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1.
J Biol Chem ; 274(7): 4115-23, 1999 Feb 12.
Article in English | MEDLINE | ID: mdl-9933605

ABSTRACT

The extensive glycosylation and conformational mobility of gp120, the envelope glycoprotein of type 1 human immunodeficiency virus (HIV-1), pose formidable barriers for crystallization. To surmount these difficulties, we used probability analysis to determine the most effective crystallization approach and derive equations which show that a strategy, which we term variational crystallization, substantially enhances the overall probability of crystallization for gp120. Variational crystallization focuses on protein modification as opposed to crystallization screening. Multiple variants of gp120 were analyzed with an iterative cycle involving a limited set of crystallization conditions and biochemical feedback on protease sensitivity, glycosylation status, and monoclonal antibody binding. Sources of likely conformational heterogeneity such as N-linked carbohydrates, flexible or mobile N and C termini, and variable internal loops were reduced or eliminated, and ligands such as CD4 and antigen-binding fragments (Fabs) of monoclonal antibodies were used to restrict conformational mobility as well as to alter the crystallization surface. Through successive cycles of manipulation involving 18 different variants, we succeeded in growing six different types of gp120 crystals. One of these, a ternary complex composed of gp120, its receptor CD4, and the Fab of the human neutralizing monoclonal antibody 17b, diffracts to a minimum Bragg spacing of at least 2.2 A and is suitable for structural analysis.


Subject(s)
HIV Envelope Protein gp120/chemistry , HIV-1 , Antibodies, Monoclonal , CD4 Antigens/chemistry , Crystallization , Glycosylation , Humans , Protein Conformation
2.
Proc Natl Acad Sci U S A ; 94(7): 2874-9, 1997 Apr 01.
Article in English | MEDLINE | ID: mdl-9096314

ABSTRACT

Varicella-zoster virus (VZV), an alpha-herpes virus, is the causative agent of chickenpox, shingles, and postherpetic neuralgia. The three-dimensional crystal structure of the serine protease from VZV has been determined at 3.0-A resolution. The VZV protease is essential for the life cycle of the virus and is a potential target for therapeutic intervention. The structure reveals an overall fold that is similar to that recently reported for the serine protease from cytomegalovirus (CMV), a herpes virus of the beta subfamily. The VZV protease structure provides further evidence to support the finding that herpes virus proteases have a fold and active site distinct from other serine proteases. The VZV protease catalytic triad consists of a serine and two histidines. The distal histidine is proposed to properly orient the proximal histidine. The identification of an alpha-helical segment in the VZV protease that was mostly disordered in the CMV protease provides a better definition of the postulated active site cavity and reveals an elastase-like S' region. Structural differences between the VZV and CMV proteases also suggest potential differences in their oligomerization states.


Subject(s)
Herpesvirus 3, Human/enzymology , Serine Endopeptidases/chemistry , Amino Acid Sequence , Catalysis , Crystallography, X-Ray , Molecular Sequence Data , Protein Conformation , Sequence Homology, Amino Acid , Serine Endopeptidases/metabolism , Substrate Specificity
3.
Nature ; 383(6597): 275-9, 1996 Sep 19.
Article in English | MEDLINE | ID: mdl-8805707

ABSTRACT

Human herpesviruses are responsible for a variety of diseases. They are divided into three subfamilies: alpha includes herpes simplex viruses (HSV-1 and HSV-2) and varicella-zoster virus (VZV); beta includes cytomegalovirus (CMV) and human herpesvirus-6 (HHV-6); and gamma includes Epstein-Barr virus (EBV). Each virus encodes a serine protease that is essential for its replication and is a potential target for therapeutic intervention. Human CMV is a ubiquitous opportunistic pathogen that can result in life-threatening infections in congenitally infected infants, immunocompromised individuals and immunosuppressed cancer or transplant patients. Here we report the crystal structure of human CMV protease at 2.5 angstroms resolution. The structure reveals a fold that has not been reported for any other serine protease, and an active site consisting of a novel catalytic triad in which the third member is a histidine instead of an aspartic acid, or possibly a catalytic tetrad consisting of a serine, two histidines and an aspartic acid. An unusual dimer interface that is important to the protease activity has also been identified.


Subject(s)
Cytomegalovirus/enzymology , Endopeptidases/chemistry , Endopeptidases/metabolism , Protein Folding , Serine Endopeptidases , Amino Acid Sequence , Binding Sites , Catalysis , Crystallography, X-Ray , Endopeptidases/genetics , Humans , Models, Molecular , Molecular Sequence Data , Mutagenesis , Protein Conformation
4.
Proc Natl Acad Sci U S A ; 92(4): 1222-6, 1995 Feb 14.
Article in English | MEDLINE | ID: mdl-7532306

ABSTRACT

The crystal structure of the reverse transcriptase (RT) from the type 1 human immunodeficiency virus has been determined at 3.2-A resolution. Comparison with complexes between RT and the polymerase inhibitor Nevirapine [Kohlstaedt, L.A., Wang, J., Friedman, J.M., Rice, P.A. & Steitz, T.A. (1992) Science 256, 1783-1790] and between RT and an oligonucleotide [Jacobo-Molina, A., Ding, J., Nanni, R., Clark, A. D., Lu, X., Tantillo, C., Williams, R. L., Kamer, G., Ferris, A. L., Clark, P., Hizi, A., Hughes, S. H. & Arnold, E. (1993) Proc. Natl. Acad. Sci. USA 90, 6320-6324] reveals changes associated with ligand binding. The enzyme is a heterodimer (p66/p51), with domains labeled "fingers," "thumb," "palm," and "connection" in both subunits, and a ribonuclease H domain in the larger subunit only. The most striking difference between RT and both complex structures is the change in orientation of the p66 thumb (approximately 33 degrees rotation). Smaller shifts relative to the core of the molecule were also found in other domains, including the p66 fingers and palm, which contain the polymerase active site. Within the polymerase catalytic region itself, there are no rearrangements between RT and the RT/DNA complex. In RT/Nevirapine, the drug binds in the p66 palm near the polymerase active site, a region that is well-packed hydrophobic core in the unliganded enzyme. Room for the drug is provided by movement of a small beta-sheet within the palm domain of the Nevirapine complex. The rearrangement within the palm and thumb, as well as domain shifts relative to the enzyme core, may prevent correct placement of the oligonucleotide substrate when the drug is bound.


Subject(s)
HIV-1/enzymology , RNA-Directed DNA Polymerase/chemistry , Binding Sites , Crystallography, X-Ray , DNA-Binding Proteins/chemistry , HIV Reverse Transcriptase , Nevirapine , Protein Conformation , Pyridines/chemistry , Reverse Transcriptase Inhibitors
5.
J Biol Chem ; 269(9): 6325-31, 1994 Mar 04.
Article in English | MEDLINE | ID: mdl-7509800

ABSTRACT

Inophyllums are novel non-nucleoside inhibitors of human immunodeficiency virus (HIV) type 1 reverse transcriptase identified through an enzyme screening program and isolated from the plant Calophyllum inophyllum. The kinetics of reverse transcriptase inhibition by inophyllum B were characterized using recombinant purified enzyme, a heteropolymeric RNA template, and a scintillation proximity assay. Preincubation of inhibitor with the enzyme-template-primer complex for 11 min was required for maximal inhibition of reverse transcriptase to occur, suggesting that inophyllum B had a slow on-rate and that template-primer must bind to reverse transcriptase prior to inhibitor binding. Inhibition of reverse transcriptase by inophyllums was shown to be reversible. When thymidine triphosphate was the variable substrate, inophyllum B inhibited reverse transcriptase noncompetitively with a Ki of 42 nM. Enzyme inhibition with respect to template-primer was uncompetitive with a Ki of 26 nM. Reverse transcriptase enzymes containing point mutations in which tyrosine 181 was changed to either cysteine or isoleucine exhibited marginal resistance to inophyllums but were resistant to (+)-(5S)-4,5,6,7-tetrahydro-9-chloro-5-methyl-6- (3-methyl-2-butenyl)-imidazo[4,5,1-j,k][1,4]benzodiazepin-2-(1H)-t hione (TIBO R82913). A mutant enzyme in which tyrosine 188 was changed to leucine was cross-resistant to both inophyllum B and TIBO R82913, as was HIV type 2 reverse transcriptase. These studies suggest that inophyllum B and TIBO R82913 bind to distinct but overlapping sites. Inhibition of avian myeloblastosis virus reverse transcriptase and Moloney murine leukemia virus reverse transcriptase by inophyllum B was detectible, suggesting that these inhibitors may be more promiscuous than other previously described non-nucleoside inhibitors. Inophyllums were active against HIV type 1 in cell culture with IC50 values of approximately 1.5 microM. These studies imply that the inophyllums have a novel mechanism of interaction with reverse transcriptase and as such could conceivably play a role in combination therapy.


Subject(s)
Antiviral Agents/pharmacology , Benzodiazepines/pharmacology , Coumarins/pharmacology , HIV-1/enzymology , Imidazoles/pharmacology , Mutagenesis, Site-Directed , Reverse Transcriptase Inhibitors , Base Sequence , Coumarins/chemistry , Coumarins/isolation & purification , HIV Reverse Transcriptase , Kinetics , Molecular Sequence Data , Oligodeoxyribonucleotides , RNA-Directed DNA Polymerase/biosynthesis , RNA-Directed DNA Polymerase/isolation & purification , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Structure-Activity Relationship , Substrate Specificity
6.
Biochemistry ; 32(48): 13054-60, 1993 Dec 07.
Article in English | MEDLINE | ID: mdl-8241159

ABSTRACT

Simian immunodeficiency virus (SIV) proteins have considerable amino acid sequence homology to those from human immunodeficiency virus (HIV); thus monkeys are considered useful models for the preclinical evaluation of acquired immune deficiency syndrome (AIDS) therapeutics. We have crystallized and determined the three-dimensional structure of SIV protease bound to the hydroxyethylene isostere inhibitor SKF107457. Crystals of the complex were grown from 25-32% saturated sodium chloride, by the hanging drop method of vapor diffusion. They belong to the orthorhombic space group I222, with a = 46.3 A, b = 101.5 A, and c = 118.8 A. The structure has been determined at 2.5-A resolution by molecular replacement and refined to a crystallographic discrepancy factor, R (= sigma parallel Fo magnitude of - magnitude of Fc parallel/sigma magnitude of Fo magnitude of), of 0.189. The overall structure of the complex is very similar to previously reported structures of HIV-1 protease bound to inhibitors. The inhibitor is bound in a conformation that is almost identical to that found for the same inhibitor bound to HIV-1 protease, except for an overall translation of the inhibitor, varying along the backbone atoms from about 1.0 A at the termini to about 0.5 A around the scissile bond surrogate. The structures of the SIV and HIV-1 proteins vary significantly only in three surface loops composed of amino acids 15-20, 34-45, and 65-70. Superposition of the 1188 protein backbone atoms from the two structures gives an rms deviation of 1.0 A; this number is reduced to 0.6 A when atoms from the three surface loops are eliminated from the rms calculation.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
Aspartic Acid Endopeptidases/ultrastructure , Simian Immunodeficiency Virus/enzymology , Amino Acid Sequence , Antiviral Agents/chemistry , Aspartic Acid Endopeptidases/antagonists & inhibitors , Aspartic Acid Endopeptidases/chemistry , Crystallography, X-Ray , HIV Protease Inhibitors/chemistry , Hydrogen Bonding , Molecular Sequence Data , Oligopeptides/pharmacology , Protein Structure, Secondary , Protein Structure, Tertiary , Recombinant Proteins , Sequence Alignment , Sequence Homology, Amino Acid
7.
Biochemistry ; 32(31): 7972-80, 1993 Aug 10.
Article in English | MEDLINE | ID: mdl-8347601

ABSTRACT

The human immunodeficiency virus type 1 (HIV-1) protease is a potential target of acquired immune deficiency syndrome (AIDS) therapy. A highly potent, perfectly symmetrical phosphinate inhibitor of this enzyme, SB204144, has been synthesized. It is a competitive inhibitor of HIV-1 protease, with an apparent inhibition constant of 2.8 nM at pH 6.0. The three-dimensional structure of SB204144 bound to the enzyme has been determined at 2.3-A resolution by X-ray diffraction techniques and refined to a crystallographic discrepancy factor, R (= sigma parallel F(o) magnitude to - Fc parallel/sigma magnitude of F(o)), of 0.178. The inhibitor is held in the enzyme active site by a set of hydrophobic and hydrophilic interactions, including an interaction between Arg8 and the center of the terminal benzene rings of the inhibitor. The phosphinate establishes a novel interaction with the two catalytic aspartates; each oxygen of the central phosphinic acid moiety interacts with a single oxygen of one aspartic acid, establishing a very short (2.2-2.4 A) oxygen-oxygen contact. As with the structures of penicillopepsin bound to phosphinate and phosphonate inhibitors [Fraser, M. E., Strynadka, N. C., Bartlett, P. A., Hanson, J. E., & James, M. N. (1992) Biochemistry 31, 5201-14], we interpret this short distance and the stereochemical environment of each pair of oxygens in terms of a hydrogen bond that has a symmetric single-well potential energy curve with the proton located midway between the two atoms.(ABSTRACT TRUNCATED AT 250 WORDS)


Subject(s)
HIV Protease Inhibitors/chemical synthesis , HIV-1/enzymology , Organophosphorus Compounds/chemical synthesis , Phosphinic Acids , Valine/analogs & derivatives , Amino Acid Sequence , Binding Sites , Catalysis/drug effects , Crystallization , HIV Protease/metabolism , HIV Protease Inhibitors/chemistry , HIV Protease Inhibitors/metabolism , Models, Molecular , Molecular Conformation , Molecular Sequence Data , Organophosphorus Compounds/chemistry , Organophosphorus Compounds/metabolism , Protein Binding , Recombinant Proteins/metabolism , Sugar Alcohols/chemistry , Valine/chemical synthesis , Valine/chemistry , Valine/metabolism , X-Ray Diffraction
8.
J Biol Chem ; 267(32): 22770-8, 1992 Nov 15.
Article in English | MEDLINE | ID: mdl-1429626

ABSTRACT

As part of a structure-based drug design program directed against enzyme targets in the human immunodeficiency virus (HIV), we have determined the three-dimensional structures of the HIV type 1 protease complexed with two hydroxyethylene-based inhibitors. The inhibitors (SKF 107457 and SKF 108738) are hexapeptide substrate analogues with the scissile bond being replaced by a hydroxyethylene isostere. The structures were determined using x-ray diffraction data to 2.2 A measured at the Cornell High Energy Synchrotron Source on hexagonal crystals of each of the complexes. The structures have been extensively refined using a reciprocal space least-squares method to conventional crystallographic R factors of 0.186 and 0.159, respectively. The protein structure differs from that in the unliganded state of the enzyme and is most similar to that of the structure of the other reported (Jaskolski, M., Tomasselli, A. G., Sawyer, T. K., Staples, D. G., Heinrikson, R. L., Schneider, J., Kent, S. B. H., and Wlodawer, A. (1990) Biochemistry 29, 5889-5907) hydroxyethylene-based inhibitor complex. Unlike in that structure, however, the inhibitors are observed, in the present crystal structures, in two equally abundant orientations that are a consequence of the homodimeric nature of the enzyme coupled with the asymmetric structures of the inhibitors. Although the differences between the two inhibitors used in the present study are confined to the P1' site, the van der Waals interactions made by the inhibitor atoms with the amino acid residues in the protein differ throughout the structures of the inhibitors.


Subject(s)
Ethylenes , HIV Protease Inhibitors/chemistry , HIV Protease Inhibitors/metabolism , HIV Protease/metabolism , Oligopeptides/metabolism , Amino Acid Sequence , Binding Sites , HIV Protease/chemistry , HIV-1/enzymology , Models, Molecular , Molecular Sequence Data , Oligopeptides/chemistry , Protein Conformation , Structure-Activity Relationship , X-Ray Diffraction/methods
9.
Biochemistry ; 31(39): 9491-501, 1992 Oct 06.
Article in English | MEDLINE | ID: mdl-1390732

ABSTRACT

The free energies of dimer dissociation of the retroviral proteases (PRs) of human immunodeficiency virus type 1 (HIV-1) and simian immunodeficiency virus (SIV) were determined by measuring the effects of denaturants on the protein fluorescence upon the unfolding of the enzymes. HIV-1 PR was more stable to denaturation by chaotropes and extremes of pH and temperature than SIV PR, indicating that the former enzyme has greater conformational stability. The urea unfolding curves of both proteases were sigmoidal and single phase. The midpoints of the transition curves increased with increasing protein concentrations. These data were best described by and fitted to a two-state model in which folded dimers were in equilibrium with unfolded monomers. This denaturation model conforms to cases in which protein unfolding and dimer dissociation are concomitant processes in which folded monomers do not exist [Bowie, J. U., & Sauer, R. T. (1989) Biochemistry 28, 7140-7143]. Accordingly, the free energies of unfolding reflect the stabilities of the protease dimers, which for HIV-1 PR and SIV PR were, respectively, delta GuH2O = 14 +/- 1 kcal/mol (Ku = 39 pM) and 13 +/- 1 kcal/mol (Ku = 180 pM). The binding of a tight-binding, competitive inhibitor greatly stabilized HIV-1 PR toward urea-induced unfolding (delta GuH2O = 19.3 +/- 0.7 kcal/mol, Ku = 7.0 fM). There were also profound effects caused by adverse pH on the protein conformation for both HIV-1 PR and SIV PR, resulting in unfolding at pH values above and below the respective optimal ranges of 4.0-8.0 and 4.0-7.0


Subject(s)
Aspartic Acid Endopeptidases/chemistry , HIV Protease/chemistry , HIV-1/enzymology , Simian Immunodeficiency Virus/enzymology , Aspartic Acid Endopeptidases/drug effects , Enzyme Stability/drug effects , HIV Protease/drug effects , Hot Temperature , Models, Chemical , Models, Molecular , Protein Conformation/drug effects , Protein Denaturation/drug effects , Protein Structure, Secondary/drug effects , Recombinant Proteins/chemistry , Recombinant Proteins/drug effects , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Thermodynamics , Ultracentrifugation , Urea/pharmacology
10.
Proc Natl Acad Sci U S A ; 88(22): 9989-93, 1991 Nov 15.
Article in English | MEDLINE | ID: mdl-1835093

ABSTRACT

Trans-activation by the adenovirus E1A 289R protein requires a zinc finger defined by Cys-154, Cys-157, Cys-171, and Cys-174. Whereas individually replacing the four cysteine residues with serines resulted in a loss of transactivation, only three of the Cys----Ser mutants (C157S, C171S, and C174S) lost the ability to bind Zn(II). X-ray absorption fine structure analysis revealed that, in the wild-type protein, Zn(II) is coordinated by four cysteine residues whereas in the C154S mutant, Zn(II) is coordinated by two histidines and two cysteines. The mutant protein probably retains, as ligands, two cysteines on the right side of the zinc finger (Cys-171 and Cys-174) and recruits two of the four histidines on the left side (His-149, His-152, His-158, and His-160), despite the presence of Cys-157. This finding may shed light on the general structural requirements of zinc fingers.


Subject(s)
Adenoviridae/genetics , Cysteine , DNA-Binding Proteins/genetics , Mutagenesis, Site-Directed , Oncogene Proteins, Viral/genetics , Zinc Fingers/genetics , Adenovirus Early Proteins , Amino Acid Sequence , Base Sequence , Binding Sites , Cloning, Molecular , Codon/genetics , Escherichia coli/genetics , HeLa Cells , Humans , Molecular Sequence Data , Plasmids , Protein Conformation , Transcriptional Activation , Transfection , Zinc/metabolism
11.
Biochemistry ; 30(34): 8441-53, 1991 Aug 27.
Article in English | MEDLINE | ID: mdl-1883830

ABSTRACT

The peptidolytic reaction of HIV-1 protease has been investigated by using four oligopeptide substrates, Ac-Ser-Gln-Asn-Tyr-Pro-Val-Val-NH2, Ac-Arg-Ala-Ser-Gln-Asn-Tyr-Pro-Val-Val-NH2, Ac-Ser-Gln-Ser-Tyr-Pro-Val-Val-NH2, and Ac-Arg-Lys-Ile-Leu-Phe-Leu-Asp-Gly-NH2, that resemble two cleavage sites found within the naturally occurring polyprotein substrates Pr55gag and Pr160gag-pol. The values for the kinetic parameters V/KEt and V/Et were 0.16-7.5 mM-1 s-1 and 0.24-29 s-1, respectively, at pH 6.0, 0.2 M NaCl, and 37 degrees C. By use of a variety of inorganic salts, it was concluded that the peptidolytic reaction is nonspecifically activated by increasing ionic strength. V/K increased in an apparently parabolic fashion with increasing ionic strength, while V was either increased or decreased slightly. From product inhibition studies, the kinetic mechanism of the protease is either random or ordered uni-bi, depending on the substrate studied. The reverse reaction or a partial reverse reaction (as measured by isotope exchange of the carboxylic product into substrate) was negligible for most of the oligopeptide substrates, but the enzyme catalyzed the formation of Ac-Ser-Gln-Asn-Tyr-Phe-Leu-Asp-Gly-NH2 from the products Ac-Ser-Gln-Asn-Tyr and Phe-Leu-Asp-Gly-NH2. The protease-catalyzed exchange of an atom of 18O from H2 18O into the re-formed substrates occurred at a rate which was 0.01-0.12 times that of the forward peptidolytic reaction. The results of these studies are in accord with the formation of a kinetically competent enzyme-bound amide hydrate intermediate, the collapse of which is the rate-limiting chemical step in the reaction pathway.


Subject(s)
HIV Protease/chemistry , Amino Acid Sequence , Binding Sites , Catalysis , Enzyme Activation , Kinetics , Molecular Sequence Data , Oligopeptides/chemistry , Oxygen Isotopes
12.
Biotechnology (N Y) ; 9(2): 173-7, 1991 Feb.
Article in English | MEDLINE | ID: mdl-1369452

ABSTRACT

We have established a stable, continuous culture Drosophila Schneider 2 cell line that efficiently expresses a secreted, truncated form of the HIV envelope gp120 protein in a regulated manner. The Drosophila produced recombinant gp120 protein is highly glycosylated, is recognized by gp120-specific monoclonal antibodies, binds to the CD4 receptor and has the ability to inhibit syncytia formation between uninfected CD4+ cells and HIV infected cells. We conclude that this recombinant Drosophila envelope protein is an appropriate mimic of the authentic viral envelope protein. Thus, the Drosophila cell provides a continuous, stable culture system for the efficient expression of secreted forms of complex surface glycoproteins in quantities sufficient for detailed analyses.


Subject(s)
Drosophila/genetics , Gene Expression Regulation/genetics , HIV Envelope Protein gp120/biosynthesis , Amino Acid Sequence , Animals , Antibodies, Monoclonal/immunology , CD4 Antigens/metabolism , CD4-Positive T-Lymphocytes/metabolism , Cell Line , Cloning, Molecular , Glycosylation , HIV Envelope Protein gp120/metabolism , HIV-1/growth & development , Humans , Molecular Sequence Data , Plasmids , Recombinant Proteins/biosynthesis
13.
Proc Natl Acad Sci U S A ; 88(2): 512-6, 1991 Jan 15.
Article in English | MEDLINE | ID: mdl-1899141

ABSTRACT

The envelope glycoprotein gp120 of primate immunodeficiency viruses initiates viral attachment to CD4+ cells by binding to the CD4 antigen on host cell surfaces. However, among different CD4+ cell types, different viruses display distinct host cell ranges and cytopathicities. Determinants for both of these biological properties have been mapped to the env gene. We have quantitatively compared the CD4 binding affinities of gp120 proteins from viruses exhibiting different host cell tropisms and cytopathicities. The viral proteins were produced by using a Drosophila cell expression system and were purified to greater than 90% homogeneity. Drosophila-produced gp120 from T-cell tropic human immunodeficiency virus type 1 (HIV-1) BH10 exhibits binding to soluble recombinant CD4 (sCD4) and syncytia inhibition potency identical to that of pure authentic viral gp120. Relative to the affinity of HIV-1 BH10 gp120 for sCD4, that of dual tropic HIV-1 Ba-L is 6-fold lower, that of restricted T-cell tropic simian immunodeficiency virus mac is 70-fold lower, and that of noncytopathic HIV-2 ST is greater than 280-fold lower. Thus, viruses that utilize CD4 for infection do so by using a remarkably wide range of envelope affinities. These differences in affinity may play a role in determining cell tropism and cytopathicity.


Subject(s)
CD4 Antigens/physiology , HIV Envelope Protein gp120/genetics , HIV-1/physiology , HIV-2/physiology , Amino Acid Sequence , Animals , Cell Line , Drosophila melanogaster , Genetic Vectors , HIV Envelope Protein gp120/metabolism , HIV-1/isolation & purification , HIV-2/isolation & purification , Humans , Kinetics , Molecular Sequence Data , Plasmids
14.
J Virol ; 63(4): 1569-77, 1989 Apr.
Article in English | MEDLINE | ID: mdl-2522558

ABSTRACT

The shift in mobility on sodium dodecyl sulfate-polyacrylamide gel electrophoresis that is characteristic of the adenovirus E1A proteins is the result of posttranslational modification. In the present study, we demonstrate that phosphorylation of bacterially produced E1A in higher cell extracts occurs on serine and is responsible for the mobility shift. E1A protein expressed in Saccharomyces cerevisiae also undergoes the mobility shift due to serine phosphorylation. Site-directed mutagenesis was used to identify the serine residue responsible for the mobility shift. Six serine residues were altered to glycine within E1A. Substitution at serine residue 89 was shown to selectively prevent the mobility shift of both the 289R and 243R E1A proteins. We conclude that phosphorylation at serine 89 is the specific modification responsible for the mobility shift of E1A. Moreover, we demonstrate that the Ser-89-to-Gly mutation has no effect on trans activation or complementation of an E1A-deficient adenovirus. In contrast, the mutant protein does significantly reduce both the repression and transformation efficiency of E1A. The five other Ser-to-Gly mutation were also examined for functional effects. None affected trans activation, whereas repression and transformation functions were affected. One mutant affected transformation without affecting repression, suggesting that these functions are to some degree also separable. The relevance of phosphorylation to structure and activity of E1A and other nuclear oncogene proteins is discussed.


Subject(s)
Oncogene Proteins, Viral/genetics , Adenovirus Early Proteins , Animals , Cell Transformation, Viral , DNA Mutational Analysis , Electrophoresis, Polyacrylamide Gel , Gene Expression Regulation , Humans , Mutation , Phosphorylation , Phosphoserine/physiology , Saccharomyces cerevisiae/genetics , Structure-Activity Relationship , Transcription, Genetic , Transfection , Xenopus laevis
15.
Proc Natl Acad Sci U S A ; 85(17): 6450-4, 1988 Sep.
Article in English | MEDLINE | ID: mdl-2970640

ABSTRACT

The E1A gene of adenovirus type 5 encodes two major proteins of 289 and 243 amino acid residues, which are identical except that the larger protein has an internal stretch of 46 amino acids required for efficient trans-activation of early viral promoters. This domain contains a consensus zinc finger motif (Cys-Xaa2-Cys-Xaa13-Cys-Xaa2-Cys) in which the cysteine residues serve as postulated ligands. Atomic absorption spectrophotometry applied to bacterially expressed E1A proteins revealed that the 289-amino acid protein binds one zinc ion, whereas the 243-amino acid protein binds no zinc. Replacing individual cysteine residues of the finger with other amino acids destroyed the trans-activating ability of the 289-amino acid protein, even when structurally or functionally conserved amino acids were substituted. These results strongly suggest that the zinc finger of the 46-amino acid domain is intimately linked to the ability of the large E1A protein to stimulate transcription of E1A-inducible promoters. Furthermore, zinc binding to one of the mutant finger proteins suggests either that only a precise finger structure formed by the tetrahedral coordination of zinc to the four consensus ligands is required for trans-activation or, possibly, that one of several neighboring histidine residues in various combinations with three of the consensus cysteine residues normally coordinates zinc. How the zinc finger in E1A might interact with DNA or protein to bring about trans-activation is discussed.


Subject(s)
Adenoviruses, Human/genetics , Oncogene Proteins, Viral/metabolism , Zinc/metabolism , Adenovirus Early Proteins , Amino Acid Sequence , Antigens, Viral, Tumor/genetics , Genetic Vectors , HeLa Cells/metabolism , Humans , Molecular Sequence Data , Mutation , Oncogene Proteins, Viral/genetics , Oncogene Proteins, Viral/isolation & purification , Plasmids , Protein Binding , Transfection
16.
Am Fam Physician ; 36(3): 121-3, 1987 Sep.
Article in English | MEDLINE | ID: mdl-3630877

ABSTRACT

Seed ticks, the first-stage larvae of hard ticks, are not always recognized. They are tiny (0.6 mm) and have six legs, rather than the eight legs found on nymphal and adult ticks. Seed ticks may transmit Rocky Mountain spotted fever, tularemia, babesiosis and Lyme disease. Pediculocides are effective in removing the larvae.


Subject(s)
Tick Infestations/drug therapy , Female , Humans , Infant , Piperonyl Butoxide/administration & dosage , Pyrethrins/administration & dosage , Soaps , Tick Infestations/diagnosis , Tick Infestations/therapy , Ticks/isolation & purification
17.
J Histochem Cytochem ; 35(1): 75-82, 1987 Jan.
Article in English | MEDLINE | ID: mdl-3025290

ABSTRACT

Phosphodiesterase I (PDE I) is an exonuclease capable of hydrolyzing a variety of phosphate ester and pyrophosphate bonds. Cell fractionation and histochemical studies in animal tissues have localized PDE I in the plasma membrane of various epithelia. This suggests a role for the enzyme in active transport. Distribution of PDE I in human tissues has not previously been studied. We have produced a polyclonal antiserum to bovine intestinal PDE I and have demonstrated crossreactivity with the human intestinal enzyme. This polyclonal antiserum was used in PAP immunocytochemistry to localize immunoreactive PDE I in a variety of human tissues. Localization was prominent in the gastrointestinal tract, including the cytoplasm of gastric mucosa parietal cells, cytoplasm of surface epithelium and isolated crypt cells in small intestine, and the colonic epithelial cytoplasm and brush border. Parotid gland acinar cells and scattered ductal cells showed positive cytoplasmic staining. Acinar and scattered pancreatic islet cells contained immunoreactive PDE I, as did Kupffer cells of the liver sinusoids. Immunoreactive PDE I was found in all vascular endothelia. The epithelium of the urinary tract showed extensive immunoreactivity. This included the distal convoluted and collecting tubules of the kidney, and ureteral and bladder urothelium. In previous histochemical studies of animal tissues, no evidence of PDE I activity was noted in male or female reproductive tract. In this study, immunoreactive PDE I was localized to human Sertoli cells and to basal epithelium of the epididymis and prostate acini. Fallopian tube epithelium of female reproductive tract also demonstrated immunoreactive PDI I, as did several cell types in term placenta. Our immunocytochemical results with human tissues differ significantly from previous histochemical studies in animal tissues, principally in the genitourinary system. This may be due in part to the different detection systems employed as well as the higher sensitivity of the immunoperoxidase technique. This underscores the importance of adjunct techniques in tissue surveys. The widespread epithelial distribution of immunoreactive PDE I detected by this polyclonal antibody implies an integral role in cell function, probably in active transport.


Subject(s)
Phosphoric Diester Hydrolases/analysis , Histocytochemistry , Humans , Immunochemistry , Phosphodiesterase I , Reference Values
18.
Arch Biochem Biophys ; 246(1): 245-9, 1986 Apr.
Article in English | MEDLINE | ID: mdl-3008653

ABSTRACT

The covalent intermediate of snake venom phosphodiesterase has been isolated using thymidine 5'-[alpha-32P]triphosphate as substrate. Phosphoamino acid analysis of the labeled enzyme demonstrates that threonine is the active site residue forming the covalent intermediate. 5'-Nucleotide phosphodiesterase is the first enzyme reported to have an active site threonine forming a covalent intermediate.


Subject(s)
Phosphoric Diester Hydrolases/metabolism , Threonine/metabolism , Autoradiography , Binding Sites , Crotalid Venoms/analysis , Electrophoresis, Polyacrylamide Gel , Hydrolysis , Phosphorylation
19.
Biochemistry ; 24(24): 6825-9, 1985 Nov 19.
Article in English | MEDLINE | ID: mdl-2416345

ABSTRACT

Polyclonal antibodies to native alkaline phosphatase and to native 5'-nucleotide phosphodiesterase were found to strongly cross-react with both enzymes. The antibodies also cross-react with both denatured enzymes, with glycopeptides from 5'-nucleotide phosphodiesterase, and with the oligosaccharides remaining after Pronase E digestion of the phosphodiesterase. They do not cross-react with either enzyme after their oligosaccharides have been modified or removed by periodate or trifluoromethanesulfonic acid treatment. Antibodies to denatured 5'-nucleotide phosphodiesterase do not bind to the native phosphodiesterase or alkaline phosphatase but do cross-react with denatured alkaline phosphatase even after removal or modification of the carbohydrate moieties. These results suggest that antibodies to denatured 5'-nucleotide phosphodiesterase may recognize amino acid sequence homology between alkaline phosphatase and 5'-nucleotide phosphodiesterase. However, antibodies to native enzymes apparently recognize cross-reactive determinants of the native enzymes which are carbohydrate in nature. This is the first report of antimammalian alkaline phosphatase antibodies which recognize the carbohydrate moieties of the enzyme.


Subject(s)
Alkaline Phosphatase/immunology , Intestines/enzymology , Pyrophosphatases/immunology , Animals , Antibodies , Antigen-Antibody Complex , Carbohydrates/analysis , Cattle , Cross Reactions , Epitopes/analysis , Immunodiffusion , Kinetics
20.
Biochim Biophys Acta ; 831(3): 330-4, 1985 Oct 18.
Article in English | MEDLINE | ID: mdl-3902089

ABSTRACT

The active site of bovine intestinal alkaline phosphatase (orthophosphoric-monoester phosphohydrolase (alkaline optimum), EC 3.1.3.1) was labeled with [32P]Pi, a radioactive CNBr peptide was isolated and the amino acid sequence was determined. The sequence of the active-site peptide has limited homology (26%) with the active-site sequence of Escherichia coli alkaline phosphatase except for the ten residues immediately flanking the active-site serine (70%). A possible amino acid sequence deduced from the amino acid composition of an active-site tryptic peptide from human placental alkaline phosphatase is very similar to the bovine intestinal active-site sequence. The amino-terminal sequence of bovine intestinal alkaline phosphatase is homologous (69%) with the human placental enzyme but not with the E. coli phosphatase.


Subject(s)
Alkaline Phosphatase/metabolism , Intestines/enzymology , Amino Acid Sequence , Animals , Binding Sites , Cattle , Escherichia coli/enzymology , Humans , Peptide Fragments/analysis , Species Specificity
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