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1.
Dig Dis Sci ; 51(10): 1712-5, 2006 Oct.
Article in English | MEDLINE | ID: mdl-16964546

ABSTRACT

Viral hepatitis A and B are known to cause acute liver failure. While nearly 20% of acute liver failure cases are of indeterminate etiology, screening for other viruses has not been uniformly performed. We looked for evidence for parvovirus B19 and hepatitis E virus in sera from U.S. acute liver failure patients. For B19, 78 patients' sera, including 34 with indeterminate etiology, were evaluated by DNA dot-blot hybridization, reverse transcription polymerase chain reaction, and enzyme-linked immunosorbent assay for immunoglobin G and M antibodies; none showed evidence for infection.


Subject(s)
Antibodies, Viral/blood , DNA, Viral/blood , Hepatitis E virus , Liver Failure, Acute/blood , Parvovirus B19, Human , RNA, Viral/blood , Case-Control Studies , Cohort Studies , Hepatitis E virus/genetics , Hepatitis E virus/immunology , Humans , Immunoglobulin G/blood , Immunoglobulin M/blood , Liver Failure, Acute/virology , Parvovirus B19, Human/genetics , Parvovirus B19, Human/immunology
2.
J Med Virol ; 78(11): 1436-40, 2006 Nov.
Article in English | MEDLINE | ID: mdl-16998880

ABSTRACT

Hepatitis C virus (HCV) exposure in blood donors is determined serologically by the detection of anti-HCV antibodies in serum or plasma. However, a "window" period of 30-70 days after exposure exists where specific antibodies to HCV antigens are not detected. The use of nucleic acid testing for the detection of HCV RNA or antigen testing for the detection of HCV core protein have resulted in dramatic reductions in the pre-seroconversion window period. In this study, an automated HCV core antigen detection test was developed. This magnetic microparticle-based assay utilizes anti-HCV core monoclonal antibody to capture antigen present in human serum or plasma. Captured antigen is then detected using an anti-HCV core monoclonal antibody conjugated with a chemiluminescent compound. The specificity of this assay was established at 99% upon testing a population of normal volunteer blood donors. Sensitivity was determined by testing 16 commercially available HCV seroconversion panels representing genotypes 1a, 1b, 2b, and 3a. In each panel tested, HCV core antigen was detected prior to anti-HCV antibody, resulting in a reduction of the window period by greater than 23 days on average, and greater than 34 days on panels initially NAT negative. In addition, HCV core antigen was detected in >97% of HCV RNA positive/antibody negative specimens, exhibiting sensitivity nearly equivalent to nucleic acid testing in the pre-seroconversion window period for the panels examined.


Subject(s)
Hepacivirus/isolation & purification , Hepatitis C Antigens/blood , Immunoassay/methods , Viral Core Proteins/blood , Blood Donors , Humans , Luminescence , Sensitivity and Specificity
3.
J Med Virol ; 57(4): 356-60, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10089046

ABSTRACT

Hepatitis E infection is typically associated with areas in which hepatitis E virus (HEV) is endemic. Except for a few cases in Europe and in the United States, acute hepatitis E is usually associated with travel to endemic areas. We set out to determine the etiologic role of HEV in acute non-A-C hepatitis in Italy. The presence of HEV-RNA and antibody was determined in 218 patients diagnosed with acute viral non-A-C hepatitis. Acute hepatitis E infection was defined by the presence of HEV-RNA in sera and positivity for IgM anti-HEV and seroconversion to IgG anti-HEV. Acute hepatitis E was found in 10.1% of the patients with acute non-A-C, with 95.5% exhibiting a benign course. A more severe course was observed in a patient co-infected with HAV and HEV. Most cases were travelers to endemic areas, although 18.2% reported no travel. One patient was from a household with an infected patient. Sequence analyses of the polymerase chain reaction (PCR) product derived from a patient who never visited endemic areas, identified an isolate that is divergent significantly from all reported isolates of HEV (79.5-85.8% nucleotide identity). Evidence from this study suggests that HEV accounts for approximately 10% of acute non-A-C viral hepatitis in Italy, diagnosed generally in travelers returning from endemic areas. However, the identification of a new HEV variant in an individual who never indicated travel or contact with individuals associated with endemic areas, suggests that this virus may be native to Italy.


Subject(s)
Genetic Variation , Hepatitis E virus/classification , Hepatitis E virus/genetics , Hepatitis E/virology , Adolescent , Adult , Aged , Child , Child, Preschool , Feces/virology , Female , Hepatitis Antibodies/blood , Hepatitis E virus/isolation & purification , Hepatitis, Viral, Human/virology , Humans , Infant , Italy , Male , Middle Aged , RNA, Viral/blood , Sequence Analysis, DNA
4.
J Gen Virol ; 80 ( Pt 3): 681-690, 1999 Mar.
Article in English | MEDLINE | ID: mdl-10092008

ABSTRACT

The partial sequence of a hepatitis E virus (HEV-US1) isolated from a patient in the United States (US), suffering from acute viral hepatitis with no known risk factors for acquiring HEV, has been reported. These sequences were significantly different from previously characterized HEV isolates, alluding to the existence of a distinct human variant. In this paper, we report the near full-length sequences of HEV-US1 and a second US isolate (HEV-US2). HEV-US2 was identified in a US patient suffering from acute viral hepatitis. These sequences verify the presence of a new HEV strain in North America and provide information as to the degree of variability between variants. The HEV-US nucleotide sequences are 92% identical to each other and only 74% identical to the Burmese and Mexican strains. Amino acid and phylogenetic analyses also demonstrate that the US isolates are genetically distinct, suggesting the presence of three genotypes of HEV. Serum from the second US patient induced hepatitis following inoculation into a cynomolgus macaque. Within 2-4 weeks, HEV-US2 RNA was detectable in both the serum and faecal material coinciding with elevated serum alanine transaminase levels. Infection resolved as antibody titres increased 8 weeks post-inoculation.


Subject(s)
Genetic Variation , Hepatitis E virus/genetics , Hepatitis E/virology , Macaca fascicularis/virology , Acute Disease , Alanine Transaminase/blood , Animals , Base Sequence , Feces/virology , Genome, Viral , Genotype , Hepatitis Antibodies/blood , Hepatitis E/blood , Hepatitis E/immunology , Hepatitis E virus/classification , Hepatitis E virus/growth & development , Hepatitis E virus/immunology , Humans , Macaca fascicularis/blood , Macaca fascicularis/immunology , Male , Middle Aged , Molecular Sequence Data , Phylogeny , RNA, Viral/blood , Sequence Analysis, DNA , Sequence Homology, Nucleic Acid , United States , Viral Proteins/chemistry , Viral Proteins/genetics
5.
J Viral Hepat ; 5(3): 161-4, 1998 May.
Article in English | MEDLINE | ID: mdl-9658368

ABSTRACT

We investigated the possible role of hepatitis G virus (HGV or GBV-C) in the aetiology of acute non-A-E hepatitis in Argentina by detecting viral RNA in sera by reverse transcriptase-polymerase chain reaction (RT-PCR) using primers specific for the putative NS3 helicase region of HGV. Sixty two patients with acute hepatitis were included in this study. The absence of hepatitis A-E was confirmed by serological testing, and all patients were negative for HCV RNA and autoimmune markers. All patients denied alcohol intake and the use of hepatotoxic drugs. Their mean age was 35.3 years and 37 were males. HGV RNA was present in 19/62 (30.6%) of the patients with non-A-E acute hepatitis. Among HGV-positive patients, three had parenteral risk factors within 3 months of onset, one was a health care worker, one was sexually promiscuous, one had travelled to the Middle East and 13 (68.4%) had no history of parenteral exposure. Epidemiological, clinical and biochemical features between HGV-positive and negative patients did not achieve statistical significance. Hence, HGV appears to play a role in the pathogenesis of acute viral hepatitis; however, the etiology of a significant number of hepatitis cases remains unclear, suggesting the existence of an additional agent(s). The absence of parenteral exposure in most of the HGV RNA-positive patients in this study shows that routes of community-acquired HGV infection are not yet completely understood.


Subject(s)
Flaviviridae/isolation & purification , Hepatitis, Viral, Human/virology , RNA, Viral/blood , Acute Disease , Adult , Alanine Transaminase/blood , Female , Flaviviridae/genetics , Hepatitis, Viral, Human/blood , Humans , Male , Viremia , Virus Latency
6.
J Virol Methods ; 71(2): 147-57, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9626948

ABSTRACT

Viral characterization studies were carried out on GB virus C (GBV-C) RNA positive plasma from normal human donors and from donors co-infected with GBV-C and hepatitis C virus (HCV). GBV-C RNA was detected by reverse-transcriptase polymerase chain reaction (RT-PCR) and probe hybridization in a single tube assay. Sequential filtration of GBV-C positive plasma indicated that GBV-C RNA is associated with a particle 50-100 nm in diameter. The peak of GBV-C RNA in sucrose gradients was observed at a buoyant density of 1.05-1.13 g/ml. GBV-C RNA titer was reduced following treatment with chloroform or with five detergents indicating that GBV-C has a lipid-containing envelope. Sucrose density gradients and self-forming cesium chloride gradients of detergent-treated GBV-C showed a shift in the RNA peak to heavier buoyant density only when RNase inhibitor (RNasin) and high detergent concentrations were present. The treated material was non-filterable and the RNA had a density of > 1.5 gm/ml.


Subject(s)
Flaviviridae/chemistry , Flaviviridae/isolation & purification , RNA, Viral/blood , Centrifugation, Density Gradient , Centrifugation, Isopycnic , Detergents/pharmacology , Filtration , Flaviviridae/genetics , Hepacivirus/chemistry , Hepacivirus/genetics , Hepacivirus/isolation & purification , Hepatitis C/complications , Hepatitis C/virology , Hepatitis, Viral, Human/complications , Hepatitis, Viral, Human/virology , Humans , Polymerase Chain Reaction/methods , RNA, Viral/chemistry , Ribonucleases/antagonists & inhibitors , Viremia/virology
7.
J Gen Virol ; 79 ( Pt 3): 447-56, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9519822

ABSTRACT

A variant of hepatitis E virus (HEV), designated HEV US-1, was identified in a hepatitis patient in the United States (US); the patient had no history of travel to areas where HEV is endemic. Nucleotide sequences were obtained from the 5' end of open reading frame (ORF) 1 (1418 nt), the 3' end of ORF1 (1359 nt), the entire ORF2 and ORF3 regions, and the 3'-untranslated region (2127 nt). The HEV US-1 strain is significantly divergent from other human HEV isolates with nucleotide identities ranging from 76.8 to 77.5%. Phylogenetic analyses indicate that HEV US-1 and a recently discovered HEV variant from swine may represent separate isolates of a new strain of HEV, significantly divergent from the Mexican and Burmese strains. Synthetic peptides derived from the carboxyl amino acids of ORF2 and ORF3 were shown to be useful for detecting exposure to HEV. In addition, IgM class antibodies directed against HEV US-1 synthetic peptides were detected in the US patient infected with HEV US-1, but were absent using synthetic peptides from the Burmese or Mexican strains of HEV. A preferential reactivity to HEV US-1 specific peptides has lead to the identification of a second isolate of this virus also from a patient with acute hepatitis from the US. The discovery of these HEV variants may be important in understanding the worldwide distribution of HEV infection.


Subject(s)
Hepatitis E virus/genetics , Phylogeny , RNA, Viral/analysis , Acute Disease , Amino Acid Sequence , Animals , Antibodies, Viral/blood , Base Sequence , China , Cloning, Molecular , Genetic Variation , Hepatitis E/immunology , Humans , Male , Middle Aged , Molecular Sequence Data , Polymerase Chain Reaction , Sequence Homology , Swine , Transcription, Genetic , United States
8.
Mayo Clin Proc ; 72(12): 1133-6, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9413292

ABSTRACT

OBJECTIVE: To report the first case of acute hepatitis E by a novel isolate acquired in the United States and confirmed by nucleotide sequencing. MATERIAL AND METHODS: We describe the clinical manifestations and the results of associated laboratory studies in a man who was found to have acute hepatitis E infection. RESULTS: A 62-year-old man was hospitalized because of fever, abdominal pain, and jaundice. After an initial evaluation did not provide a cause, his serum was found to be positive for IgG anti-hepatitis E virus (HEV) by three antibody assays. Serum was also positive for HEV RNA by reverse transcriptase polymerase chain reaction (PCR). Sequencing results from the PCR products demonstrated substantial differences at the nucleotide level between this strain and the known Mexican and Burmese strains. CONCLUSION: On the basis of this initial report, HEV should be considered an etiologic agent in patients with acute non-ABC hepatitis in the United States.


Subject(s)
Hepatitis Antibodies/blood , Hepatitis E virus/immunology , Hepatitis E/diagnosis , Acute Disease , Diagnosis, Differential , Hepatitis E/blood , Hepatitis E/immunology , Hepatitis E/pathology , Hepatitis E virus/genetics , Humans , Immunoglobulin G/blood , Male , Middle Aged , Polymerase Chain Reaction/methods , RNA, Viral/analysis , RNA-Directed DNA Polymerase
9.
J Med Virol ; 53(2): 167-73, 1997 Oct.
Article in English | MEDLINE | ID: mdl-9334929

ABSTRACT

Exposure to GB virus C (GBV-C) was determined in several U.S. populations by both reverse-transcription-polymerase chain reaction (RT-PCR) and by an enzyme linked immunosorbent assay (ELISA) for antibodies to mammalian cell-expressed GBV-C envelope protein, E2 (GBV-C E2). Most individuals exposed to GBV-C were either RNA positive/ELISA negative or ELISA positive/RNA negative. Exposure, therefore, was measured as the sum of GBV-C RNA positive and GBV-C E2 antibody positive specimens, and was higher in commercial plasmapheresis donors (40.5%) than in volunteer blood donors (5.5%). In intravenous drug users (IVDUs), GBV-C exposure was 89.2%. Serial bleed specimens tested for GBV-C RNA indicate that some patients remain viremic for at least 3 years and fail to produce detectable antibodies to GBV-C E2. In other exposed individuals who tested negative for GBV-C RNA, antibodies to E2 appear to be similarly long-lived (greater than 3 years) with a fairly constant titer (ranging in reciprocal endpoint dilution from 336 to 21,504). Since the detection of GBV-C RNA and GBV-C E2 antibody are mutually exclusive in most exposed individuals, studies pertaining to incidence and prevalence of GBV-C infection require both antibody and nucleic acid detection.


Subject(s)
Flaviviridae/immunology , Flaviviridae/isolation & purification , Hepatitis Antibodies/blood , Hepatitis, Viral, Human/virology , RNA, Viral/blood , Acute Disease , Blood Donors , Blood Transfusion , Hepatitis C/virology , Hepatitis C, Chronic/virology , Humans , Plasma , Substance Abuse, Intravenous/virology
10.
J Gen Virol ; 78 ( Pt 8): 1851-9, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9266979

ABSTRACT

A 315 amino acid recombinant segment of the GB virus C (GBV-C) E2 envelope glycoprotein (E2-315) was expressed and secreted from CHO cells. E2-315 was purified by affinity chromatography using a monoclonal antibody directed to a FLAG sequence genetically engineered onto the C terminus of the recombinant protein. The secreted protein had a molecular mass of 48-56 kDa and was shown to be N-glycosylated. Amino acid sequencing confirmed the expected N-terminal sequence. Purified E2-315 was used to develop an ELISA for detection of E2 antibodies in human sera. Antibodies to GBV-C E2 appeared to be directed toward conformational epitopes since human sera reactivity was detected in ELISA using native E2-315, but it was extremely weak or non-existent with denatured E2 protein. The use of an ELISA which can detect human GBV-C E2 antibodies will be important in further understanding of the clinical significance and epidemiology of GBV-C.


Subject(s)
Flaviviridae/metabolism , Hepatitis Antibodies/blood , Viral Envelope Proteins/biosynthesis , Amino Acid Sequence , Animals , CHO Cells , Chromatography, Affinity , Cricetinae , Enzyme-Linked Immunosorbent Assay , Flaviviridae/genetics , Glycosylation , Hepatitis, Viral, Human/diagnosis , Hepatitis, Viral, Human/epidemiology , Hepatitis, Viral, Human/immunology , Humans , Molecular Sequence Data , Molecular Weight , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Transfection , Viral Envelope Proteins/chemistry , Viral Envelope Proteins/isolation & purification
11.
J Infect Dis ; 175(2): 458-61, 1997 Feb.
Article in English | MEDLINE | ID: mdl-9203673

ABSTRACT

An ELISA was developed for detection of antibodies to GB virus C (GBV-C) using a recombinant E2 protein expressed in CHO cells. Seroconversion to anti-E2 positivity was noted among several persons infected with GBV-C RNA-positive blood through transfusion. Of 6 blood recipients infected by GBV-C RNA-positive donors, 4 (67%) became anti-E2 positive and cleared their viremia. Thus, anti-E2 seroconversion is associated with viral clearance. The prevalence of antibodies to E2 was relatively low (3.0%-8.1%) in volunteer blood donors but was higher in several other groups, including plasmapheresis donors (34.0%), intravenous drug users (85.2%), and West African subjects (13.3%), all of whom tested negative by GBV-C reverse-transcription polymerase chain reaction (RT-PCR). These data demonstrate that testing for anti-E2 should greatly extend the ability of RT-PCR to define the epidemiology and clinical significance of GBV-C.


Subject(s)
Antibodies, Viral/analysis , Enzyme-Linked Immunosorbent Assay/methods , Flaviviridae/immunology , Hepatitis, Viral, Human/epidemiology , Hepatitis, Viral, Human/immunology , Viral Envelope Proteins/immunology , Africa/epidemiology , Animals , Blood Donors , CHO Cells , Cricetinae , Flaviviridae/genetics , Humans , Plasmapheresis/adverse effects , Polymerase Chain Reaction , Prevalence , RNA, Viral/analysis , Recombinant Proteins/immunology , Substance Abuse, Intravenous/virology , Transfusion Reaction
12.
J Virol Methods ; 69(1-2): 1-6, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9504745

ABSTRACT

An enzyme linked immunosorbent assay (ELISA) for detection of antibodies to mammalian cell-expressed E2 protein of GB virus C (GBV-C E2) is described. Antibodies to GBV-C E2 are captured on a solid phase coated with affinity purified E2 protein. Bound antibody is detected in an indirect assay format using horseradish peroxidase (HRPO) labeled goat anti-human IgG as the secondary antibody. Following a color development step, absorbance at 492 nm is measured. A population of 100 volunteer blood donors was tested to assess the specificity of this assay. Individuals reactive for antibody to GBV-C E2 can be considered to have been exposed to GB virus C.


Subject(s)
Enzyme-Linked Immunosorbent Assay , Flaviviridae/immunology , Hepatitis Antibodies/blood , Viral Envelope Proteins/immunology , Blood Donors , Horseradish Peroxidase , Humans , Reproducibility of Results , Sensitivity and Specificity , Spectrophotometry
13.
J Virol ; 70(12): 9028-30, 1996 Dec.
Article in English | MEDLINE | ID: mdl-8971037

ABSTRACT

Sequences from the putative 5' nontranslated region of GB virus A were isolated from mystax, owl monkeys, and tamarins. Though sequences of isolates from each animal species are virtually identical at the nucleotide level (95%), isolates from different species are dramatically different (52 to 79% identical) and genetically cluster on this basis.


Subject(s)
DNA, Viral/analysis , Flaviviridae/genetics , Genetic Variation , Hepatitis, Viral, Animal/virology , Animals , Aotidae/virology , Base Sequence , Flaviviridae/classification , Flaviviridae/isolation & purification , Molecular Sequence Data , Phylogeny , Saguinus/virology , Species Specificity
14.
Virology ; 225(2): 282-92, 1996 Nov 15.
Article in English | MEDLINE | ID: mdl-8918914

ABSTRACT

A 336-amino-acid segment of the GB virus C second envelope protein (E2) has been produced in BHK-21 cells using the Semliki Forest virus vector system. Secretion of this protein was facilitated by deletion of a hydrophobic region at the C-terminus that may represent the membrane anchoring domain. The E2 protein recovered from the culture supernatant exhibited a molecular mass of approximately 52 kDa, with the increase in size relative to the polyprotein backbone being contributed by N-linked glycosylation. A radioimmunoprecipitation assay using GBV-C E2 was developed to test for the presence of antibodies against this protein in human sera. The prevalence of antibodies to E2 was high among injection drug users and other individuals at risk for acquiring parenterally transmitted agents. There was a much higher percentage of anti-E2 seropositivity in GBV-C RT-PCR negative compared to GBV-C RT-PCR positive samples from these populations. In addition, serial samples from patients transfused with blood containing GBV-C showed seroconversion to anti-E2 positivity and loss of GBV-C viremia as measured by RT-PCR within 11 months of transfusion in five of seven individuals. Thus, this system provided a rapid means to identify GBV-C E2 as a useful antigen for the study of GBV-C exposure.


Subject(s)
Flaviviridae/genetics , Genetic Vectors , Semliki forest virus/genetics , Serologic Tests , Viral Envelope Proteins/genetics , Base Sequence , Biomarkers , Flaviviridae/metabolism , Gene Expression Regulation, Viral , Humans , Molecular Sequence Data , Plasmids/genetics , Viral Envelope Proteins/blood , Viral Envelope Proteins/isolation & purification
15.
South Med J ; 89(10): 994-6, 1996 Oct.
Article in English | MEDLINE | ID: mdl-8865794

ABSTRACT

A patient who had recently traveled from India to Tennessee was found to have acute hepatitis E. Improved recognition and serologic testing have increased the diagnosis of hepatitis E in the United States. For those at risk, hepatitis E should be considered in the differential diagnosis of acute hepatitis.


Subject(s)
Emigration and Immigration , Hepatitis E/diagnosis , Adult , Endemic Diseases , Follow-Up Studies , Hepatitis Antibodies/blood , Hepatitis E virus/immunology , Humans , Immunoglobulin G/blood , Immunoglobulin M/blood , India/ethnology , Male , United States
16.
J Med Virol ; 50(1): 97-103, 1996 Sep.
Article in English | MEDLINE | ID: mdl-8890047

ABSTRACT

Among the three recently described GB viruses (GBV-A, GBV-B, and GBV-C), only GBV-C has been linked to cryptogenic hepatitis in man. Because of the limited utility of currently available research tests to determine antibody response to GBV-C proteins, the prevalence of GBV-C RNA in human sera was studied using reverse transcription-polymerase chain reaction (RT-PCR). The prevalence of GBV-C is higher among volunteer blood donors with elevated serum alanine aminotransferase (ALT) levels (3.9%) than among volunteer blood donors with normal ALT levels (0.8%). Higher rates were also noted among commercial blood donors (12.9%) and intravenous drug users (16.0%). GBV-C was frequently detected in residents of West Africa, where the prevalence was > 10% in most age groups. Approximately 20% of patients diagnosed with either acute or chronic hepatitis C virus (HCV) were found to be positive for GBV-C RNA. In addition, GBV-C RNA sequences were detected in individuals diagnosed with non-A-E hepatitis, with clinical courses ranging from mild disease to fulminant hepatitis. Fourteen of sixteen subjects with or without clinically apparent hepatitis were positive for GBV-C RNA more than 1 year after the initial positive result.


Subject(s)
Flaviviridae/isolation & purification , Hepatitis, Viral, Human/virology , Polymerase Chain Reaction/methods , RNA, Viral/blood , Flaviviridae/genetics , Flaviviridae/physiology , Hepatitis, Viral, Human/blood , Hepatitis, Viral, Human/epidemiology , Humans , Viremia , Virus Latency
17.
J Hepatol ; 25(3): 379-84, 1996 Sep.
Article in English | MEDLINE | ID: mdl-8895018

ABSTRACT

BACKGROUND: GB virus C is a positive-strand RNA virus that is associated with hepatitis in humans. GB virus C bears some resemblance to hepatitis C virus in its genomic sequence and organization. However, unlike hepatitis C virus, an open reading frame possessing a complete core protein was not identified in the original isolate. METHODS: To verify the sequence at the 5'-end of the GB virus C genome, we amplified approximately 600 nucleotides from this region from 35 globally distributed individuals. The nucleotide sequences were translated in all possible reading frames and then examined for conserved motifs indicative of nucleocapsid or core-like peptides. RESULTS: Forty-two unique GB virus C sequences were obtained from the 35 individuals. The deduced amino acid sequences upstream of the putative E1 gene from each isolate varied in length and composition, such that a conserved core-like sequence was not apparent. No core-like sequences were evident in the other reading frames. There was, however, a single methionine codon held in common among all isolates, although it was located very near the presumed amino-terminus of the putative E1 protein. Further analysis of the sequences for their evolutionary relatedness demonstrated the existence of five GB virus C subtypes that demonstrated a significant correlation with geographic distribution. CONCLUSIONS: GB virus C differs from hepatitis C virus and GB virus B in that it does not encode a nucleocapsid or core protein. The existence of GB virus C subtypes emphasizes the importance of investigating the correlation between infecting subtype and the severity of liver disease and/or responsiveness to treatment of GB virus C-associated hepatitis.


Subject(s)
Flaviviridae/genetics , Genome, Viral , Population , Base Sequence , Genotype , Humans , Molecular Sequence Data , Nucleocapsid/genetics , Phylogeny
18.
Eur J Gastroenterol Hepatol ; 8(4): 312-8, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8781896

ABSTRACT

The hepatitis E virus (HEV) is a cause of severe liver disease in humans, especially in developing countries. Several assays are available to detect the HEV genome and specific antibodies against HEV (anti-IgG, IgA and IgM). Different serological patterns enable the diagnostician to differentiate remote from recent infections. In order to avoid diagnostic errors based on incomplete serological diagnosis, these patterns are shown with their specific serological marker.


Subject(s)
Hepatitis E virus/genetics , Hepatitis E/diagnosis , Animals , Hepatitis Antibodies/blood , Hepatitis E/epidemiology , Hepatitis E virus/immunology , Humans , Seroepidemiologic Studies
19.
J Med Virol ; 48(4): 329-38, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8699165

ABSTRACT

The genomes of two novel members of the Flaviviridae associated with GB agent hepatitis (GB viruses A and B) were cloned and sequenced recently. The genome of a third novel virus (GB virus C), related to but distinct from GB viruses A and B, has also been identified and characterized. Overlapping clones encompassing the large open reading frames of these three viruses have been expressed in E. coli as CTP:CMP-3-deoxy-D-manno-octulosonate cytidylyltransferase (CKS) fusion proteins. Bacterial lysates were subjected to Western blot analyses using sera from GB agent-infected tamarins and human sera from various individuals with or "at risk" for non-A, non-B, non-C, non-D, non-E hepatitis. Antigenic regions were identified in the putative NS3, NS4, and NS5 proteins from all three viruses. An antigenic region was also identified in the putative core protein of GB virus B. Many of the clones identified originally as encoding antigenic proteins were quite large. To map these regions more narrowly, smaller overlapping clones were generated by polymerase chain reaction (PCR), expressed as recombinant CKS fusion proteins and tested by Western blot. Additionally, a lambda gt11 expression library was generated from infectious tamarin sera and immunoscreened. These studies have identified at least three epitopes in GB virus A, five epitopes in GB virus B and four epitopes in GB virus C.


Subject(s)
Antigens, Viral/analysis , Epitopes/analysis , Flaviviridae/genetics , Genome, Viral , Hepatitis Viruses/genetics , Hepatitis, Viral, Animal/virology , Hepatitis, Viral, Human/virology , Animals , Base Sequence , DNA, Viral/analysis , Flaviviridae/immunology , Hepatitis Viruses/immunology , Hepatitis, Viral, Animal/immunology , Hepatitis, Viral, Human/immunology , Humans , Molecular Sequence Data , Saguinus
20.
J Med Virol ; 48(1): 60-7, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8825712

ABSTRACT

Recently, sequences from a novel virus, termed GB virus C (GBV-C), were identified in serum from several patients with cryptogenic hepatitis. In the present study, the nucleotide sequence of this virus has been extended to near-genome length. GBV-C encodes a putative single large polyprotein in which the structural proteins are positioned at the N-terminal end, with the non-structural proteins located at the C-terminal end. Amino acid sequence analysis of this large polyprotein reveals the presence of protease, helicase, and replicase motifs. Sequence alignments of the polyprotein followed by phylogenetic analyses suggest that GBV-C is a member of the Flaviviridae, most closely related to the recently described GB virus A.


Subject(s)
Genome, Viral , Hepatitis Viruses/genetics , Hepatitis, Viral, Human/virology , Amino Acid Sequence , Endopeptidases/metabolism , Flaviviridae/chemistry , Flaviviridae/classification , Flaviviridae/genetics , Hepatitis Viruses/chemistry , Hepatitis Viruses/classification , Humans , Molecular Sequence Data , Phylogeny , Proteins/metabolism , Sequence Homology, Amino Acid , Viral Proteins/metabolism
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