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1.
J Mol Biol ; 427(19): 3096-109, 2015 Sep 25.
Article in English | MEDLINE | ID: mdl-26259880

ABSTRACT

The type III secretion system (T3SS) is essential in the pathogenesis of Yersinia pestis, the causative agent of plague. A small protein, LcrG, functions as a chaperone to the tip protein LcrV, and the LcrG-LcrV interaction is important in regulating protein secretion through the T3SS. The atomic structure of the LcrG family is currently unknown. However, because of its predicted helical propensity, many have suggested that the LcrG family forms a coiled-coil structure. Here, we show by NMR and CD spectroscopy that LcrG lacks a tertiary structure and it consists of three partially folded α-helices spanning residues 7-38, 41-46, and 58-73. NMR titrations of LcrG with LcrV show that the entire length of a truncated LcrG (residues 7-73) is involved in binding to LcrV. However, there is regional variation in how LcrG binds to LcrV. The C-terminal region of a truncated LcrG (residues 52-73) shows tight binding interaction with LcrV while the N-terminal region (residues 7-51) shows weaker interaction with LcrV. This suggests that there are at least two binding events when LcrG binds to LcrV. Biological assays and mutagenesis indicate that the C-terminal region of LcrG (residues 52-73) is important in blocking protein secretion through the T3SS. Our results reveal structural and mechanistic insights into the atomic conformation of LcrG and how it binds to LcrV.


Subject(s)
Antigens, Bacterial/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Plague/microbiology , Pore Forming Cytotoxic Proteins/chemistry , Pore Forming Cytotoxic Proteins/metabolism , Type III Secretion Systems/metabolism , Yersinia pestis/metabolism , Amino Acid Sequence , Animals , Antigens, Bacterial/chemistry , Humans , Molecular Chaperones/chemistry , Molecular Chaperones/metabolism , Molecular Dynamics Simulation , Molecular Sequence Data , Protein Binding , Protein Folding , Protein Structure, Secondary , Sequence Alignment , Type III Secretion Systems/chemistry , Yersinia pestis/chemistry
2.
Plant Cell ; 21(2): 507-25, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19218397

ABSTRACT

Acyl-CoA Synthetase (ACOS) genes are related to 4-coumarate:CoA ligase (4CL) but have distinct functions. The Arabidopsis thaliana ACOS5 protein is in clade A of Arabidopsis ACOS proteins, the clade most closely related to 4CL proteins. This clade contains putative nonperoxisomal ACOS enzymes conserved in several angiosperm lineages and in the moss Physcomitrella patens. Although its function is unknown, ACOS5 is preferentially expressed in the flowers of all angiosperms examined. Here, we show that an acos5 mutant produced no pollen in mature anthers and no seeds by self-fertilization and was severely compromised in pollen wall formation apparently lacking sporopollenin or exine. The phenotype was first evident at stage 8 of anther development and correlated with maximum ACOS5 mRNA accumulation in tapetal cells at stages 7 to 8. Green fluorescent protein-ACOS5 fusions showed that ACOS5 is located in the cytoplasm. Recombinant ACOS5 enzyme was active against oleic acid, allowing kinetic constants for ACOS5 substrates to be established. Substrate competition assays indicated broad in vitro preference of the enzyme for medium-chain fatty acids. We propose that ACOS5 encodes an enzyme that participates in a conserved and ancient biochemical pathway required for sporopollenin monomer biosynthesis that may also include the Arabidopsis CYP703A2 and MS2 enzymes.


Subject(s)
Arabidopsis Proteins/physiology , Arabidopsis/metabolism , Biopolymers/biosynthesis , Carotenoids/biosynthesis , Coenzyme A Ligases/genetics , Pollen/growth & development , Alleles , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis Proteins/analysis , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Binding, Competitive , Biopolymers/chemistry , Carotenoids/chemistry , Coenzyme A Ligases/chemistry , Coenzyme A Ligases/physiology , Cytoplasm/metabolism , Flowers/genetics , Flowers/growth & development , Flowers/metabolism , Green Fluorescent Proteins/analysis , Kinetics , Mutation , Phylogeny , Pollen/metabolism , Recombinant Fusion Proteins/analysis , Substrate Specificity
3.
New Phytol ; 179(4): 987-1003, 2008.
Article in English | MEDLINE | ID: mdl-18627494

ABSTRACT

The plant enzyme 4-coumarate:coenzyme A ligase (4CL) is part of a family of adenylate-forming enzymes present in all organisms. Analysis of genome sequences shows the presence of '4CL-like' enzymes in plants and other organisms, but their evolutionary relationships and functions remain largely unknown. 4CL and 4CL-like genes were identified by BLAST searches in Arabidopsis, Populus, rice, Physcomitrella, Chlamydomonas and microbial genomes. Evolutionary relationships were inferred by phylogenetic analysis of aligned amino acid sequences. Expression patterns of a conserved set of Arabidopsis and poplar 4CL-like acyl-CoA synthetase (ACS) genes were assayed. The conserved ACS genes form a land plant-specific class. Angiosperm ACS genes grouped into five clades, each of which contained representatives in three fully sequenced genomes. Expression analysis revealed conserved developmental and stress-induced expression patterns of Arabidopsis and poplar genes in some clades. Evolution of plant ACS enzymes occurred early in land plants. Differential gene expansion of angiosperm ACS clades has occurred in some lineages. Evolutionary and gene expression data, combined with in vitro and limited in vivo protein function data, suggest that angiosperm ACS enzymes play conserved roles in octadecanoid and fatty acid metabolism, and play roles in organ development, for example in anthers.


Subject(s)
Coenzyme A Ligases/genetics , Genome, Plant , Plant Proteins/genetics , Plants/genetics , Arabidopsis/enzymology , Arabidopsis/genetics , Base Sequence , Bryopsida/enzymology , Bryopsida/genetics , Chloroplasts/chemistry , Coenzyme A Ligases/analysis , Coenzyme A Ligases/physiology , Computational Biology , Evolution, Molecular , Gene Expression , Multigene Family , Oryza/enzymology , Oryza/genetics , Peroxisomes/chemistry , Phylogeny , Plant Proteins/analysis , Plant Proteins/physiology , Plants/enzymology , Plants, Genetically Modified/metabolism , Plants, Genetically Modified/ultrastructure , Populus/enzymology , Populus/genetics , Sequence Alignment , Nicotiana/genetics
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