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1.
Eur J Med Chem ; 186: 111829, 2020 Jan 15.
Article in English | MEDLINE | ID: mdl-31757526

ABSTRACT

The implication of DNA methylation in cancer is today clearly established. Despite that nucleoside analogues are currently used for leukaemia treatment, their low stability in physiological conditions and their lack of selectivity arise the need for the identification of non-nucleoside DNA methyltransferase inhibitors. Here, we describe the synthesis and pharmacological characterisation of a novel class of DNA methyltransferase inhibitors: the 3-halo-3-nitroflavanones. We showed that 3-bromo-3-nitroflavanones 3b and 4a have a micromolar DNMT inhibition and an increased potency in a cell reporter model. Interestingly they are significantly more stable than the reference compounds and induce a low cytotoxicity, supporting them as new candidates for the development of non-cytotoxic cell-reprogramming epi-drugs for anticancer treatment.


Subject(s)
Antineoplastic Agents/pharmacology , DNA (Cytosine-5-)-Methyltransferases/antagonists & inhibitors , Enzyme Inhibitors/pharmacology , Flavanones/pharmacology , Nitro Compounds/pharmacology , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/chemistry , Cell Line, Tumor , Cell Proliferation/drug effects , DNA (Cytosine-5-)-Methyltransferases/metabolism , DNA Methylation/drug effects , Dose-Response Relationship, Drug , Drug Screening Assays, Antitumor , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Flavanones/chemistry , HCT116 Cells , Humans , Molecular Structure , Nitro Compounds/chemical synthesis , Nitro Compounds/chemistry , Structure-Activity Relationship
2.
Article in English | MEDLINE | ID: mdl-28807907

ABSTRACT

De novo pyrimidine biosynthesis is a key metabolic pathway involved in multiple biosynthetic processes. Here, we identified an original series of 3-(1H-indol-3-yl)-2,3-dihydro-4H-furo[3,2-c]chromen-4-one derivatives as a new class of pyrimidine biosynthesis inhibitors formed by two edge-fused polycyclic moieties. We show that identified compounds exhibit broad-spectrum antiviral activity and immunostimulatory properties, in line with recent reports linking de novo pyrimidine biosynthesis with innate defense mechanisms against viruses. Most importantly, we establish that pyrimidine deprivation can amplify the production of both type I and type III interferons by cells stimulated with retinoic acid-inducible gene 1 (RIG-I) ligands. Altogether, our results further expand the current panel of pyrimidine biosynthesis inhibitors and illustrate how the production of antiviral interferons is tightly coupled to this metabolic pathway. Functional and structural similarities between this new chemical series and dicoumarol, which was reported before to inhibit pyrimidine biosynthesis at the dihydroorotate dehydrogenase (DHODH) step, are discussed.


Subject(s)
Antiviral Agents/pharmacology , Chikungunya virus/immunology , Chromones/pharmacology , Enzyme Inhibitors/pharmacology , Indoles/pharmacology , Interferon Type I/biosynthesis , Interferons/biosynthesis , Measles virus/immunology , Pyrimidines/biosynthesis , Antiviral Agents/chemistry , Cell Line , Chromones/chemistry , Dicumarol/pharmacology , Dihydroorotate Dehydrogenase , Enzyme Inhibitors/chemistry , HEK293 Cells , Humans , Immunity, Innate/immunology , Indoles/chemistry , Interferon Type I/immunology , Interferons/immunology , Oxidoreductases Acting on CH-CH Group Donors/antagonists & inhibitors , Structure-Activity Relationship , Interferon Lambda
3.
FEBS Lett ; 591(6): 863-874, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28186330

ABSTRACT

Telomerase is an almost universal cancer target that consists minimally of a core protein human telomerase reverse transcriptase (hTERT) and a RNA component human telomerase RNA (hTR). Some inhibitors of this enzyme are thought to function by the covalent binding to one or several cysteine residues; however, this inhibition mechanism has never been investigated because of the difficulty in producing telomerase. In this study, we use a recent method to produce recombinant hTERT to analyze the effect of cysteine-reactive inhibitors on telomerase. Using mass spectrometry and mutagenesis analysis, we identify several targeted residues in separated domains of the hTERT protein and show that cysteine-reactive reagents abolish the interaction with the CR4/5 region of hTR.


Subject(s)
Cysteine/metabolism , Recombinant Proteins/metabolism , Reverse Transcriptase Inhibitors/metabolism , Telomerase/metabolism , Amino Acid Sequence , Binding Sites/genetics , Cysteine/chemistry , Cysteine/genetics , Humans , Mass Spectrometry/methods , Models, Molecular , Molecular Structure , Mutagenesis , Protein Binding , Protein Domains , Recombinant Proteins/chemistry , Reverse Transcriptase Inhibitors/chemistry , Reverse Transcriptase Inhibitors/pharmacology , Sequence Homology, Amino Acid , Structure-Activity Relationship , Telomerase/antagonists & inhibitors , Telomerase/genetics
4.
Anticancer Res ; 36(8): 3889-98, 2016 Aug.
Article in English | MEDLINE | ID: mdl-27466491

ABSTRACT

Flavone-8-acetic acid (FAA) is a potent antivascular agent in mice but not in humans. Assuming that FAA was bioactivated in mice, we previously demonstrated that 6-OH-FAA was formed from FAA by mouse microsomes but not by human microsomes; its antivascular activity was 2.1- to 15.9-fold stronger than that of FAA, and its antivascular activity was mediated through the Ras homolog gene family (Rho) protein kinase A (RhoA) pathway. The present work aimed to study FAA metabolism in order to verify if 6-OH-FAA is formed in mice. Using synthesized standards and high-performance liquid chromatography (HPLC) coupled with ultraviolet (UV) detection and mass spectrometry (MS) analysis, we herein demonstrated, for the first time, that in vitro FAA and its monohydroxylated derivatives could directly undergo phase II metabolism forming glucuronides, and two FAA epoxides were mostly scavenged by NAC and GSH forming corresponding adducts. FAA was metabolized in mice. Several metabolites were formed, in particular 6-OHFAA. The antitumor activity of 6-OH-FAA in vivo is worthy of investigation.


Subject(s)
Antineoplastic Agents/isolation & purification , Antineoplastic Agents/metabolism , Flavonoids/isolation & purification , Flavonoids/metabolism , Animals , Antineoplastic Agents/therapeutic use , Chromatography, High Pressure Liquid , Flavonoids/therapeutic use , Glucuronides/biosynthesis , Glucuronides/metabolism , Glutathione/biosynthesis , Glutathione/metabolism , Humans , Mass Spectrometry , Mice , Spectrophotometry, Ultraviolet
5.
Anticancer Drugs ; 27(5): 398-406, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26901071

ABSTRACT

Flavone-8-acetic acid (FAA) has been proved to be a potent vascular-disrupting agent in mice. Unfortunately, FAA did not produce any anticancer activity in clinical trials. Previously, we had reported that FAA is metabolized by mouse microsomes into six metabolites, whereas it was poorly metabolized by human microsomes, with fewer metabolites formed in lesser amounts. Especially, 6-OH-FAA was not formed by human microsomes. In this work, two major available metabolites, 4'-OH-FAA and 6-OH-FAA, were tested and compared with the parent compound FAA for their potential antivascular activities in vitro. The ability of the products to induce morphological changes, disrupt preformed capillaries of EA.hy926 endothelial cells and inhibit tubulin polymerization in vitro was assessed. The action mechanism was determined using the RhoA and Rac1 inhibitors. At 25 µg/ml, 6-OH-FAA induced morphological changes and membrane blebbing, whereas 300 µg/ml of FAA and 4'-OH-FAA slightly changed the morphology without inducing membrane blebbing. At 300 µg/ml, 6-OH-FAA produced morphological changes that were 2.1-6.9-fold greater than that produced by FAA and 4'-OH-FAA, an effect that was consistent with its much greater inhibitory effect on tubulin polymerization compared with FAA and 4'-OH-FAA. 6-OH-FAA significantly disrupted the EA.hy926 cell capillaries. 6-OH-FAA activities were prevented in EA.hy926 cells pretreated with RhoA, but not Rac1, inhibitor. In this short communication we report for the first time that, in vitro, 6-OH-FAA, a mouse-specific FAA metabolite, exhibits significantly stronger antivascular activities compared with FAA and 4'-OH-FAA, which are mediated through the RhoA kinase pathway.


Subject(s)
Angiogenesis Inhibitors/pharmacology , Flavonoids/pharmacology , Angiogenesis Inhibitors/metabolism , Animals , Capillaries/drug effects , Capillaries/physiology , Cell Line, Tumor , Cell Proliferation , Endothelial Cells/cytology , Endothelial Cells/drug effects , Endothelium, Vascular/cytology , Endothelium, Vascular/drug effects , Flavonoids/metabolism , Humans , Mice , Polymerization , Tubulin/chemistry
6.
Antiviral Res ; 125: 58-62, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26593978

ABSTRACT

There is imperious need for efficient therapies against ubiquitous and life-threatening respiratory viruses, foremost among them being the human respiratory syncytial virus (hRSV). Several research groups who performed functional screens for broad-spectrum antivirals identified compounds targeting the de novo pyrimidine biosynthesis pathway. Despite their strong antiviral activity in vitro, whether such antimetabolites are effective in vivo remains highly controversial. Here, we evaluated two potent pyrimidine biosynthesis inhibitors developed in our laboratory, IPPA17-A04 and GAC50, in a model of mild hRSV-infection in cynomolgus macaques. In this model, hRSV replication is restricted to the epithelium of the upper respiratory tract, and is compatible with a topical treatment by intranasal sprays. The local administration of palivizumab, a neutralizing anti-hRSV antibody used in clinics, significantly reduced virus replication. In contrast, pyrimidine biosynthesis inhibitors did not show any inhibitory effect on hRSV growth when delivered topically as experimented in our model. Our results should help to better define the potential applications of this class of antimetabolites in the treatment of viral infections.


Subject(s)
Antiviral Agents/pharmacology , Pyrimidines/antagonists & inhibitors , Respiratory Syncytial Virus Infections/drug therapy , Respiratory Syncytial Virus, Human/drug effects , Administration, Intranasal , Animals , Antimetabolites/pharmacology , Dihydroorotate Dehydrogenase , Disease Models, Animal , Hep G2 Cells , Humans , Macaca , Oxidoreductases Acting on CH-CH Group Donors/antagonists & inhibitors , Palivizumab/pharmacology , Pyrimidines/biosynthesis , Respiratory Syncytial Virus Infections/metabolism , Respiratory Syncytial Virus Infections/virology , Respiratory Syncytial Virus, Human/growth & development , Respiratory Syncytial Virus, Human/physiology , Virus Replication/drug effects
7.
PLoS Pathog ; 9(10): e1003678, 2013.
Article in English | MEDLINE | ID: mdl-24098125

ABSTRACT

Searching for stimulators of the innate antiviral response is an appealing approach to develop novel therapeutics against viral infections. Here, we established a cell-based reporter assay to identify compounds stimulating expression of interferon-inducible antiviral genes. DD264 was selected out of 41,353 compounds for both its immuno-stimulatory and antiviral properties. While searching for its mode of action, we identified DD264 as an inhibitor of pyrimidine biosynthesis pathway. This metabolic pathway was recently identified as a prime target of broad-spectrum antiviral molecules, but our data unraveled a yet unsuspected link with innate immunity. Indeed, we showed that DD264 or brequinar, a well-known inhibitor of pyrimidine biosynthesis pathway, both enhanced the expression of antiviral genes in human cells. Furthermore, antiviral activity of DD264 or brequinar was found strictly dependent on cellular gene transcription, nuclear export machinery, and required IRF1 transcription factor. In conclusion, the antiviral property of pyrimidine biosynthesis inhibitors is not a direct consequence of pyrimidine deprivation on the virus machinery, but rather involves the induction of cellular immune response.


Subject(s)
Alphavirus Infections/metabolism , Antiviral Agents/pharmacology , Chikungunya virus/metabolism , Immunity, Innate/drug effects , Pyrimidines/biosynthesis , Alphavirus Infections/drug therapy , Alphavirus Infections/genetics , Alphavirus Infections/immunology , Animals , Antiviral Agents/chemistry , Chikungunya Fever , Chikungunya virus/genetics , Chikungunya virus/immunology , Chlorocebus aethiops , HeLa Cells , Humans , Immunity, Innate/immunology , Interferon Regulatory Factor-1/genetics , Interferon Regulatory Factor-1/immunology , Interferon Regulatory Factor-1/metabolism , Pyrimidines/immunology , Vero Cells
8.
Biochim Biophys Acta ; 1833(6): 1316-28, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23481040

ABSTRACT

Acute myeloid leukemia (AML) is a deadly disease characterized by the clonal expansion and accumulation of hematopoietic stem cells arrested at various stages of development. Clinical research efforts are currently focusing on targeted therapies that induce apoptosis in AML cells. Herein, the effects and mechanisms of the novel flavone 3,3'-diamino-4'-methoxyflavone (DD1) on AML cell dysfunction were investigated in AML cells (monoblast U937, myelomonocyte OCI-AML3, promyelocyte NB4, myeloblast HL-60) and blood samples from patients with AML. The administration of DD1 inhibited proliferation and induced death of AML cell lines and reduced the clonogenic activity of AML, but not normal, blood cells. The flavone's apoptotic action in U937 cells was associated with recruitment of mitochondria, Bax activation, Bad dephosphorylation (at Ser(136)), activation of caspases -8, -9, and -3 and cleavage of the caspase substrate PARP-1. DD1 induced a marked decrease in (i) Thr(389)-phosphorylation and (ii) protein levels of the caspase-3 substrate P70 ribosomal S6 kinase (P70S6K, known for its ability to phosphorylate Bad). Caspase-dependent apoptosis and P70S6K degradation were simultaneously prevented by the caspase inhibitors. Importantly, DD1 was shown to directly inhibit the proteasome's chymotrypsin-like activity in U937 cells. Apoptotic activity of the proteasome inhibitor bortezomib was also related to Bax activation and P70S6K downregulation. Accordingly, DD1 failed to induce P70S6K cleavage, Bax stimulation and apoptosis in K562 cells resistant to bortezomib. These results indicate that DD1 has the potential to eradicate AML cells and support a critical role for Bax and P70S6K in DD1-mediated proteasome inhibition and apoptosis of leukemia cells.


Subject(s)
Apoptosis/drug effects , Drug Resistance, Neoplasm/drug effects , Flavonoids/pharmacology , Leukemia, Myeloid, Acute/pathology , Proteasome Inhibitors/pharmacology , Ribosomal Protein S6 Kinases, 70-kDa/antagonists & inhibitors , Adult , Aged , Aged, 80 and over , Antineoplastic Agents/pharmacology , Antineoplastic Combined Chemotherapy Protocols , Blotting, Western , Boronic Acids/pharmacology , Bortezomib , Caspases/metabolism , Cell Cycle/drug effects , Cell Proliferation/drug effects , Colony-Forming Units Assay , Flavonoids/chemistry , Flow Cytometry , Humans , Immunoenzyme Techniques , Leukemia, Myeloid, Acute/drug therapy , Leukemia, Myeloid, Acute/metabolism , Membrane Potential, Mitochondrial/drug effects , Middle Aged , Phosphorylation/drug effects , Proto-Oncogene Proteins c-bcl-2/metabolism , Pyrazines/pharmacology , Ribosomal Protein S6 Kinases, 70-kDa/metabolism , Tumor Cells, Cultured , bcl-2-Associated X Protein/metabolism
9.
Eur J Med Chem ; 54: 22-32, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22647220

ABSTRACT

To find new and better antivascular agents for cancer therapy, a series of combretastatin A4 (CA4) analogs were prepared from 1,3-diaryl-2-nitroprop-1-enes (6-12) obtained in a two-step synthesis from appropriate arylaldehydes and 2-aryl-1-nitroethanes (4 or 5). Treatment of these 1,3-diaryl-2-nitroprop-1-enes 6-12 by sodium azide in DMSO yielded the targeted compounds. The synthesized 1,2,3-triazoles disubstituted in 4- and 5-positions by one benzyl group and one aryl nucleus have also been tested for biological activities involved in antivascular action. It was found that several new compounds exhibited interesting biological activities in the nanomolar or low micromolar range, in terms of rounding up of endothelial cells, inhibition of tubulin polymerization, and cytotoxicity on B16 melanoma cancer cells. In silico docking studies of 11 and 19 within the active site of tubulin were also carried out in order to rationalize the inhibitory properties of these compounds and further understand their inhibition mechanism. In vivo evaluation of compounds 11 and 19 in mice bearing colon 26 carcinoma indicated modest anticancer activity.


Subject(s)
Antineoplastic Agents/chemistry , Antineoplastic Agents/pharmacology , Stilbenes/chemistry , Triazoles/chemistry , Triazoles/pharmacology , Tubulin/chemistry , Animals , Antineoplastic Agents/chemical synthesis , Antineoplastic Agents/metabolism , Catalytic Domain , Cell Line, Tumor , Endothelial Cells/drug effects , Female , Humans , Melanoma, Experimental/drug therapy , Melanoma, Experimental/pathology , Mice , Molecular Docking Simulation , Protein Multimerization/drug effects , Protein Structure, Quaternary , Stereoisomerism , Structure-Activity Relationship , Triazoles/chemical synthesis , Triazoles/metabolism , Xenograft Model Antitumor Assays
10.
Chembiochem ; 12(9): 1337-45, 2011 Jun 14.
Article in English | MEDLINE | ID: mdl-21633996

ABSTRACT

DNA methylation is involved in the regulation of gene expression and plays an important role in normal developmental processes and diseases, such as cancer. DNA methyltransferases are the enzymes responsible for DNA methylation on the position 5 of cytidine in a CpG context. In order to identify and characterize novel inhibitors of these enzymes, we developed a fluorescence-based throughput screening by using a short DNA duplex immobilized on 96-well plates. We have screened 114 flavones and flavanones for the inhibition of the murine catalytic Dnmt3a/3L complex and found 36 hits with IC(50) values in the lower micromolar and high nanomolar ranges. The assay, together with inhibition tests on two other methyltransferases, structure-activity relationships and docking studies, gave insights on the mechanism of inhibition. Finally, two derivatives effected zebrafish embryo development, and induced a global demethylation of the genome, at doses lower than the control drug, 5-azacytidine.


Subject(s)
DNA (Cytosine-5-)-Methyltransferases/antagonists & inhibitors , Embryonic Development/drug effects , Enzyme Inhibitors/pharmacology , Small Molecule Libraries/pharmacology , Zebrafish/embryology , Animals , Base Sequence , Crystallography, X-Ray , DNA (Cytosine-5-)-Methyltransferases/chemistry , Mice , Models, Molecular , Molecular Sequence Data , Small Molecule Libraries/chemistry
11.
Biochemistry ; 50(22): 5058-66, 2011 Jun 07.
Article in English | MEDLINE | ID: mdl-21548574

ABSTRACT

Etoposide is a widely prescribed anticancer drug that stabilizes covalent topoisomerase II-cleaved DNA complexes. The drug contains a polycyclic ring system (rings A-D), a glycosidic moiety at C4, and a pendant ring (E-ring) at C1. Interactions between human topoisomerase IIα and etoposide in the binary enzyme--drug complex appear to be mediated by substituents on the A-, B-, and E-rings of etoposide. These protein--drug contacts in the binary complex have predictive value for the actions of etoposide within the ternary topoisomerase IIα--drug--DNA complex. Although the D-ring of etoposide does not appear to contact topoisomerase IIα in the binary complex, etoposide derivatives with modified D-rings display reduced cytotoxicity against murine leukemia cells [Meresse, P., et al. (2003) Bioorg. Med. Chem. Lett. 13, 4107]. This finding suggests that alterations in the D-ring may affect etoposide activity toward topoisomerase IIα in the ternary enzyme--drug--DNA complex. Therefore, to address the potential contributions of the D-ring to the activity of etoposide, we characterized drug derivatives in which the C13 carbonyl was moved to the C11 position (retroetoposide and retroDEPT) or the D-ring was opened (D-ring diol). All of the D-ring alterations decreased the ability of etoposide to enhance DNA cleavage mediated by human topoisomerase IIα in vitro and in cultured cells. They also weakened etoposide binding in the ternary enzyme--drug--DNA complex and altered sites of enzyme-mediated DNA cleavage. On the basis of these findings, we propose that the D-ring of etoposide has important interactions with DNA in the ternary topoisomerase II cleavage complex.


Subject(s)
Antigens, Neoplasm/chemistry , Antineoplastic Agents, Phytogenic/chemistry , DNA Topoisomerases, Type II/chemistry , DNA-Binding Proteins/chemistry , DNA/chemistry , Etoposide/chemistry , Antigens, Neoplasm/metabolism , Antineoplastic Agents, Phytogenic/metabolism , Cell Line, Tumor , DNA/metabolism , DNA Cleavage , DNA Topoisomerases, Type II/metabolism , DNA-Binding Proteins/metabolism , Drug Interactions , Etoposide/metabolism , Humans , Saccharomyces cerevisiae/metabolism
12.
FASEB J ; 25(8): 2831-42, 2011 Aug.
Article in English | MEDLINE | ID: mdl-21566207

ABSTRACT

The transmembrane metalloprotease aminopeptidase-N (APN)/CD13 is overexpressed in various solid and hematological malignancies in humans, including acute myeloid leukemia (AML) and is thought to influence tumor progression. Here, we investigated the contribution of APN/CD13 to the regulation of growth and survival processes in AML cells in vitro. Anti-CD13 monoclonal antibodies MY7 and SJ1D1 (which do not inhibit APN activity) and WM15 (an APN-blocking antibody) inhibited the growth of the AML cell line U937 and induced apoptosis, as evidenced by cell accumulation in the sub-G(1) phase, DNA fragmentation, and phosphatidylserine externalization. Isotype-matched IgG1 and the APN/CD13 enzymatic inhibitors bestatin and 2',3-dinitroflavone-8-acetic acid, were ineffective. Internalization of CD13-MY7 complex into cells was followed by mitochondrial membrane depolarization, Bcl-2 and Mcl-1 down-regulation, Bax up-regulation, caspase-9, caspase-8, and caspase-3 activation, and cleavage of the caspase substrate PARP-1. The broad-spectrum caspase inhibitor Z-VAD-fmk and the caspase-9- and caspase-8-specific inhibitors significantly attenuated apoptosis. CD13 ligation also induced apoptosis and PARP-1 cleavage in primary AML blasts, whereas normal blood cells were not affected. Overall, these data provide new evidence that CD13 can serve as a target for inducing caspase-dependent apoptosis in AML (independently of its APN activity). These findings may have implications for tumor biology and treatment.


Subject(s)
CD13 Antigens/antagonists & inhibitors , Leukemia, Myeloid, Acute/enzymology , Leukemia, Myeloid, Acute/pathology , Adult , Aged , Aged, 80 and over , Antibodies, Monoclonal/pharmacology , Apoptosis/drug effects , Apoptosis/physiology , CD13 Antigens/immunology , CD13 Antigens/physiology , Caspases/metabolism , Cell Proliferation/drug effects , Cell Survival/drug effects , Enzyme Inhibitors/pharmacology , Female , Humans , In Vitro Techniques , Leukemia, Myeloid, Acute/therapy , MAP Kinase Kinase 1/antagonists & inhibitors , Male , Membrane Potential, Mitochondrial , Middle Aged , Myeloid Cell Leukemia Sequence 1 Protein , Phosphoinositide-3 Kinase Inhibitors , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/metabolism , Protease Inhibitors/pharmacology , Proto-Oncogene Proteins c-akt/antagonists & inhibitors , Proto-Oncogene Proteins c-bcl-2/metabolism , U937 Cells , Young Adult , bcl-2-Associated X Protein/metabolism
13.
Article in English | MEDLINE | ID: mdl-18401045

ABSTRACT

Beta-nitroalkenyl meso-tetraphenylporphyrins [beta-TPPCHC(NO(2))R)], as free-bases and Zn(II) complexes, were studied by electrospray mass spectrometry (ESI-MS). Under this ionisation condition the [M + H](+) ions are formed. The fragmentation pattern of the resulting [M + H](+) ions were studied by electrospray tandem mass spectrometry (ESI-MS/MS). The ESI-MS/MS of beta- nitroalkenylporphyrins, either as free-bases or as Zn(II) complexes, show several interesting features, distinct from the typical behaviour of nitro compounds. For the studied compounds, common main fragmentation patterns are observed, namely characteristic losses of NO(2), HNO(2), 2OH, RNO(2), RCNO, RCNO(2), RCH(2)NO(2), C(6)H(5) plus NO(2) and the formation of the protonated macrocycle, [TPP + H](+) or [ZnTPP + H](+). However, depending on the presence or absence of the metal and the nature of the R substituent, important differences are observed on the relative abundances of the ions formed by the same fragmentation pathway. The presence of bromine in the alkenyl group leads to a peculiar behaviour, since the main fragmentation pattern corresponds to the combined elimination of the bromine atom with the typical nitro group fragments. When R = Br, the loss of the nitro group occurs in low relative abundance (11-16%). However, when R = CH(3), the relative abundance of the ion due to the loss of HNO(2) changes drastically from 100%, observed for the free-base porphyrin, to 29% in the case of the Zn(II) complex. These variations of the relative abundance of the fragment corresponding to the loss of the nitro moiety (typically considered as a diagnostic fragment) can induce to an erroneous interpretation of their MS/MS spectra. Some fragmentations are observed only for the free-base porphyrins, namely the loss of CH(NO(2)R and HNO(2) plus C(2)H(2), while the loss of OH, H(2)O, OH plus H(2)O and RCCH plus H(2)O is observed only for the complexes. Unusual and unexpected fragmentations are also observed, namely the losses of RCNO, RCNO(2) and HNO(2) plus C(2)H(2). This work demonstrates that valuable structural information about the beta-nitroalkenyl substituents linked to meso- tetraarylporphyrins can be achieved using MS/MS. These results can also be useful for the interpretation of the mass spectra of other nitroalkenyl substituted compounds.


Subject(s)
Metalloporphyrins/chemistry , Porphyrins/chemistry , Spectrometry, Mass, Electrospray Ionization , Alkenes/chemistry , Drug Design , Humans , Nitrogen/chemistry
14.
Rapid Commun Mass Spectrom ; 21(20): 3373-86, 2007.
Article in English | MEDLINE | ID: mdl-17891752

ABSTRACT

The experimental anticancer agent flavone-8-acetic acid (FAA) is metabolized into several monohydroxylated derivatives using mouse microsomes. Because these metabolites could be involved in the biological effects of FAA, the aim of this study was to characterize all its possible monohydroxylated derivatives. To do so, we have developed a methodology using reversed-phase high-performance liquid chromatography (RP-HPLC) coupled with ultraviolet (UV) detection and mass spectrometry (MS) to analyze and identify FAA derivatives hydroxylated at the 2', 3', 4', 3, 5, 6, or 7 position. In RP-HPLC, 4'-, 3'-, 2'-, 6-, and 7-OH-FAA eluted before FAA, whereas 3- and 5-OH-FAA eluted after FAA. UV spectra showed a bathochromic shift of band I for all derivatives and of band II for 5- and 6-OH-FAA. In addition, the position of the OH group could be determined by the presence of certain product ions in MS. Ions at m/z 133 and 151 were specific for 2'-, 3'-, 4'-, and 3-OH-FAA, whereas the ion at m/z 177 was specific for 3-OH-FAA only. The ions m/z 133, 151 and 167 were specific for 2'-OH-FAA. Ions at m/z 149 were specific for the presence of the OH group on cycle A only (i.e., 5-, 6- or 7-OH-FAA). The presence of both product ions m/z 149 and 179 were specific for 7-OH-FAA. Finally, ions at m/z 149 and several product ions of even m/z values were specific for 5-OH-FAA. In conclusion, the methodology described can be used to identify all possible monohydroxylated FAA derivatives.


Subject(s)
Antineoplastic Agents/chemistry , Chromatography, High Pressure Liquid , Flavonoids/chemistry , Spectrometry, Mass, Electrospray Ionization/methods , Spectrophotometry, Ultraviolet
15.
Drug Metab Dispos ; 35(11): 2023-34, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17664249

ABSTRACT

Flavone-8-acetic acid (FAA) is a potent anticancer agent in mouse but has not shown activity in humans. Because FAA metabolism could play a role in this interspecies difference, our aim was to identify the metabolites formed in vitro using mouse microsomes compared with those in human microsomes. Mouse microsomes produced six metabolites as detected by reversed-phase high-performance liquid chromatography-mass spectrometry (MS). Three metabolites were identified as the 3'-, 4'-, or 6-hydroxy-FAA, by comparison with retention times and UV and MS spectra of standards. Two metabolites presented a molecular weight of 296 (FAA = 280) indicating the presence of one oxygen but did not correspond to any monohydroxylated FAA derivative. These two metabolites were identified as epoxides because they were sensitive to epoxide hydrolase. The position of the oxygen was determined by the formation of the corresponding phenols under soft acidic conditions: one epoxide yielded the 3'- and 4'-hydroxy-FAA, thus corresponding to the 3',4'-epoxy-FAA, whereas the other epoxide yielded 5- and 6-hydroxy-FAA, thus identifying the 5,6-epoxy-FAA. The last metabolite was assigned to the 3',4'-dihydrodiol-FAA because of its molecular weight (314) and sulfuric acid dehydration that indicated that the 3'- and 4'-positions were involved. Compared with mouse microsomes, human microsomes (2 pools and 15 individual microsomes) were unable to metabolize FAA to a significant extent. In conclusion, we have identified six new FAA metabolites formed by mouse microsomes, whereas human microsomes could not metabolize this flavonoid to a significant extent. The biological importance of the new metabolites identified herein remains to be evaluated.


Subject(s)
Flavonoids/metabolism , Microsomes, Liver/metabolism , Microsomes/metabolism , Animals , Antineoplastic Agents/chemistry , Antineoplastic Agents/metabolism , Antineoplastic Agents/pharmacokinetics , Chromatography, High Pressure Liquid , Cytochrome P-450 Enzyme System/metabolism , Epoxide Hydrolases/chemistry , Epoxy Compounds/analysis , Epoxy Compounds/chemistry , Epoxy Compounds/metabolism , Female , Flavonoids/chemistry , Flavonoids/pharmacokinetics , Humans , Hydroxylation/drug effects , Mass Spectrometry , Mice , Mice, Inbred C57BL , Microsomes/drug effects , Microsomes/enzymology , Microsomes, Liver/drug effects , Microsomes, Liver/enzymology , Models, Chemical , Molecular Structure , Spectrophotometry, Ultraviolet
16.
Nucleic Acids Res ; 34(6): 1900-11, 2006.
Article in English | MEDLINE | ID: mdl-16598074

ABSTRACT

Human topoisomerase II (topo II) is the cellular target for a number of widely used antitumor agents, such as etoposide (VP16). These agents 'poison' the enzyme and induce it to generate DNA breaks that are lethal to the cell. Topo II-targeted drugs show a limited sequence preference, triggering double-stranded breaks throughout the genome. Circumstantial evidence strongly suggests that some of these breaks induce chromosomal translocations that lead to specific types of leukaemia (called treatment-related or secondary leukaemia). Therefore, efforts are ongoing to decrease these secondary effects. An interesting option is to increase the sequence-specificity of topo II-targeted drugs by attaching them to triplex-forming oligonucleotides (TFO) that bind to DNA in a highly sequence-specific manner. Here five derivatives of VP16 were attached to TFOs. The active topo II poisons, once linked, induced cleavage 13-14 bp from the triplex end where the drug was attached. The use of triple-helical DNA structures offers an efficient strategy for targeting topo II-mediated cleavage to DNA specific sequences. Finally, drug-TFO conjugates are useful tools to investigate the mechanistic details of topo II poisoning.


Subject(s)
Antineoplastic Agents, Phytogenic/chemistry , DNA/chemistry , Etoposide/analogs & derivatives , Topoisomerase II Inhibitors , Antineoplastic Agents, Phytogenic/toxicity , DNA Damage , DNA Footprinting , DNA Topoisomerases, Type II/metabolism , Drug Delivery Systems , Enzyme Inhibitors/chemistry , Enzyme Inhibitors/toxicity , Etoposide/toxicity , Humans , Oligodeoxyribonucleotides/chemistry
17.
Med Res Rev ; 26(1): 88-130, 2006 Jan.
Article in English | MEDLINE | ID: mdl-16216010

ABSTRACT

Aminopeptidase N (APN)/CD13 (EC 3.4.11.2) is a transmembrane protease present in a wide variety of human tissues and cell types (endothelial, epithelial, fibroblast, leukocyte). APN/CD13 expression is dysregulated in inflammatory diseases and in cancers (solid and hematologic tumors). APN/CD13 serves as a receptor for coronaviruses. Natural and synthetic inhibitors of APN activity have been characterized. These inhibitors have revealed that APN is able to modulate bioactive peptide responses (pain management, vasopressin release) and to influence immune functions and major biological events (cell proliferation, secretion, invasion, angiogenesis). Therefore, inhibition of APN/CD13 may lead to the development of anti-cancer and anti-inflammatory drugs. This review provides an update on the biological and pharmacological profiles of known natural and synthetic APN inhibitors. Current status on their potential use as therapeutic agents is discussed with regard to toxicity and specificity.


Subject(s)
CD13 Antigens/antagonists & inhibitors , Protease Inhibitors/chemistry , Protease Inhibitors/therapeutic use , Animals , Cell Proliferation/drug effects , Curcumin/pharmacology , Disulfides/pharmacology , Humans , Hydroxamic Acids/pharmacology , Leucine/analogs & derivatives , Leucine/pharmacology , Neovascularization, Physiologic/drug effects , Neprilysin/antagonists & inhibitors , Oligopeptides/pharmacology , Pentacyclic Triterpenes , Protease Inhibitors/pharmacology , Triterpenes/pharmacology , Tyrosine/analogs & derivatives , Tyrosine/pharmacology , Betulinic Acid
18.
Bioconjug Chem ; 16(4): 873-84, 2005.
Article in English | MEDLINE | ID: mdl-16029029

ABSTRACT

Triplex-forming oligonucleotides (TFOs) are among the most specific DNA ligands and represent an important tool for specific regulation of gene expression. TFOs have also been used to target DNA-modifying molecules to obtain irreversible modifications on a specific site of the genome. A number of molecules have been recognized to target topoisomerase II and stabilize double-stranded cleavage mediated by this enzyme thus determining permanent DNA damage. Among these poisons, etoposide (VP16), a 4'-demethylepipodophyllotoxin derivative, is widely used in cancer chemotherapy. In the aim to design DNA site-specific molecules, three analogues of VP16 (1, 2, and 3), recently described (Duca et al. J. Med. Chem. 2005, 48, 596-603), were attached to TFOs, together with a fourth one, of which the synthesis is reported here. Two different oligonucleotides, differing by the length (a 16-mer and a 20-mer), and two different linker arms between the oligonucleotide and the drug were used. The coupling reaction between the drug and the TFO was further improved. For the first time, we also report the synthesis of TFO conjugates bearing two molecules of inhibitor linked to the same oligonucleotide end. In total, 16 new conjugates were synthesized and evaluated for their ability to form triple helices. The loss in triplex stability due to the conjugation of the TFO to compounds that do not interact with DNA is compensated by the presence of the ethylene glycol linker arm. This stabilization effect is more pronounced at the 3' end than at the 5' end. All conjugates form a stable triplex selectively on the DNA target at 37 degrees C and pH 7.2.


Subject(s)
Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/pharmacology , Oligonucleotides/chemistry , Oligonucleotides/chemical synthesis , Topoisomerase II Inhibitors , DNA/metabolism , DNA Footprinting , Enzyme Inhibitors/metabolism , Hydrolysis , Magnetic Resonance Spectroscopy , Mass Spectrometry , Models, Molecular , Oligonucleotides/metabolism
19.
Proc Natl Acad Sci U S A ; 102(24): 8764-9, 2005 Jun 14.
Article in English | MEDLINE | ID: mdl-15939885

ABSTRACT

The prevalence of alternative splicing as a target for alterations leading to human genetic disorders makes it highly relevant for therapy. Here we have used in vitro splicing reactions with different splicing reporter constructs to screen 4,000 chemical compounds for their ability to selectively inhibit spliceosome assembly and splicing. We discovered indole derivatives as potent inhibitors of the splicing reaction. Importantly, compounds of this family specifically inhibit exonic splicing enhancer (ESE)-dependent splicing, because they interact directly and selectively with members of the serine-arginine-rich protein family. Treatment of cells expressing reporter constructs with ESE sequences demonstrated that selected indole derivatives mediate inhibition of ESE usage in vivo and prevent early splicing events required for HIV replication. This discovery opens the exciting possibility of a causal pharmacological treatment of aberrant splicing in human genetic disorders and development of new antiviral therapeutic approaches.


Subject(s)
Alternative Splicing/genetics , HIV-1/metabolism , Indoles/metabolism , Nuclear Proteins/metabolism , RNA Splicing/physiology , Ribonucleoproteins/metabolism , Spliceosomes/metabolism , Alternative Splicing/drug effects , DNA Primers , Genetic Vectors/genetics , HIV-1/drug effects , HeLa Cells , Humans , Indoles/pharmacology , RNA Splicing/drug effects , Serine-Arginine Splicing Factors , Spectrometry, Fluorescence , Spliceosomes/genetics
20.
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