-microbe interactions and development through interacting with receptor-like kinases is discussed.


Subject(s)
Medicago truncatula/genetics , Plant Proteins/metabolism , Plant Root Nodulation/genetics , Ubiquitin-Protein Ligases/metabolism , Gene Expression Regulation, Plant , Medicago truncatula/enzymology , Molecular Sequence Data , Plant Proteins/genetics , Plants, Genetically Modified/enzymology , Plants, Genetically Modified/genetics , RNA Interference , Signal Transduction , Sinorhizobium meliloti/physiology , Symbiosis/genetics , Nicotiana/enzymology , Nicotiana/genetics , Two-Hybrid System Techniques , Ubiquitin-Protein Ligases/genetics
17.
BMC Plant Biol ; 10: 183, 2010 Aug 19.
Article in English | MEDLINE | ID: mdl-20723225

ABSTRACT

BACKGROUND: Nitrogen is a crucial nutrient that is both essential and rate limiting for plant growth and seed production. Glutamine synthetase (GS), occupies a central position in nitrogen assimilation and recycling, justifying the extensive number of studies that have been dedicated to this enzyme from several plant sources. All plants species studied to date have been reported as containing a single, nuclear gene encoding a plastid located GS isoenzyme per haploid genome. This study reports the existence of a second nuclear gene encoding a plastid located GS in Medicago truncatula. RESULTS: This study characterizes a new, second gene encoding a plastid located glutamine synthetase (GS2) in M. truncatula. The gene encodes a functional GS isoenzyme with unique kinetic properties, which is exclusively expressed in developing seeds. Based on molecular data and the assumption of a molecular clock, it is estimated that the gene arose from a duplication event that occurred about 10 My ago, after legume speciation and that duplicated sequences are also present in closely related species of the Vicioide subclade. Expression analysis by RT-PCR and western blot indicate that the gene is exclusively expressed in developing seeds and its expression is related to seed filling, suggesting a specific function of the enzyme associated to legume seed metabolism. Interestingly, the gene was found to be subjected to alternative splicing over the first intron, leading to the formation of two transcripts with similar open reading frames but varying 5' UTR lengths, due to retention of the first intron. To our knowledge, this is the first report of alternative splicing on a plant GS gene. CONCLUSIONS: This study shows that Medicago truncatula contains an additional GS gene encoding a plastid located isoenzyme, which is functional and exclusively expressed during seed development. Legumes produce protein-rich seeds requiring high amounts of nitrogen, we postulate that this gene duplication represents a functional innovation of plastid located GS related to storage protein accumulation exclusive to legume seed metabolism.


Subject(s)
Gene Expression Regulation, Plant , Glutamate-Ammonia Ligase/genetics , Glutamate-Ammonia Ligase/metabolism , Medicago truncatula/enzymology , Medicago truncatula/genetics , Plastids/enzymology , Seeds/enzymology , Amino Acid Sequence , Gene Expression Profiling , Medicago truncatula/classification , Medicago truncatula/growth & development , Molecular Sequence Data , Mutation , Seeds/growth & development , Sequence Alignment
18.
Proc Natl Acad Sci U S A ; 107(5): 2343-8, 2010 Feb 02.
Article in English | MEDLINE | ID: mdl-20133878

ABSTRACT

Remorin proteins have been hypothesized to play important roles during cellular signal transduction processes. Induction of some members of this multigene family has been reported during biotic interactions. However, no roles during host-bacteria interactions have been assigned to remorin proteins until now. We used root nodule symbiosis between Medicago truncatula and Sinorhizobium meliloti to study the roles of a remorin that is specifically induced during nodulation. Here we show that this oligomeric remorin protein attaches to the host plasma membrane surrounding the bacteria and controls infection and release of rhizobia into the host cytoplasm. It interacts with the core set of symbiotic receptors that are essential for perception of bacterial signaling molecules, and thus might represent a plant-specific scaffolding protein.


Subject(s)
Carrier Proteins/physiology , Medicago truncatula/microbiology , Medicago truncatula/physiology , Phosphoproteins/physiology , Plant Proteins/physiology , Sinorhizobium meliloti/physiology , Symbiosis/physiology , Base Sequence , Carrier Proteins/genetics , DNA Primers/genetics , Medicago truncatula/genetics , Molecular Sequence Data , Mutation , Phosphoproteins/genetics , Plant Proteins/genetics , Plants, Genetically Modified , RNA Interference , Rhizobium/genetics , Signal Transduction , Transformation, Genetic
19.
Acta Biochim Pol ; 56(2): 199-210, 2009.
Article in English | MEDLINE | ID: mdl-19421430

ABSTRACT

Annexins belong to a family of multi-functional membrane- and Ca(2+)-binding proteins. The characteristic feature of these proteins is that they can bind membrane phospholipids in a reversible, Ca(2+)-dependent manner. While animal annexins have been known for a long time and are fairly well characterized, their plant counterparts were discovered only in 1989, in tomato, and have not been thoroughly studied yet. In the present review, we discuss the available information about plant annexins with special emphasis on biochemical and functional properties of some of them. In addition, we propose a link between annexins and symbiosis and Nod factor signal transduction in the legume plant, Medicago truncatula. A specific calcium response, calcium spiking, is an essential component of the Nod factor signal transduction pathway in legume plants. The potential role of annexins in the generation and propagation of this calcium signal is considered in this review. M. truncatula annexin 1 (MtAnn1) is a typical member of the plant annexin family, structurally similar to other members of the family. Expression of the MtAnn1 gene is specifically induced during symbiotic associations with both Sinorhizobium meliloti and the mycorrhizal fungus Glomus intraradices. Furthermore, it has been reported that the MtAnn1 protein is preferentially localized at the nuclear periphery of rhizobial-activated cortical cells, suggesting a possible role of this annexin in the calcium response signal elicited by symbiotic signals from rhizobia and mycorrhizal fungi.


Subject(s)
Annexins/physiology , Medicago truncatula/physiology , Mycorrhizae/physiology , Plant Proteins/physiology , Plant Root Nodulation/physiology , Amino Acid Sequence , Annexins/chemistry , Calcium-Binding Proteins/physiology , Medicago truncatula/microbiology , Membrane Proteins/physiology , Molecular Sequence Data , Sequence Alignment , Signal Transduction , Stress, Physiological/physiology , Symbiosis
20.
J Plant Physiol ; 165(7): 766-76, 2008 May 05.
Article in English | MEDLINE | ID: mdl-17728012

ABSTRACT

Branched 1,6-1,3-beta-glucans from Phytophthora sojae cell walls represent pathogen-associated molecular patterns (PAMPs) that have been shown to mediate the activation of plant defence reactions in many legumes. In soybean, a receptor protein complex containing a high affinity beta-glucan-binding protein (GBP) was identified and investigated in detail. In the model legume Medicago truncatula, used for functional genomic studies of various plant-microbe interactions, a high-affinity beta-glucan-binding site was characterized biochemically. However, to date, none of the genes encoding GBPs from M. truncatula have been described. Here, we report the identification of four full-length clones encoding putative beta-glucan-binding proteins from M. truncatula, MtGBP1, 2, 3, and 4, composing a multigene family encoding GBP-related proteins in this plant. Differences in expression patterns as well as in regulation on treatment with two different biotic elicitors are demonstrated for the members of the GBP family and for a selection of defence-related genes.


Subject(s)
Carrier Proteins/genetics , Lectins/genetics , Medicago truncatula/genetics , Multigene Family , beta-Glucans/metabolism , Amino Acid Sequence , Carrier Proteins/chemistry , Cells, Cultured , Conserved Sequence , Gene Expression Regulation, Plant , Lectins/chemistry , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Phylogeny , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction
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