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1.
PLoS One ; 17(7): e0270018, 2022.
Article in English | MEDLINE | ID: mdl-35834547

ABSTRACT

IMPORTANCE: Extracellular matrix proteins and enzymes involved in degradation have been found to be associated with tissue fibrosis and ureteropelvic junction obstruction (UPJO). In this study we developed a promising urinary biomarker model which can identify reduced renal function in UPJ obstruction patients. This can potentially serve as a non-invasive way to enhance surgical decision making for patients and urologists. OBJECTIVE: We sought to develop a predictive model to identify UPJO patients at risk for reduced renal function. DESIGN: Prospective cohort study. SETTING: Pre-operative urine samples were collected in a prospectively enrolled UPJO biomarker registry at our institution. Urinary MMP-2, MMP-7, TIMP-2, and NGAL were measured as well as clinical characteristics including hydronephrosis grade, differential renal function, t1/2, and UPJO etiology. PARTICIPANTS: Children who underwent pyeloplasty for UPJO. MAIN OUTCOME MEASUREMENT: Primary outcome was reduced renal function defined as MAG3 function <40%. Multivariable logistic regression was applied to identify the independent predictive biomarkers in the original Training cohort. Model validation and generalizability were evaluated in a new UPJO Testing cohort. RESULTS: We included 71 patients with UPJO in the original training cohort and 39 in the validation cohort. Median age was 3.3 years (70% male). By univariate analysis, reduced renal function was associated with higher MMP-2 (p = 0.064), MMP-7 (p = 0.047), NGAL (p = 0.001), and lower TIMP-2 (p = 0.033). Combining MMP-7 with TIMP-2, the multivariable logistic regression model predicted reduced renal function with good performance (AUC = 0.830; 95% CI: 0.722-0.938). The independent testing dataset validated the results with good predictive performance (AUC = 0.738). CONCLUSIONS AND RELEVANCE: Combination of urinary MMP-7 and TIMP-2 can identify reduced renal function in UPJO patients. With the high sensitivity cutoffs, patients can be categorized into high risk (aggressive management) versus lower risk (observation).


Subject(s)
Hydronephrosis , Matrix Metalloproteinase 7 , Tissue Inhibitor of Metalloproteinase-2 , Ureteral Obstruction , Biomarkers/urine , Child , Child, Preschool , Female , Humans , Hydronephrosis/etiology , Hydronephrosis/urine , Kidney/physiopathology , Kidney Pelvis/physiopathology , Lipocalin-2/urine , Male , Matrix Metalloproteinase 2/urine , Matrix Metalloproteinase 7/urine , Prospective Studies , Tissue Inhibitor of Metalloproteinase-2/urine , Ureteral Obstruction/complications , Ureteral Obstruction/surgery , Ureteral Obstruction/urine
2.
J Vasc Surg Cases Innov Tech ; 8(3): 390-395, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35754934

ABSTRACT

We have presented the successful endovascular management of an injury to the proximal left common carotid artery following attempted cannulation of the right internal jugular vein in a critically ill patient with multisystem organ failure secondary to infection with SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2).

3.
PLoS One ; 12(4): e0176421, 2017.
Article in English | MEDLINE | ID: mdl-28445507

ABSTRACT

M13 and other members of the Ff class of filamentous bacteriophages have been extensively employed in myriad applications. The Ph.D. series of phage-displayed peptide libraries were constructed from the M13-based vector M13KE. As a direct descendent of M13mp19, M13KE contains the lacZα insert in the intergenic region between genes IV and II, where it interrupts the replication enhancer of the (+) strand origin. Phage carrying this 816-nucleotide insert are viable, but propagate in E. coli at a reduced rate compared to wild-type M13 phage, presumably due to a replication defect caused by the insert. We have previously reported thirteen compensatory mutations in the 5'-untranslated region of gene II, which encodes the replication initiator protein gIIp. Here we report several additional mutations in M13KE that restore a wild-type propagation rate. Several clones from constrained-loop variable peptide libraries were found to have ejected the majority of lacZα gene in order to reconstruct the replication enhancer, albeit with a small scar. In addition, new point mutations in the gene II 5'-untranslated region or the gene IV coding sequence have been spontaneously observed or synthetically engineered. Through phage propagation assays, we demonstrate that all these genetic modifications compensate for the replication defect in M13KE and restore the wild-type propagation rate. We discuss the mechanisms by which the insertion and ejection of the lacZα gene, as well as the mutations in the regulatory region of gene II, influence the efficiency of replication initiation at the (+) strand origin. We also examine the presence and relevance of fast-propagating mutants in phage-displayed peptide libraries.


Subject(s)
Bacteriophage M13/genetics , DNA, Viral/metabolism , Lac Repressors/genetics , 5' Untranslated Regions , Base Sequence , Cloning, Molecular , DNA, Viral/genetics , Enhancer Elements, Genetic , Escherichia coli/virology , Genome, Viral , Lac Repressors/metabolism , Mutagenesis, Site-Directed , Nucleic Acid Conformation , Peptide Library , Virus Replication/physiology
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