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1.
Proc Natl Acad Sci U S A ; 88(20): 9180-3, 1991 Oct 15.
Article in English | MEDLINE | ID: mdl-1924381

ABSTRACT

Aspartate transcarbamoylase (EC 2.1.3.2) is extensively studied as a model for cooperativity and allostery. This enzyme shows cooperativity between the catalytic sites, and its activity is feedback inhibited by CTP and activated by ATP. These regulatory processes involve several interfaces between catalytic and regulatory chains as well as between domains within these two types of chains. As far as the regulatory chain is concerned, its two domains are in contact through a hydrophobic interface, in which a tyrosine residue is inserted in a pocket involving two leucine residues of the allosteric domain and a valine and a leucine residue of the zinc domain. To probe the possible implication of this hydrophobic core in the CTP and ATP regulatory effect, the tyrosine was replaced by a phenylalanine through oligonucleotide-directed mutagenesis. Interestingly, the resulting mutant shows a complete inversion of the ATP effect; it is now inhibited by ATP instead of being activated by this nucleotide triphosphate. This mutant remains normally sensitive to the feedback inhibitor CTP. This result shows that the hydrophobic interface between the two domains of the regulatory chain plays an important role in the discrimination between the regulatory signals promoted by the two allosteric effectors.


Subject(s)
Adenosine Triphosphate/metabolism , Aspartate Carbamoyltransferase/metabolism , Escherichia coli/enzymology , Mutagenesis, Site-Directed , Phenylalanine , Tyrosine , Adenosine Triphosphate/pharmacology , Allosteric Regulation , Amino Acid Sequence , Aspartate Carbamoyltransferase/chemistry , Aspartate Carbamoyltransferase/genetics , Enzyme Activation , Escherichia coli/genetics , Kinetics , Macromolecular Substances , Models, Molecular , Protein Conformation , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism
2.
J Mol Biol ; 220(3): 789-99, 1991 Aug 05.
Article in English | MEDLINE | ID: mdl-1870132

ABSTRACT

In Escherichia coli aspartate transcarbamylase, each regulatory chain is involved in two kinds of interfaces with the catalytic chains, one with the neighbour catalytic chain which belongs to the same half of the molecule (R1-C1 type of interaction), the other one with a catalytic chain belonging to the other half of the molecule (R1-C4 type of interaction). In the present work, site-directed mutagenesis was used to investigate the involvement of the C-terminal region of the regulatory chain in the process of feed-back inhibition by CTP. Removal of the two last C-terminal residues of the regulatory chains is sufficient to abolish entirely the sensitivity of the enzyme to CTP. Thus, it appears that the contact between this region and the 240s loop of the catalytic chain (R1-C4 type of interaction) is essential for the transmission of the regulatory signal which results from CTP binding to the regulatory site. None of the modifications made in the R1-C4 interface altered the sensitivity of the enzyme to the activator ATP, suggesting that the effect of this nucleotide rather involves the R1-C1 type of interface. These results are in agreement with the previously proposed interpretation that CTP and ATP do not simply act in inverse ways on the same equilibrium.


Subject(s)
Adenosine Triphosphate/pharmacology , Aspartate Carbamoyltransferase/metabolism , Cytidine Triphosphate/pharmacology , Escherichia coli/enzymology , Amino Acid Sequence , Aspartate Carbamoyltransferase/antagonists & inhibitors , Aspartate Carbamoyltransferase/chemistry , Aspartate Carbamoyltransferase/genetics , Binding Sites , Chromosome Deletion , Enzyme Activation , Escherichia coli/genetics , Kinetics , Macromolecular Substances , Models, Molecular , Molecular Sequence Data , Mutagenesis, Site-Directed , Oligonucleotide Probes , Protein Conformation , Recombinant Proteins/antagonists & inhibitors , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Restriction Mapping , X-Ray Diffraction
3.
J Mol Biol ; 216(2): 375-84, 1990 Nov 20.
Article in English | MEDLINE | ID: mdl-2254935

ABSTRACT

In aspartate transcarbamylase (ATCase) each regulatory chain interacts with two catalytic chains each one belonging to a different trimeric catalytic subunit (R1-C1 and R1-C4 types of interactions as defined in Fig. 1). In order to investigate the interchain contacts that are involved in the co-operative interactions between the catalytic sites, a series of modified forms of the enzyme was prepared by site-directed mutagenesis. The amino acid replacements were devised on the basis of the previously described properties of an altered form of ATCase (pAR5-ATCase) which lacks the homotropic co-operative interactions between the catalytic sites. The results obtained (enzyme kinetics, bisubstrate analog influence and pH studies) show that the R1-C4 interaction is essential for the establishment of the enzyme conformation that has a low affinity for aspartate (T state), and consequently for the existence of co-operativity between the catalytic sites. This interaction involves the 236-250 region of the aspartate binding domain of the catalytic chain (240s loop) and the 143-149 region of the regulatory chain which comprises helix H3'.


Subject(s)
Aspartate Carbamoyltransferase/metabolism , Escherichia coli/enzymology , Allosteric Site , Amino Acid Sequence , Aspartate Carbamoyltransferase/genetics , Aspartic Acid/analogs & derivatives , Aspartic Acid/pharmacology , Binding Sites , Escherichia coli/genetics , Hydrogen-Ion Concentration , Kinetics , Macromolecular Substances , Models, Molecular , Models, Structural , Molecular Sequence Data , Mutagenesis, Insertional , Phosphonoacetic Acid/analogs & derivatives , Phosphonoacetic Acid/pharmacology , Plasmids , Protein Binding , Protein Conformation , Restriction Mapping
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