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1.
PLoS One ; 18(11): e0290087, 2023.
Article in English | MEDLINE | ID: mdl-37967105

ABSTRACT

Astrocytic tumors are known for their high progression capacity and high mortality rates; in this regard, proteins correlated to prognosis can aid medical conduct. Although several genetic changes related to progression from grade 2 to grade 4 astrocytoma are already known, mRNA copies do not necessarily correlate with protein abundance and therefore could shadow further comprehension about this tumor's biology. This motivates us to seek for complementary strategies to study tumor progression at the protein level. Here we compare the proteomic profile of biopsies from patients with grade 2 (diffuse, n = 6) versus grade 4 astrocytomas (glioblastomas, n = 10) using shotgun proteomics. Data analysis performed with PatternLab for proteomics identified 5,206 and 6,004 proteins in the 2- and 4-grade groups, respectively. Our results revealed seventy-four differentially abundant proteins (p < 0.01); we then shortlist those related to greater malignancy. We also describe molecular pathways distinctly activated in the two groups, such as differences in the organization of the extracellular matrix, decisive both in tumor invasiveness and in signaling for cell division, which, together with marked contrasts in energy metabolism, are determining factors in the speed of growth and dissemination of these neoplasms. The degradation pathways of GABA, enriched in the grade 2 group, is consistent with a favorable prognosis. Other functions such as platelet degranulation, apoptosis, and activation of the MAPK pathway were correlated to grade 4 tumors and, consequently, unfavorable prognoses. Our results provide an important survey of molecular pathways involved in glioma pathogenesis for these histopathological groups.


Subject(s)
Astrocytoma , Brain Neoplasms , Glioblastoma , Humans , Proteomics , Brain Neoplasms/pathology , Astrocytoma/pathology , Glioblastoma/pathology , Signal Transduction , Proteins
2.
J Proteomics ; 289: 105012, 2023 10 30.
Article in English | MEDLINE | ID: mdl-37748533

ABSTRACT

This work discloses a unique, comprehensive proteomic dataset of Acinetobacter baumannii strains, both resistant and non-resistant to polymyxin B, isolated in Brazil generated using Orbitrap Fusion Lumos. From nearly 4 million tandem mass spectra, the software DiagnoMass produced 240,685 quality-filtered mass spectral clusters, of which PatternLab for proteomics identified 44,553 peptides mapping to 3479 proteins. Crucially, DiagnoMass shortlisted 3550 and 1408 unique mass spectral clusters for the resistant and non-resistant strains, respectively, with only about a third with sequences (and PTMs) identified by PatternLab. Further open-search attempts via FragPipe yielded an additional ∼20% identifications, suggesting the remaining unidentified spectra likely arise from complex combinations of post-translational modifications and amino-acid substitutions. This highlights the untapped potential of the dataset for future discoveries, particularly given the importance of PTMs, which remain elusive to nucleotide sequencing approaches but are crucial for understanding biological mechanisms. Our innovative approach extends beyond the identifications that are typically subjected to the bias of a search engine; we discern which spectral clusters are differential and subject them to increased scrutiny, akin to spectral library matching by comparing captured spectra to themselves. Our analysis reveals adaptations in the resistant strain, including enhanced detoxification, altered protein synthesis, and metabolic adjustments. SIGNIFICANCE: We present comprehensive proteomic profiles of non-resistant and resistant Acinetobacter baumannii from Brazilian Hospitals strains, and highlight the presence of discriminative and yet unidentified mass spectral clusters. Our work emphasizes the importance of exploring this overlooked data, as it could hold the key to understanding the complex dynamics of antibiotic resistance. This approach not only informs antimicrobial stewardship efforts but also paves the way for the development of innovative diagnostic tools. Thus, our findings have profound implications for the field, as far as methods for providing a new perspective on diagnosing antibiotic resistance as well as classifying proteomes in general.


Subject(s)
Acinetobacter baumannii , Polymyxins , Polymyxins/metabolism , Anti-Bacterial Agents/pharmacology , Acinetobacter baumannii/metabolism , Proteomics/methods , Proteome/metabolism , Brazil , Drug Resistance, Multiple, Bacterial , Microbial Sensitivity Tests
3.
J Proteomics ; 277: 104853, 2023 04 15.
Article in English | MEDLINE | ID: mdl-36804625

ABSTRACT

MOTIVATION: There are several well-established paradigms for identifying and pinpointing discriminative peptides/proteins using shotgun proteomic data; examples are peptide-spectrum matching, de novo sequencing, open searches, and even hybrid approaches. Such an arsenal of complementary paradigms can provide deep data coverage, albeit some unidentified discriminative peptides remain. RESULTS: We present DiagnoMass, software tool that groups similar spectra into spectral clusters and then shortlists those clusters that are discriminative for biological conditions. DiagnoMass then communicates with proteomic tools to attempt the identification of such clusters. We demonstrate the effectiveness of DiagnoMass by analyzing proteomic data from Escherichia coli, Salmonella, and Shigella, listing many high-quality discriminative spectral clusters that had thus far remained unidentified by widely adopted proteomic tools. DiagnoMass can also classify proteomic profiles. We anticipate the use of DiagnoMass as a vital tool for pinpointing biomarkers. AVAILABILITY: DiagnoMass and related documentation, including a usage protocol, are available at http://www.diagnomass.com.


Subject(s)
Proteomics , Software , Proteomics/methods , Proteins/chemistry , Peptides/chemistry , Escherichia coli , Algorithms , Databases, Protein
4.
An Acad Bras Cienc ; 94(1): e20190642, 2022.
Article in English | MEDLINE | ID: mdl-35384968

ABSTRACT

Scientific collections are important sources of information on biodiversity that can be useful for faunistic, taxonomic and phylogenetic studies. The aim of this study was to investigate the fauna of Passalidae deposited in the zoological collections in the States of the Brazilian Amazon. 14,652 Passalidae specimens are deposited in scientific collections, distributed in two subfamilies, 7 genera and 82 species. The species that had the highest number of deposited individuals were: Passalus interstitialis, Passalus interruptus, Veturius transversus and Paxillus leachi. Passalinae was the richest subfamily (n = 57) species, followed by Proculinae (n = 25). Passalus was the richest genus (n = 39) followed by Veturius (n = 21). The State of Amazonas was the richest (s = 67) followed by Pará (s = 45). The Instituto Nacional de Pesquisas da Amazônia was the institution with the highest number of deposited specimens. The species accumulation curve did not reach asymptote and Chao2 estimated 142 species more than the observed richness (s = 82 species). The richness of the bess beetle fauna from the Brazilian Amazon may be greater than recorded. The scientific collections provided quantitative and important data that allowed to determine a large fraction of the Amazon bess beetle fauna.


Subject(s)
Coleoptera , Animals , Biodiversity , Brazil , Phylogeny , Records
5.
An Acad Bras Cienc ; 94(1): e20201184, 2022.
Article in English | MEDLINE | ID: mdl-35239771

ABSTRACT

The inadequate choice of a diagnostic method or the option for techniques that have low sensitivity and specificity may limit the diagnosis of parasitic agents that affect aquatic mammals. The aim of this study was to evaluate the performance of the FLOTAC technique and compare it with three traditional methods (Willis, sedimentation and centrifugation- flotation) used in the diagnosis of gastrointestinal parasites in aquatic mammals. For this, 129 fecal samples from 12 species were collected. Each sample was submitted to laboratory processing using the Willis, Hoffman techniques, Faust method and FLOTAC. Sensitivity, specificity, real prevalence, estimated prevalence, positive predictive value, negative predictive value, correct classification (accuracy) and incorrect classification were evaluated to compare the different diagnostic methods. The highest frequency of positive samples occurred using FLOTAC (46.51%), compared to Hoffman (23.25%), Faust (10.07%) and Willis techniques (6.97%). In the samples analyzed, the occurrence of Strongylidae eggs and Eimeriidae oocysts was frequently observed. The FLOTAC technique proved to be the most appropriate technique and due to its efficacy, is strongly recommended for coproparasitological evaluations in aquatic mammals.


Subject(s)
Intestinal Diseases, Parasitic , Parasites , Animals , Feces/parasitology , Intestinal Diseases, Parasitic/parasitology , Mammals/parasitology , Parasite Egg Count/methods , Sensitivity and Specificity
6.
Cancer Radiother ; 26(3): 433-439, 2022 May.
Article in English | MEDLINE | ID: mdl-34366239

ABSTRACT

PURPOSE: We report our experience of 86 consecutive patients with locally advanced nasopharyngeal carcinoma who were treated with volumetric modulated arc therapy. MATERIALS AND METHODS: We retrospectively reviewed the medical records of 86 patients with histologically proven primary nasopharyngeal carcinoma treated with volumetric modulated arctherapy technique radiotherapy. Primary endpoints were local, regional, distant control, and overall survival, second endpoint was late toxicity. RESULTS: The median age was 47.5 years (range: 13-79 years) with sex ratio 1.09. At diagnosis, rhinologic symptoms represented the most common clinical presentation, reported by 61 patients (70.9%). Almost 88.4% of patients presented non-keratinizing undifferentiated carcinoma histology (n=76). Most of the patients presented a locally advanced disease defined by stage III and IVa (95.3%). Therefore, 31 patients were treated by concurrent chemoradiation (36%), 52 patients received induction chemotherapy followed by concurrent chemoradiotherapy (57%), three patients received induction chemotherapy followed by exclusive radiotherapy (3.5%). and three patients treated with exclusive irradiation (3.5%). With a median follow up of 15.7 months (range: 4-33.3 months), nine patients died (10.4%), three presented local or locoregional relapse (3.4%), while nine patients presented distant recurrences (10.4%). The two years overall and disease-free survival rates were 88.7% and 83.1% respectively, locoregional control was 100% at 12 months and 96.2% at 24 months, and the two years distant failure-free survival was 86.7%. Time to relapse was the only prognostic factor in univariate analysis for overall survival in our study. The therapeutic tolerance was good with 61.7% of grade 3 and 2.3% grade 4 hyposialia respectively, 46.5% of otological disorders and no radionecrosis was noted. CONCLUSION: Volumetric modulated arctherapy technique with concurrent chemoradiotherapy is an effective treatment for nasopharyngeal carcinoma with excellent overall and locoregional control without severe toxicity. Distant metastasis is the major site of failure, so induction chemotherapy added to chemoradiotherapy must be discussed in multidisciplinary consultation meeting because it significantly improved recurrence-free survival and overall survival, as compared with chemoradiotherapy alone.


Subject(s)
Nasopharyngeal Neoplasms , Radiotherapy, Intensity-Modulated , Antineoplastic Combined Chemotherapy Protocols/therapeutic use , Chemoradiotherapy/methods , Cisplatin , Humans , Middle Aged , Nasopharyngeal Carcinoma/therapy , Nasopharyngeal Neoplasms/drug therapy , Nasopharyngeal Neoplasms/radiotherapy , Neoplasm Recurrence, Local/pathology , Neoplasm Staging , Radiotherapy, Intensity-Modulated/adverse effects , Radiotherapy, Intensity-Modulated/methods , Retrospective Studies , Treatment Outcome
7.
Stem Cells Int ; 2021: 3168428, 2021.
Article in English | MEDLINE | ID: mdl-34956370

ABSTRACT

BACKGROUND: Obesity is characterized as a disease that directly affects the whole-body metabolism and is associated with excess fat mass and several related comorbidities. Dynamics of adipocyte hypertrophy and hyperplasia play an important role in health and disease, especially in obesity. Human adipose-derived stem cells (hASC) represent an important source for understanding the entire adipogenic differentiation process. However, little is known about the triggering step of adipogenesis in hASC. Here, we performed a proteogenomic approach for understanding the protein abundance alterations during the initiation of the adipogenic differentiation process. METHODS: hASC were isolated from adipose tissue of three donors and were then characterized and expanded. Cells were cultured for 24 hours in adipogenic differentiation medium followed by protein extraction. We used shotgun proteomics to compare the proteomic profile of 24 h-adipogenic, differentiated, and undifferentiated hASC. We also used our previous next-generation sequencing data (RNA-seq) of the total and polysomal mRNA fractions of hASC to study posttranscriptional regulation during the initial steps of adipogenesis. RESULTS: We identified 3420 proteins out of 48,336 peptides, of which 92 proteins were exclusively identified in undifferentiated hASC and 53 proteins were exclusively found in 24 h-differentiated cells. Using a stringent criterion, we identified 33 differentially abundant proteins when comparing 24 h-differentiated and undifferentiated hASC (14 upregulated and 19 downregulated, respectively). Among the upregulated proteins, we shortlisted several adipogenesis-related proteins. A combined analysis of the proteome and the transcriptome allowed the identification of positive correlation coefficients between proteins and mRNAs. CONCLUSIONS: These results demonstrate a specific proteome profile related to adipogenesis at the beginning (24 hours) of the differentiation process in hASC, which advances the understanding of human adipogenesis and obesity. Adipogenic differentiation is finely regulated at the transcriptional, posttranscriptional, and posttranslational levels.

8.
Langmuir ; 37(44): 12961-12971, 2021 11 09.
Article in English | MEDLINE | ID: mdl-34714089

ABSTRACT

In this paper, two biosystems based on filamentous fungi and Pd nanoparticles (NPs) were synthesized and structurally characterized. In the first case, results concerning the integration and distribution of Pd-NPs on Phialomyces macrosporus revealed that nanoparticles are accumulated on the cell wall, keeping the cytoplasm isolated from abiotic particles. However, the Penicillium sp. species showed an unexpected internalization of Pd-NPs in the fungal cytosol, becoming a promising biosystem to further studies of in vivo catalytic reactions. Next, we report a new solution-based strategy to prepare palladized biohybrids through sequential reduction of Pd2+ ions over previously harvested fungus/Au-NP composites. The chemical composition and the morphology of the biohybrid surface were characterized using a combination of scanning electron microscopy, transmission electron microscopy, and photoelectron spectroscopy. The deposition of Pd0 over the fungal surface produced biohybrids with a combination of Au and Pd in the NPs. Interestingly, other chemical species such as Au+ and Pd2+ are also observed on the outermost wall of microorganisms. Finally, the application of A. niger/AuPd-NP biohybrids in the 3-methyl-2-buten-1-ol hydrogenation reaction is presented for the first time. Biohybrids with a high fraction of Pd0 are active for this catalytic reaction.


Subject(s)
Fungi , Palladium , Catalysis , Microscopy, Electron, Transmission , Photoelectron Spectroscopy
9.
J Infect Dis ; 224(12 Suppl 2): S228-S236, 2021 09 01.
Article in English | MEDLINE | ID: mdl-34469563

ABSTRACT

BACKGROUND: In 2013, the Dominican Republic introduced 13-valent pneumococcal conjugate vaccine (PCV13) using a 3-dose schedule (at 2, 4 and 12 months of age). We evaluated the impact of PCV13 on serotypes causing pneumococcal pneumonia with pleural effusion. METHODS: Surveillance data after PCV13 introduction (July 2014 to June 2016) were compared with data before PCV13 introduction (July 2009 to June 2011). Cases were defined as radiologic evidence of pneumonia with pleural effusion in a child aged <15 years. Pneumococcus was detected in pleural fluid by either culture or polymerase chain reaction, and serotyping was performed. The Ministry of Health's PCV13 uptake data for 2014-2016 were obtained. RESULTS: The prevalence of pneumococcus among cases was similar before and after PCV13 introduction (56.4% and 52.8%, respectively). The proportion of pneumococcal cases caused by vaccine serotypes was 86% for children <2 years old both before and PCV13 introduction. Compared with before PCV13, serotype 14 accounted for a smaller (28% vs 13%, respectively; P = .02) and serotype 1 for a larger (23% vs 37%; P = .09) proportion of pneumococcal cases after PCV13 introduction. National uptake for the first, second, and third PCV13 doses was 94%, 81%, and 28%, respectively, in 2014 and 75%, 61%, and 26% in 2015. DISCUSSION: While the decrease in pneumococcal pneumonia with pleural effusion caused by serotype 14 may reflect an early effect of PCV13 implementation, other vaccine serotypes, including serotype 1, are not well controlled. Better PCV13 coverage for all 3 doses is needed.


Subject(s)
Pneumococcal Infections/epidemiology , Pneumococcal Vaccines/administration & dosage , Pneumococcal Vaccines/adverse effects , Pneumonia, Pneumococcal/epidemiology , Vaccines, Conjugate/adverse effects , Child , Child, Preschool , Dominican Republic/epidemiology , Female , Humans , Infant , Male , Pleural Effusion/epidemiology , Pleural Effusion/etiology , Pneumococcal Infections/complications , Pneumococcal Infections/prevention & control , Pneumococcal Vaccines/immunology , Pneumonia, Pneumococcal/complications , Pneumonia, Pneumococcal/prevention & control , Postoperative Complications , Prevalence , Serogroup , Streptococcus pneumoniae/immunology , Streptococcus pneumoniae/isolation & purification , Vaccination , Vaccines, Conjugate/administration & dosage , Vaccines, Conjugate/immunology
10.
J Intern Med ; 290(1): 101-115, 2021 07.
Article in English | MEDLINE | ID: mdl-33259665

ABSTRACT

BACKGROUND: Infections are one of the most common causes of morbidity and mortality in patients with systemic lupus erythematosus (SLE). SLE patients have a higher risk of tuberculosis (TB) infection due to impaired immune defence. OBJECTIVES: To investigate the demographics, clinical characteristics and outcomes of patients with SLE and concomitant TB. METHODS: Medical records of SLE patients with TB who were admitted to Peking Union Medical College (PUMC) Hospital in 1983-2019 were retrospectively reviewed. Age- and sex-matched SLE inpatients without TB were randomly selected as controls. Clinical and laboratory features and treatment were analysed and compared, and subjects were followed up to assess their outcome. RESULTS: Of the 10 469 SLE inpatients, 249 (2.4%) were diagnosed with TB. Compared with controls, SLE/TB + patients exhibited higher frequency of prior haematologic, mucocutaneous and musculoskeletal system involvement, and prior treatment with potent glucocorticoid/immunosuppressive agents (GC/ISA). Arthritis and alopecia, positive T-SPOT.TB test and lymphocytopenia were more common in SLE/TB + patients. SLE/TB + patients with lupus before TB (SLE â†’ TB) had higher risk of miliary TB (22.8%) and intracranial TB (16.5%) than SLE/TB + patients with lupus after TB (TB â†’ SLE). SLE/TB + patients exhibited shorter long-term survival than SLE/TB- patients; those with poorer in-hospital outcomes had more severe lymphocytopenia and had received less treatment with ISAs. CONCLUSION: Systemic lupus erythematosus patients treated vigorously with GC/ISA should be alerted of increased risk of TB infection, especially miliary and intracranial TB. Positive T-SPOT.TB and lymphocytopenia served as discriminatory variables between SLE/TB + and SLE/TB- patients. Lymphocytopenia was associated with poorer outcomes in SLE/TB + patients.


Subject(s)
Immunocompromised Host , Lupus Erythematosus, Systemic/complications , Lupus Erythematosus, Systemic/immunology , Tuberculosis/complications , Case-Control Studies , Glucocorticoids/adverse effects , Humans , Immunosuppressive Agents/adverse effects , Longitudinal Studies , Lupus Erythematosus, Systemic/drug therapy , Lymphopenia/etiology , Prognosis , Retrospective Studies , Risk Factors
11.
Biochim Biophys Acta Proteins Proteom ; 1869(3): 140581, 2021 03.
Article in English | MEDLINE | ID: mdl-33301959

ABSTRACT

Human peripheral blood mononuclear cells (PBMC) are key to several diagnostics assays and basic science research. Blood pre-analytical variations that occur before obtaining the PBMC fraction can significantly impact the assays results, including viability, composition, integrity, and gene expression changes of immune cells. With this as motivation, we performed a quantitative shotgun proteomics analysis using Isobaric Tag for Relative and Absolute Quantitation (iTRAQ 8plex) labeling to compare PBMC obtained from 24 h-stored blood at room temperature versus freshly isolated. We identified a total of 3195 proteins, of which 245 were differentially abundant (101 upregulated and 144 downregulated). Our results revealed enriched pathways of downregulated proteins related to exocytosis, localization, vesicle-mediated transport, cell activation, and secretion. In contrast, pathways related to exocytosis, neutrophil degranulation and activation, granulocyte activation, leukocyte degranulation, and myeloid leukocyte activation involved in immune response were enriched in upregulated proteins, which may indicate probable granulocyte contamination and activation due to blood storage time and temperature. Examples of upregulated proteins in the 24 h-PBMC samples are CAMP, S100A8, LTA4H, RASAL3, and S100A6, which are involved in an adaptive immune system and antimicrobial activity, proinflammatory mediation, aminopeptidase activities, and naïve T cells survival. Moreover, examples of downregulated proteins are NDUFA5, TAGLN2, H3C1, TUBA8, and CCT2 that are related to the cytoskeleton, cell junction, mitochondrial respiratory chain. In conclusion, the delay in blood-processing time directly impacts the proteomic profile of human PBMC, possibly through granulocyte contamination and activation.


Subject(s)
Blood Proteins/metabolism , Leukocytes, Mononuclear/metabolism , Proteome , Proteomics/methods , Adult , Chromatography, Liquid/methods , Gene Ontology , Humans , Male , Mass Spectrometry/methods , Protein Interaction Maps , Young Adult
12.
Trop Anim Health Prod ; 53(1): 37, 2020 Nov 23.
Article in English | MEDLINE | ID: mdl-33230578

ABSTRACT

The aim of this study was to determine the frequency of Taenia solium anti-metacestode antibodies in slaughtered pigs in a semi-arid region of the "Alto Sertão" of Sergipe state, Brazil, and verify the risk factors associated with swine cysticercosis. For this, 230 samples of swine blood from two slaughterhouses were collected and analyzed by indirect ELISA. The pigs came from five non-technical properties in the semi-arid region of the Alto Sertão of Sergipe state. Searches for cysts in the skeletal muscles of the pigs were performed during slaughter. In addition, an epidemiological questionnaire was applied to the pigs' original properties to determine risk factors. Besides that, the official health services database was evaluated for confirmed cases of neurocysticercosis and taeniasis in humans in the last 5 years, living in the studied region. Seropositivity in pigs was 12.6%, with no significant difference between males and females. No cysts were found in the carcasses of the slaughtered pigs. A positive association was found for properties that discharge domestic sewage into the environment, in river or streams, increasing the risk of positivity by 5.72 times. When analyzing the database of official agencies, there were no records of cases of neurocysticercosis or taeniasis in the resident population in the last 5 years. However, there were frequent cases of idiopathic epilepsy. The results demonstrate that study area is endemic for swine cysticercosis and serves as a warning of the possibility of the occurrence of the taeniasis-cysticercosis complex.


Subject(s)
Cysticercosis/veterinary , Swine Diseases/parasitology , Animal Husbandry , Animals , Brazil/epidemiology , Cysticercosis/epidemiology , Cysticercosis/parasitology , Enzyme-Linked Immunosorbent Assay/veterinary , Female , Humans , Prevalence , Risk Factors , Swine , Swine Diseases/epidemiology , Taenia solium/isolation & purification , Zoonoses
13.
Sci Rep ; 10(1): 10335, 2020 06 25.
Article in English | MEDLINE | ID: mdl-32587372

ABSTRACT

Meningiomas are among the most common primary tumors of the central nervous system (CNS) and originate from the arachnoid or meningothelial cells of the meninges. Surgery is the first option of treatment, but depending on the location and invasion patterns, complete removal of the tumor is not always feasible. Reports indicate many differences in meningiomas from male versus female patients; for example, incidence is higher in females, whereas males usually develop the malignant and more aggressive type. With this as motivation, we used shotgun proteomics to compare the proteomic profile of grade I meningioma biopsies of male and female patients. Our results listed several differentially abundant proteins between the two groups; some examples are S100-A4 and proteins involved in RNA splicing events. For males, we identified enriched pathways for cell-matrix organization and for females, pathways related to RNA transporting and processing. We believe our findings contribute to the understanding of the molecular differences between grade I meningiomas of female and male patients.


Subject(s)
Biomarkers, Tumor/analysis , Meningeal Neoplasms/diagnosis , Meninges/pathology , Meningioma/diagnosis , Aged , Aged, 80 and over , Biomarkers, Tumor/metabolism , Biopsy , Datasets as Topic , Female , Humans , Male , Meningeal Neoplasms/pathology , Meningioma/pathology , Middle Aged , Neoplasm Grading , Proteomics , Sex Factors , Signal Transduction
14.
Mol Genet Genomic Med ; 7(12): e962, 2019 12.
Article in English | MEDLINE | ID: mdl-31595705

ABSTRACT

BACKGROUND: Maturity-onset diabetes of the young (MODY) is a form of monogenic diabetes with autosomal dominant inheritance. To date, mutations in 11 genes have been frequently associated with this phenotype. In Brazil, few cohorts have been screened for MODY, all using a candidate gene approach, with a high prevalence of undiagnosed cases (MODY-X). METHODS: We conducted a next-generation sequencing target panel (tNGS) study to investigate, for the first time, a Brazilian cohort of MODY patients with a negative prior genetic analysis. One hundred and two patients were selected, of which 26 had an initial clinical suspicion of MODY-GCK and 76 were non-GCK MODY. RESULTS: After excluding all benign and likely benign variants and variants of uncertain significance, we were able to assign a genetic cause for 12.7% (13/102) of the probands. Three rare MODY subtypes were identified (PDX1/NEUROD1/ABCC8), and eight variants had not been previously described/mapped in genomic databases. Important clinical findings were evidenced in some cases after genetic diagnosis, such as MODY-PDX1/HNF1B. CONCLUSION: A multiloci genetic approach allowed the identification of rare MODY subtypes, reducing the large percentage of MODY-X in Brazilian cases and contributing to a better clinical, therapeutic, and prognostic characterization of these rare phenotypes.


Subject(s)
Diabetes Mellitus, Type 2/genetics , Genetic Testing/methods , High-Throughput Nucleotide Sequencing/methods , Adolescent , Adult , Basic Helix-Loop-Helix Transcription Factors/genetics , Brazil , Cohort Studies , Female , Genetic Predisposition to Disease , Homeodomain Proteins/genetics , Humans , Male , Sequence Analysis, DNA , Sulfonylurea Receptors/genetics , Trans-Activators/genetics , Young Adult
15.
Rev. bras. farmacogn ; 29(3): 373-380, May-June 2019. tab, graf
Article in English | LILACS-Express | LILACS | ID: biblio-1020578

ABSTRACT

ABSTRACT The excessive sun exposure, coupled with lack of sun protection represents one of the biggest risks to the occurrence of skin cancer and photoaging. Recent strategies for photoprotection have included the incorporation of natural antioxidant and anti-inflammatory compounds, into sunscreens, and the oral administration of natural antioxidant extracts. In this work, we use Brazilian red propolis extract because its antioxidant and anti-inflammatory activities. The aim of this work was to evaluate the sun protection factor and antioxidant activity of different hydroalcoholic extracts of red propolis (70% and 75%) prepared from lyophilized red propolis at room and high temperatures. The sun protection factor in vitro was determined by a spectrophotometric method developed by Mansur. The hydroalcoholic extracts of red propolis incorporated with Filter UVA-UVB 5% Gel Permulem TR-1 presented absorption in the UVB region. Also, the in vitro capacity of the hydroalcoholic extracts of red propolis to increase photoprotective activity of Filter UVA-UVB 5% Gel was evaluated. The hydroalcoholic extracts of red propolis incorporated presented higher values of sun protection factor and showed synergism in the photoprotective activity of Filter UVA-UVB 5% Gel Permulem TR-1. The antioxidant activity and sun protection factor are correlated with total phenolics content of the extracts and the hydroalcoholic extract of red propolis 75% at room temperature was choosen. The formulation developed with Filter UVA-UVB 5% Gel Permulem TR-1 with this hydroalcoholic extract of red propolis showed safe to be applied on the skin according HET-CAM test. Suggests indication of hydroalcoholic extract of red propolis (75% - room temperature) associated to photoprotective formulations for use in photoprotective products.

16.
Med Sante Trop ; 29(1): 97-101, 2019 Feb 01.
Article in English | MEDLINE | ID: mdl-31031260

ABSTRACT

Cancer is a major cause of morbidity and mortality in children under the age of 15 years worldwide. To contribute to better knowledge of childhood cancers in Africa. To determine the causes of pediatric cancers and compare them with the results of a previous study and with data available for sub-Saharan Africa. This observational, descriptive study of the data recorded from 2007 to 2015 in the pediatric oncology unit of the University Hospital Center of Treichville in Abidjan analyzes the general and the age- and sex-specific proportions of children under the age of 15 years with neoplasia according to the International Classification of Childhood Cancer, 3rd edition (ICCC.3). This study includes 863 new cases. The sex ratio (M/F) was 1.4, and the mean age 7 years (range: 3 months to 14 years 9 months). The neoplasia rate peaked in the group aged 5-9 years (38.6 %). The most common cancers were: lymphomas (44 %), retinoblastoma (11.7 %), renal tumors (10.1 %), leukemias (6.3 %), and soft tissue sarcomas (5, 9 %). Burkitt lymphoma (85.3 %) and nephroblastoma (90.8 %) were the dominant histological type of lymphoma and renal tumors. This study shows an increase in the annual number of new cases, and an epidemiology close to that reported in other centers in sub-Saharan Africa.


Subject(s)
Neoplasms/epidemiology , Adolescent , Age Distribution , Child , Child, Preschool , Cote d'Ivoire/epidemiology , Female , Hospitals, University , Humans , Infant , Male , Oncology Service, Hospital , Pediatrics , Sex Distribution
17.
PLoS One ; 14(2): e0212750, 2019.
Article in English | MEDLINE | ID: mdl-30794652

ABSTRACT

The HLA-G and MICA genes are stimulated under inflammatory conditions and code for soluble (sMICA and sHLA-G) or membrane-bound molecules that exhibit immunomodulatory properties. It is still unclear whether they would have a synergistic or antagonistic effect on the immunomodulation of the inflammatory response, such as in chronic kidney disease (CKD), contributing to a better prognosis after the kidney transplantation. In this study, we went from genetic to plasma analysis, first evaluating the polymorphism of MICA, NKG2D and HLA-G in a cohort from Southern Brazil, subdivided in a control group of individuals (n = 75), patients with CKD (n = 94), and kidney-transplant (KT) patients (n = 64). MICA, NKG2D and HLA-G genotyping was performed by polymerase chain reaction with specific oligonucleotide probes, Taqman and Sanger sequencing, respectively. Levels of soluble forms of MICA and HLA-G were measured in plasma with ELISA. Case-control analysis showed that the individuals with haplotype HLA-G*01:01/UTR-4 have a lower susceptibility to develop chronic kidney disease (OR = 0.480; p = 0.032). Concerning the group of kidney-transplant patients, the HLA-G genotypes +3010 GC (rs1710) and +3142 GC (rs1063320) were associated with higher risk for allograft rejection (OR = 5.357; p = 0.013 and OR = 5.357, p = 0.013, respectively). Nevertheless, the genotype +3010 GG (OR = 0.136; p = 0.041) was associated with kidney allograft acceptance, suggesting that it is a protection factor for rejection. In addition, the phenotypic analysis revealed higher levels of sHLA-G (p = 0.003) and sMICA (p < 0.001) in plasma were associated with the development of CKD. For patients who were already under chronic pathological stress and underwent a kidney transplant, a high sMICA (p = 0.001) in pre-transplant proved to favor immunomodulation and allograft acceptance. Even so, the association of genetic factors with differential levels of soluble molecules were not evidenced, we displayed a synergistic effect of sMICA and sHLA-G in response to inflammation. This increase was observed in CKD patients, that when undergo transplantation, had this previous amount of immunoregulatory molecules as a positive factor for the allograft acceptance.


Subject(s)
Graft Rejection/genetics , HLA-G Antigens/genetics , Histocompatibility Antigens Class I/genetics , Kidney Transplantation , Polymorphism, Genetic , Renal Insufficiency, Chronic/genetics , Adult , Allografts , Case-Control Studies , Female , Graft Rejection/immunology , Graft Rejection/pathology , HLA-G Antigens/immunology , Histocompatibility Antigens Class I/immunology , Humans , Male , Middle Aged , NK Cell Lectin-Like Receptor Subfamily K/genetics , NK Cell Lectin-Like Receptor Subfamily K/immunology , Renal Insufficiency, Chronic/immunology , Renal Insufficiency, Chronic/pathology , Renal Insufficiency, Chronic/surgery , Risk Factors
18.
Scand J Immunol ; 87(4): e12650, 2018 Apr.
Article in English | MEDLINE | ID: mdl-29473686

ABSTRACT

Immune homeostasis has been suggested to play an important role in the clinical evolution of chronic Chagas disease; however, the immunopathologic factors involved have not been fully elucidated. Therefore, our study aimed to analyse the frequency of CD4+ CD25+ FoxP3+ cells, classic Th17 cells, alternative Th17 cells and IL-17+ B cells from peripheral blood of chronic cardiac patients after in vitro stimulation with Trypanosoma cruzi soluble EPI antigen. Patients were selected and classified according to clinical evaluation of cardiac involvement: mild, B1 (CARD1) (n = 20) and severe, C (CARD2) (n = 11). Patients with the indeterminate form of CD were included as the control group A (IND) (n = 17). Blood samples were collected and cultured in the presence of EPI antigen. Cells frequency and median fluorescence intensity (MFI) were obtained by flow cytometry. Our results showed that only CD4+ CD25+ FoxP3+ , CD4+ CD25high FoxP3+ , CD4+ IL-17+ IFN-γ- and CD4+ IL-17+ IFN-γ+ cells are more frequent in patients with severe cardiac disease and correlate with worse global cardiac function. However, while indeterminate patients demonstrated a positive correlation between CD4+ CD25+ FoxP3+ and CD4+ IL-17+ IFN-γ- Th17 cells, this relationship was not observed in cardiac patients. IL-17 expression by Th17 cells and B cells correlated with disease progression. Altogether our results suggest that the clinical progression of Chagas cardiomyopathy involves worsening of inflammation and impairment of immunoregulatory mechanisms.


Subject(s)
B-Lymphocyte Subsets/immunology , Chagas Cardiomyopathy/pathology , Forkhead Transcription Factors/metabolism , Heart/physiopathology , Interleukin-17/metabolism , Interleukin-2 Receptor alpha Subunit/metabolism , Th17 Cells/immunology , B-Lymphocyte Subsets/classification , Cells, Cultured , Female , Humans , Inflammation/pathology , Interferon-gamma/immunology , Male , Th17 Cells/classification , Trypanosoma cruzi/immunology , Ventricular Function, Left/physiology
19.
Int J Exp Pathol ; 98(4): 191-202, 2017 08.
Article in English | MEDLINE | ID: mdl-28895246

ABSTRACT

Toxoplasmosis represents one of the most common zoonoses worldwide. Its agent, Toxoplasma gondii, causes a severe innate pro-inflammatory response. The indigenous intestinal microbiota promotes host animal homoeostasis and may protect the host against pathogens. Germ-free (GF) animals provide an important tool for the study of interactions between host and microbiota. In this study, we assessed the role of indigenous microorganisms in disease development utilizing a murine toxoplasmosis model, which includes conventional (CV) and GF NIH Swiss mice. CV and GF mice orally inoculated with T. gondii had similar survival curves. However, disease developed differently in the two animal groups. In CV mice, intestinal permeability increased and levels of intestinal pro-inflammatory cytokines were altered. In GF animals, there were discrete epithelial degenerative changes and mucosal oedema, but the liver and lungs displayed significant lesions. We conclude that, despite similar survival curves, CV animals succumb to an exaggerated inflammatory response, whereas GF mice fail to produce an adequate systemic response.


Subject(s)
Intestines/microbiology , Microbiota , Toxoplasma , Toxoplasmosis/microbiology , Animals , Cytokines/metabolism , Female , Inflammation/microbiology , Lung/microbiology , Male , Mice
20.
Implant Dent ; 26(4): 567-573, 2017 Aug.
Article in English | MEDLINE | ID: mdl-28383305

ABSTRACT

OBJECTIVE: To evaluate the influence of different veneering materials (porcelain and resin) and implants (short and conventional) in the strain distribution of implant-supported splinted fixed partial dentures (FPDs) using digital image correlation (DIC). MATERIAL AND METHODS: Four polyurethane models were fabricated with resin replicas (first premolar) and short and/or conventional implants replacing the second premolar and first and second molars, according to the following configurations: G1, 2 conventional (second premolar and first molar) and 1 short (second molar) implant; G2, 1 conventional (second premolar) and 2 short (first and second molar) implants; G3, 3 short implants; G4, 3 conventional implants. Porcelain- and resin-veneered splinted FPDs were screwed to the implant abutments. The DIC system was used to calculate strains during application of occlusal load (250 N). RESULTS: Porcelain- and resin-veneered showed similar strain distribution for all groups (P > 0.05). Concentration of compressive strains was higher in G3P and G3R with maximum compressive strains of -1271.50 and -1026.88 µs, respectively. G4 transferred the best strain distribution (porcelain, -275.14 µs; resin, -254.44 µs), followed by G2 (porcelain, -306.79 µs; resin, -310.63 µs). CONCLUSION: The veneering material used did not influence the strain distribution. In addition, conventional implants generate less strain concentration, although the combination of 2 short and 1 conventional implant seems to be a viable plan.


Subject(s)
Acrylic Resins/chemistry , Dental Implants , Dental Porcelain/chemistry , Dental Prosthesis, Implant-Supported , Dental Veneers , Denture, Partial, Fixed , Image Processing, Computer-Assisted , Dental Stress Analysis , Denture Design , In Vitro Techniques , Materials Testing , Stress, Mechanical
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