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1.
IUCrJ ; 5(Pt 6): 681-698, 2018 Nov 01.
Article in English | MEDLINE | ID: mdl-30443353

ABSTRACT

Hexaferrites are an important class of magnetic oxides with applications in data storage and electronics. Their crystal structures are highly modular, consisting of Fe- or Ba-rich close-packed blocks that can be stacked in different sequences to form a multitude of unique structures, producing large anisotropic unit cells with lattice parameters typically >100 Šalong the stacking axis. This has limited atomic-resolution structure solutions to relatively simple examples such as Ba2Zn2Fe12O22, whilst longer stacking sequences have been modelled only in terms of block sequences, with no refinement of individual atomic coordinates or occupancies. This paper describes the growth of a series of complex hexaferrite crystals, their atomic-level structure solution by high-resolution synchrotron X-ray diffraction, electron diffraction and imaging methods, and their physical characterization by magnetometry. The structures include a new hexaferrite stacking sequence, with the longest lattice parameter of any hexaferrite with a fully determined structure.

2.
Faraday Discuss ; 211(0): 117-131, 2018 10 26.
Article in English | MEDLINE | ID: mdl-30033457

ABSTRACT

Computationally led materials discovery requires efficient methods to generate either exact or approximate crystal structures that span the composition range of a chosen phase space. Here we present a new tool, the Flexible Unit Structure Engine (FUSE), for the generation of approximate 'probe structures' to predict regions of composition space where compounds can be experimentally realised. We then test FUSE by applying it to 42 compositions in the Y3+-Sr2+-Ti4+-O2- phase field. FUSE correctly identifies all of the target compounds in the regions of stability and identifies the exact crystal structure for 8 out of the 10 compositions.

3.
Phys Rev Lett ; 120(7): 076101, 2018 Feb 16.
Article in English | MEDLINE | ID: mdl-29542979

ABSTRACT

Highly corrugated, stepped surfaces present regular 1D arrays of binding sites, creating a complex, heterogeneous environment to water. Rather than decorating the hydrophilic step sites to form 1D chains, water on stepped Cu(511) forms an extended 2D network that binds strongly to the steps but bridges across the intervening hydrophobic Cu(100) terraces. The hydrogen-bonded network contains pentamer, hexamer, and octomer water rings that leave a third of the stable Cu step sites unoccupied in order to bind water H down close to the step dipole and complete three hydrogen bonds per molecule.

4.
Nature ; 546(7657): 280-284, 2017 06 07.
Article in English | MEDLINE | ID: mdl-28593963

ABSTRACT

The discovery of new materials is hampered by the lack of efficient approaches to the exploration of both the large number of possible elemental compositions for such materials, and of the candidate structures at each composition. For example, the discovery of inorganic extended solid structures has relied on knowledge of crystal chemistry coupled with time-consuming materials synthesis with systematically varied elemental ratios. Computational methods have been developed to guide synthesis by predicting structures at specific compositions and predicting compositions for known crystal structures, with notable successes. However, the challenge of finding qualitatively new, experimentally realizable compounds, with crystal structures where the unit cell and the atom positions within it differ from known structures, remains for compositionally complex systems. Many valuable properties arise from substitution into known crystal structures, but materials discovery using this approach alone risks both missing best-in-class performance and attempting design with incomplete knowledge. Here we report the experimental discovery of two structure types by computational identification of the region of a complex inorganic phase field that contains them. This is achieved by computing probe structures that capture the chemical and structural diversity of the system and whose energies can be ranked against combinations of currently known materials. Subsequent experimental exploration of the lowest-energy regions of the computed phase diagram affords two materials with previously unreported crystal structures featuring unusual structural motifs. This approach will accelerate the systematic discovery of new materials in complex compositional spaces by efficiently guiding synthesis and enhancing the predictive power of the computational tools through expansion of the knowledge base underpinning them.

5.
Phys Chem Chem Phys ; 19(11): 7617-7623, 2017 Mar 15.
Article in English | MEDLINE | ID: mdl-28252144

ABSTRACT

Local or global ordering of chiral molecules at a surface is a key step in both chiral separation and heterogeneous enantioselective catalysis. Using density functional theory and scanning probe microscopy results, we find that the accepted structural model for the well known bitartrate on Cu(110) chiral system cannot account for the chiral segregation observed. Instead, we show that this strongly bound, chiral adsorbate changes its adsorption footprint in response to the local environment. The flexible adsorption geometry allows bitartrate to form stable homochiral trimer chains in which the central molecule restructures from a rectangular to an oblique footprint, breaking its internal hydrogen bonds in order to form strong intermolecular hydrogen bonds to neighbouring adsorbates. Racemic structures containing mixed enantiomers do not form strong hydrogen bonds, providing the thermodynamic driving force for the chiral separation that is observed experimentally. This result shows the importance of considering the dynamical response of molecular adsorption footprints at the surface in directing chiral assembly and segregation. The ability of strongly-chemisorbed enantiomers to change footprint depending on the local adsorption environment indicates that supramolecular assemblies at surfaces may exhibit more complex dynamical behaviour than hitherto suspected, which, ultimately, could be tailored to lead to environment and stimuli-responsive chiral surfaces.

6.
J Chem Phys ; 142(10): 101916, 2015 Mar 14.
Article in English | MEDLINE | ID: mdl-25770505

ABSTRACT

Adsorption of thymine on a defined Cu(110) surface was studied using reflection-absorption infrared spectroscopy (RAIRS), temperature programmed desorption (TPD), and scanning tunnelling microscopy (STM). In addition, density functional theory (DFT) calculations were undertaken in order to further understand the energetics of adsorption and self-assembly. The combination of RAIRS, TPD, and DFT results indicates that an upright, three-point-bonded adsorption configuration is adopted by the deprotonated thymine at room temperature. DFT calculations show that the upright configuration adopted by individual molecules arises as a direct result of strong O-Cu and N-Cu bonds between the molecule and the surface. STM data reveal that this upright thymine motif self-assembles into 1D chains, which are surprisingly oriented along the open-packed [001] direction of the metal surface and orthogonal to the alignment of the functional groups that are normally implicated in H-bonding interactions. DFT modelling of this system reveals that the molecular organisation is actually driven by dispersion interactions, which cause a slight tilt of the molecule and provide the major driving force for assembly into dimers and 1D chains. The relative orientations and distances of neighbouring molecules are amenable for π-π stacking, suggesting that this is an important contributor in the self-assembly process.


Subject(s)
Copper/chemistry , Quantum Theory , Thymine/chemistry , Adsorption , Molecular Structure , Surface Properties , Vibration
7.
Phys Chem Chem Phys ; 16(43): 24018-25, 2014 Nov 21.
Article in English | MEDLINE | ID: mdl-25286238

ABSTRACT

Ice formation is a complex cooperative process that is almost invariably catalysed by the presence of an interface on which ice crystals nucleate. As yet there is no clear picture of what factors make a surface particularly good at nucleating ice, but the importance of having a template with a suitable lattice parameter has often been proposed. Here we report the contrasting wetting behaviour of a series of pseudomorphic surfaces, designed to form an ordered template that matches the arrangement of water in a bulk ice Ih(0001) bilayer. The close-packed M(111) surfaces (M = Pt, Pd, Rh, Cu and Ni) form a (√3 × âˆš3) R30° Sn substitutional alloy surface, with Sn atoms occupying sites that match the symmetry of an ice bilayer. The lattice constant of the alloy changes from 4% smaller to 7% greater than the lateral spacing of ice across the series. We show that only the PtSn surface, with a lattice parameter some 7% greater than that of a bulk ice layer, forms a stable water layer, all the other surfaces being non-wetting and instead forming multilayer ice clusters. This observation is consistent with the idea that the repeat spacing of the surface should ideally match the O-O spacing in ice, rather than the bulk ice lattice parameter, in order to form a continuous commensurate water monolayer. We discuss the role of the lattice parameter in stabilising the first layer of water and the factors that lead to formation of a simple commensurate structure rather than an incommensurate or large unit cell water network. We argue that lattice match is not a good criteria for a material to give low energy nucleation sites for bulk ice, and that considerations such as binding energy and mobility of the surface layer are more relevant.

8.
Nat Chem ; 6(4): 343-51, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24651203

ABSTRACT

Porous materials are attractive for separation and catalysis-these applications rely on selective interactions between host materials and guests. In metal-organic frameworks (MOFs), these interactions can be controlled through a flexible structural response to the presence of guests. Here we report a MOF that consists of glycyl-serine dipeptides coordinated to metal centres, and has a structure that evolves from a solvated porous state to a desolvated non-porous state as a result of ordered cooperative, displacive and conformational changes of the peptide. This behaviour is driven by hydrogen bonding that involves the side-chain hydroxyl groups of the serine. A similar cooperative closure (reminiscent of the folding of proteins) is also displayed with multipeptide solid solutions. For these, the combination of different sequences of amino acids controls the framework's response to the presence of guests in a nonlinear way. This functional control can be compared to the effect of single-point mutations in proteins, in which exchange of single amino acids can radically alter structure and function.


Subject(s)
Peptides/chemistry , Hydrogen Bonding , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Protein Conformation , Protein Folding
9.
J Phys Condens Matter ; 24(12): 124102, 2012 Mar 28.
Article in English | MEDLINE | ID: mdl-22394691

ABSTRACT

Water adsorbs and desorbs intact on Pd(111), forming a hydrogen-bonded wetting layer whose structure we examine by low energy electron diffraction (LEED) and He atom scattering (HAS). LEED shows that water forms commensurate (√3 × âˆš3)R30° clusters that aggregate into a partially ordered, approximately (7 × 7) superstructure as the layer completes. HAS indicates that the water layer remains disordered on a local (approximately 10 Å) scale. Based on workfunction measurements and density functional theory simulations we propose that water forms small, flat domains of a commensurate (√3 × âˆš3)R30° water network, separated by disordered domain boundaries containing largely H-down water. This arrangement allows the water layer to adapt its density and relieve the lateral strain associated with adsorbing water in the optimum flat atop adsorption site. We discuss different possibilities for the structure of these domain walls and compare this strain relief mechanism to the highly ordered, large unit cell structures formed on surfaces such as Pt(111).

10.
Science ; 329(5995): 1053-7, 2010 Aug 27.
Article in English | MEDLINE | ID: mdl-20798314

ABSTRACT

Porous materials find widespread application in storage, separation, and catalytic technologies. We report a crystalline porous solid with adaptable porosity, in which a simple dipeptide linker is arranged in a regular array by coordination to metal centers. Experiments reinforced by molecular dynamics simulations showed that low-energy torsions and displacements of the peptides enabled the available pore volume to evolve smoothly from zero as the guest loading increased. The observed cooperative feedback in sorption isotherms resembled the response of proteins undergoing conformational selection, suggesting an energy landscape similar to that required for protein folding. The flexible peptide linker was shown to play the pivotal role in changing the pore conformation.


Subject(s)
Carbon Dioxide/chemistry , Dipeptides/chemistry , Zinc/chemistry , Adsorption , Chemical Phenomena , Crystallization , Diffusion , Hydrogen Bonding , Ligands , Magnetic Resonance Spectroscopy , Models, Molecular , Molecular Dynamics Simulation , Molecular Structure , Porosity , Pressure , Protein Conformation , Protein Folding , Solvents , Thermodynamics , X-Ray Diffraction
11.
Phys Rev Lett ; 101(13): 136404, 2008 Sep 26.
Article in English | MEDLINE | ID: mdl-18851470

ABSTRACT

Superconductivity emerges for the A15 polymorph of the fulleride Cs3C60 upon compression to a pressure of approximately 4 kbar. Using density functional theory we study the bonding in the A15 phase as a function of unit cell volume comparing it to that in the fcc polymorph. We find that, despite its smaller packing density, the bcc-derived A15 phase has both a substantially wider bandwidth for the partially occupied t1u band and a higher density of states at the Fermi level. This result can be traced to the striking differences in the nature of the interanion Tc--the two sphere packings (body centered versus face centered) observed experimentally produce two electronically distinct classes of fulleride superconductors.

12.
Philos Trans A Math Phys Eng Sci ; 366(1862): 55-62, 2008 Jan 13.
Article in English | MEDLINE | ID: mdl-17827126

ABSTRACT

The introduction of mixed valency into extended main-group solids is discussed using the example of hole-doped LiBC, where a combination of experimental measurements and density functional theory calculations is used to understand the observed electronic properties in terms of deviation from the expected rigid-band electronic structure behaviour.

13.
J Chem Phys ; 120(6): 2923-33, 2004 Feb 08.
Article in English | MEDLINE | ID: mdl-15268440

ABSTRACT

High-dimensional, wave packet calculations have been carried out to model the surface temperature dependence of rovibrationally inelastic scattering and dissociation of hydrogen molecules from the Cu(111) surface. Both the molecule and the vibrating surface are treated fully quantum-mechanically. It is found, in agreement with experimental data, that the surface temperature dependence of a variety of dynamical processes has an Arrhenius form with an activation energy dependent on molecular translational energy and on the initial and final molecular states. The activation energy increases linearly with decreasing translational energy below the threshold energy. Above threshold the behavior is more complex. A quasianalytical model is proposed that faithfully reproduces the Arrhenius law and the translational energy dependence of the activation energy. In this model, it is essential to include quantized energy transfer between the surface and the molecule. It further predicts that for any process characterized by a large energy barrier and multiphonon excitation, the linear change in activation energy up to threshold has slope-1. This explains successfully the universal nature of the unit slope found experimentally for H2 and D2 dissociation on Cu.

14.
Nat Mater ; 2(9): 605-10, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12907941

ABSTRACT

Electron correlation controls the properties of important materials such as superconducting and magnetoresistive transition metal oxides and heavy fermion systems. The role of correlation in driving metal-to-insulator transitions assumes further importance because many superconducting materials are located close to such transitions. The nature of the insulating ground state often reveals the dominant interactions in the superconductor, as shown by the importance of the properties of La2CuO4 in understanding the high-temperature-superconducting cuprates. The A3C60 alkali metal fullerides are superconducting systems in which the role of correlation in both the normal state and the superconducting pairing mechanism is controversial, because no magnetic insulator comparable to the superconducting materials has been identified. We describe the first example of a cubic C60(3-) system with degenerate orbitals that adopts the Mott-Hubbard insulating localized electron ground state. Electron repulsion is identified as the interaction that is suppressed on the transition to metallic and superconducting behaviour in the fullerides. This observation is combined with ab initio calculations to demonstrate that it is the orbital degeneracy that allows the superconducting cubic A3C60 fullerides to remain metallic while provoking electron localization in systems with lower symmetry.


Subject(s)
Crystallization/methods , Fullerenes/chemistry , Magnetics , Electric Conductivity , Materials Testing/methods , Molecular Conformation , Temperature
15.
Chem Commun (Camb) ; (12): 1348-9, 2003 Jun 21.
Article in English | MEDLINE | ID: mdl-12841235

ABSTRACT

The synthesis of Li(x)BC (x > 0.5) by high temperature Li deintercalation from LiBC is demonstrated by refinement of X-ray and neutron powder diffraction data--contrary to theoretical expectation no superconductivity above 2K is observed in these materials.

16.
Phys Rev Lett ; 87(22): 226102, 2001 Nov 26.
Article in English | MEDLINE | ID: mdl-11736412

ABSTRACT

The surface temperature dependence of activated inelastic scattering and dissociation of D2 from the Cu(111) surface has been computed using quantum wave-packet methods. It is found, in agreement with experimental data, that the surface temperature dependence generally has an Arrhenius form with an activation energy dependent on molecular translational energy and on the initial and final internal molecular states. The translational energy dependence of the activation energy is linear up to the threshold energy, with an abrupt change thereafter. On the basis of the wave-packet calculations, a model has been developed to explain these findings and highlight their general nature.

17.
Faraday Discuss ; (117): 41-54; discussion 55-64, 2000.
Article in English | MEDLINE | ID: mdl-11272003

ABSTRACT

A diabetic description of charge transfer between atoms and ionic surfaces is presented, specifically examining the F/LiF(100) and F/KI(100) systems for which experiment shows ion formation to be very efficient. Potential energy surfaces describing the energetics for these systems have been generated with a semi-empirical scheme. At the site of charge exchange, there is a curve-crossing between the ground state and the state representing charge capture by the projectile. Quantum dynamics calculations with time-dependent wavepacket methods give an initial ion-formation probability of unity for all cases considered. At lowest energies, the ions cannot escape the surface, giving an effective threshold for negative-ion production very close to that observed in experiment. Re-neutralization by charge transfer back to the conduction band of the solid is also examined.

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