Kinetics and mechanism of the oxidation of hydroxylamine by a {Mn3O4}4+ core in aqueous acidic media.

In this work we report the kinetics of oxidation of hydroxylamine by a trinuclear Mn(IV) oxidant, [Mn(3)(µ-O)(4)(phen)(4)(H(2)O)(2)](4+) (1, phen = 1,10-phenanthroline), in aqueous solution over a pH range 2.0-4.0. The trinuclear Mn(IV) species (1) deprotonates in aqueous solution at physiological pH: 1 ⇌ 2 + H(+); pK(1) = 4.00 (± 0.15) at 25.0 °C, I = 1.0 (M) NaNO(3). Both 1 and 2 are reactive oxidants reacting with the conjugate acid of hydroxylamine, viz. NH(3)OH(+) where the deprotonated oxidant 2 reacts faster. This finding is in contrast to a common observation and belief that protonated oxidants react quicker than their deprotonated analogues. Mn(IV)(3) to Mn(II) transition in the present reaction proceeds through the intervention of a spectrally detected mixed-valent Mn(III)Mn(IV) dimer that quickly collapses to Mn(II). The rate of the reaction was found to be lowered in D(2)O-enriched media in comparison to that in pure H(2)O media. An initial one electron one proton transfer to Mn(IV)(3) (electroprotic; 1e, 1H(+)) could be mechanistically conceived as the rate step. We also demonstrate by means of high level DFT studies that, among the two sets of Mn(IV) atoms in the trinuclear oxidant, the unique one that is coordinated with two phen ligands and two oxo-bridges is reduced to Mn(III) at the rate step. This is explained based on energetic and spin density calculations. Moreover, this result agrees with the charge distribution on the Mn atoms of the trinuclear complex.

Mechanistic studies on the oxidation of ascorbic acid and hydroquinone by a {Mn4O6}4+ core in aqueous media.

Described in this work is the kinetics of oxidation of ascorbic acid and hydroquinone by a tetranuclear Mn(IV) oxidant, [Mn(4)(µ-O)(6)(bipy)(6)](4+) (1(4+), bipy =2,2(/)-bipyridine), in aqueous solution over a wide pH range 1.5-6.0. In particular, below pH 3.0, protonation on the oxo-bridge of 1(4+) results in the formation of [Mn(4)(µ-O)(5)(µ-OH)(bipy)(6)](5+) (1H(5+)) as an additional oxidant over 1(4+). Both ascorbic acid and ascorbate whereas only hydroquinone and none of its protolytic species were found to be reactive reducing agents in these reactions. Analysis of the rate data clearly established that the oxo-bridge protonated oxidant 1H(5+) is kinetically far more superior to 1(4+) in oxidizing ascorbic acid and hydroquinone. Rates of these reactions are substantially lowered in D(2)O-enriched media in comparison to that in H(2)O media. An initial one electron one proton transfer electroprotic rate step could be mechanistically conceived. DFT studies established that among the two sets of terminal and central Mn(IV) atoms in the tetranuclear oxidant, one of the two terminal Mn(IV) is reduced to Mn(III) at the rate step that we can intuitively predict considering the probable positive charge distribution on the Mn(IV) atoms.

Optimized hydrophobic interactions and hydrogen bonding at the target-ligand interface leads the pathways of drug-designing.

BACKGROUND: Weak intermolecular interactions such as hydrogen bonding and hydrophobic interactions are key players in stabilizing energetically-favored ligands, in an open conformational environment of protein structures. However, it is still poorly understood how the binding parameters associated with these interactions facilitate a drug-lead to recognize a specific target and improve drugs efficacy. To understand this, comprehensive analysis of hydrophobic interactions, hydrogen bonding and binding affinity have been analyzed at the interface of c-Src and c-Abl kinases and 4-amino substituted 1H-pyrazolo [3, 4-d] pyrimidine compounds. METHODOLOGY: In-silico docking studies were performed, using Discovery Studio software modules LigandFit, CDOCKER and ZDOCK, to investigate the role of ligand binding affinity at the hydrophobic pocket of c-Src and c-Abl kinase. Hydrophobic and hydrogen bonding interactions of docked molecules were compared using LigPlot program. Furthermore, 3D-QSAR and MFA calculations were scrutinized to quantify the role of weak interactions in binding affinity and drug efficacy. CONCLUSIONS: The in-silico method has enabled us to reveal that a multi-targeted small molecule binds with low affinity to its respective targets. But its binding affinity can be altered by integrating the conformationally favored functional groups at the active site of the ligand-target interface. Docking studies of 4-amino-substituted molecules at the bioactive cascade of the c-Src and c-Abl have concluded that 3D structural folding at the protein-ligand groove is also a hallmark for molecular recognition of multi-targeted compounds and for predicting their biological activity. The results presented here demonstrate that hydrogen bonding and optimized hydrophobic interactions both stabilize the ligands at the target site, and help alter binding affinity and drug efficacy.

Robust recognition of malonate and 2-amino-4-picolinium in conjunction with M(II) as a triad (M = Ni/Co/Mn): role of this highly stable hydrogen-bonded motif in driving supramolecular self-assembly.

The crystal lattice of the three isostructural compounds , (C(6)H(8)N(2)H)(2)[M(C(3)H(2)O(4))(2)(H(2)O)(2)].4H(2)O (C(6)H(8)N(2)H = protonated 2-amino-4-picoline, M = Ni/Co/Mn, C(3)H(4)O(4) = malonate dianion; hereafter, malonate) is formed by supramolecular 2D layers. Hydrogen-bonding, pi...pi and lone pair...pi interactions play crucial role in organizing monomeric [M(II)(mal)(2)(H(2)O)(2)] units into 2D sheets along the ab plane, through the self-association between two different supramolecular building blocks, namely a tetrameric water cluster including metal-coordinated water molecules, and R(2)(2)(8) and R(2)(2)(7) hydrogen-bonded recognition synthons between 2-amino-4-picolinium and malonate. DFT calculations clearly show that the robust 2-amino-4-picolinium/malonate hydrogen-bonded motif drives the self-assembly of the supramolecular network observed.

Supramolecular lone pair-pi/pi-pi/pi-anion assembly in a Mg(II)-malonate-2-aminopyridine-nitrate ternary system.

The solid-state structure of an alkaline-earth metal complex reveals the formation of a remarkable supramolecular framework based on concurrent lone pair-pi, pi-pi, and pi-anion interactions whose stability has been investigated by density functional theory.

Mechanistic studies on oxidation of hydrogen peroxide by an oxo-bridged diiron complex in aqueous acidic media.

A novel Raman spectroscopic model for the dinuclear iron site in ribonucleotide reductase and met-hemerythrin, [Fe2(micro-O)(phen)4(H2O)2]4+, 1, (phen = 1,10-phenanthroline) quantitatively oxidizes hydrogen peroxide to dioxygen via an inner-sphere electron transfer pathway. Although 1 deprotonates to form [Fe2(micro-O)(phen)4(H2O)(OH)]3+ (2) and [Fe2(micro-O)(phen)4(OH)2]2+ (3) in aqueous media, neither 2 nor 3 is reactive in oxidising H2O2. In the presence of excess phen, no phen-releasing equilibria from , and exist. Kinetic evidence of the generation of a (micro-1,2 peroxo)diiron(III,III) intermediate, prior to electron transfer, were obtained. Significant rate retardation in D2O media suggests proton coupled electron transfer (PCET) in the rate determining step of the title redox reaction.

Mechanistic studies on oxidation of nitrite by a {Mn3O4}4+ core in aqueous acidic media.

[MnIV3(micro-O)4(phen)4(H2O)2]4+ (, phen=1,10-phenanthroline) equilibrates with its conjugate base [Mn3(micro-O)4(phen)4(H2O)(OH)]3+ in aqueous solution. Among the several synthetic multinuclear oxo- and/or carboxylato bridged manganese complexes known to date containing metal-bound water, to the best of our knowledge, only deprotonates (right harpoon over left harpoon+H+, pKa=4.00 (+/-0.15) at 25.0 degrees C, I=1.0 M, maintained with NaNO3) at physiological pH. An aqueous solution of quantitatively oxidises NIII (HNO2 and NO2-) to NO3- within pH 2.3-4.1, the end manganese state being MnII. Both and are reactive oxidants in the title redox. In contrast to a common observation that anions react quicker than their conjugate acids in reducing metal centred oxidants, HNO2 reacts faster than NO2- in reducing or . The observed rates of nitrite oxidation do not depend on the variation of 1,10-phenanthroline content of the solution indicating that the MnIV-bound phen ligands do not dissociate in solution under experimental conditions. Also, there was no kinetic evidence for any kind of pre-equilibrium replacement of MnIV-bound water by nitrite prior to electron transfer which indicates the substitution-inert nature of the MnIV-bound waters and the 1,10-phenanthroline ligands. The MnIV3 to MnII transition in the present observation proceeds through the intermediate generation of the spectrally characterised mixed-valent MnIIIMnIV dimer that quickly produces MnII. The reaction rates are substantially lowered when solvent H2O is replaced by D2O and a rate determining 1e, 1H+ electroprotic mechanism is proposed.

Mechanistic studies on oxidation of L-ascorbic acid by an oxo-bridged diiron complex in aqueous acidic media.

[Fe2(micro-O)(phen)4(H2O)2]4+ (1) (Fig. 1, phen = 1,10-phenanthroline) equilibrates with [Fe2(micro-O)(phen)4(H2O)(OH)]3+ (2) and [Fe2(micro-O)(phen)4(OH)2]2+ (3) in aqueous solution in the presence of excess phen, where no phen-releasing equilibria from 1, 2 and 3 exist. 1 quantitatively oxidizes ascorbic acid (H2A) to dehydroascorbic acid (A) in the pH range 3.00-5.50 in the presence of excess phen, which buffers the reaction within 0.05 pH units and ensures complete formation of end iron product ferroin, [Fe(phen)3]2+. The reactive species are 1, 2 and HA- and the reaction proceeds through an initial 1 : 1 inner-sphere adduct formation between 1 and 2 with HA-, followed by a rate limiting outer-sphere one electron one proton (electroprotic) transfer from a second HA- to the ascorbate-unbound iron(III).