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1.
Antonie Van Leeuwenhoek ; 111(10): 1967-1968, 2018 10.
Article in English | MEDLINE | ID: mdl-30178162

ABSTRACT

In Table 1 of the original article, the unit mg/L was incorrectly published as ng/L in the aluminum, chloride, sulphate and OM columns.

2.
Environ Microbiol ; 13(8): 2105-21, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21355972

ABSTRACT

The Salar Grande in the Coastal Range of Northern Chile is a fossil evaporitic basin filled with almost pure halite (95% NaCl average). It is assumed that the basin has not received input of brines since the Pliocene (5.3 to 1.8 million years). Below 1 m the halite has remained undissolved since this time, whereas the upper layer has been dissolved and recrystallized by dripping fogs and occasional rainfall. We compared the archaeal community at different depths using both nested PCR and cultivation. The upper 10 cm of halite crust contained diverse haloarchaeal species, including several from new genera, but their provenance is unknown. For samples deeper in the core, a new and rigorous procedure for chemically sterilizing the surface of single halite crystals was developed. These halite crystals contained only species of the genus Halobacterium (Hbt.). Halobacterium salinarum-like sequences were detected by PCR, and evidence that they were from ancient DNA include: comparison with numerous negative controls; detection of 16S rRNA sequence differences in non-conserved regions, indicating genuine evolutionary mutations rather than PCR-cloning artefacts; independent isolation of Hbt. salinarum from ancient halite; and diverse mechanisms possessed by this species for minimizing radiation damage and thus enhancing its potential for long-term survival. Haloarchaea related to Hbt. noricense were obtained from enrichment cultures from ≈ 0.4 and 15.4 m depth. We investigated Hbt. noricense strain A1 and found that when trapped inside halite crystals its recovery was as rapid after 27 months of entombment as at day 0, faring much better than other extreme halophiles. A biogeographical investigation showed that Hbt. noricense-like organisms were: commonly found in surface-sterilized ancient halite, associated with salt mines, in halite crusts, and, despite a much more intense search, only rarely detected in surface environments. We conclude that some Halobacterium species are specialists at long-term survival in halite.


Subject(s)
Archaea/classification , Archaea/physiology , Biodiversity , Environmental Microbiology , Salts , Archaea/genetics , Bacteriological Techniques , Chile , Halobacterium/classification , Halobacterium/genetics , Halococcus/genetics , Halococcus/physiology , Molecular Sequence Data , Phylogeny , RNA, Ribosomal, 16S/genetics
3.
Sci Total Environ ; 286(1-3): 51-9, 2002 Mar 08.
Article in English | MEDLINE | ID: mdl-11886099

ABSTRACT

Copper levels of nearly 500 mg l(-1) were measured in aqueous extracts of soil and sediment samples from the lowlands of Antofagasta. Arsenic levels of up to 183 mg l(-1) were found in river sediments, and 27.5 mg l(-1) arsenic was found at the location of a dam where potable water is extracted. This indicates that the arsenic contamination of water supplies reported recently for the pre-Andes may be a widespread problem throughout the region. Copper contamination from smelting activities also provides cause for concern as elevated levels were found in aqueous extracts of soil up to 20 km away from a smelter. This study went beyond traditional chemical analysis by assessing the potential benefits of using microbial biosensors as an alternative to determination of chemical speciation, to provide an environmentally relevant interpretation of soil/sediment residue levels. This approach is simple to use and enables a rapid, low cost assessment of pollutant bioavailability. It may, therefore, be of use for further investigations in the region and beyond.


Subject(s)
Arsenic/pharmacokinetics , Copper/pharmacokinetics , Soil Pollutants/pharmacokinetics , Biological Assay/methods , Biological Availability , Environmental Monitoring , Escherichia coli/drug effects , Geologic Sediments/chemistry , Industry , Pseudomonas fluorescens/drug effects , Soil Microbiology , Toxicity Tests , Vibrio/drug effects
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