Early adipose deposits in sheep: comparative analysis of the perirenal fat transcriptome of Assaf and Churra suckling lambs.

Adipose deposits influence the quality of ruminant carcasses, and in suckling lambs, internal types of adipose deposits represent a notable proportion of total fat. The aim of this study was to perform a comparative analysis of the perirenal fat transcriptomes of suckling lambs from two breeds with different growth and carcass characteristics. The perirenal fat tissue from 14 suckling lambs (Assaf, n = 8; Churra, n = 6) was used for the RNA-seq analysis. The functional enrichment analysis of the 670 highly expressed genes (>150 fragments per kilobase of exon per million fragments mapped) in the perirenal fat transcriptome of both breeds revealed that the majority of these genes were involved in energy processes. The expression of the UCP1 gene, a classical biomarker of brown fat, and the presence of multilocular adipocytes in the two breeds supported the presence of brown fat at the transition stage towards white fat tissue. The differential expression analysis performed identified 373 differentially expressed genes (DEGs) between the two compared breeds. Brown/white fat gene biomarkers were not included in the list of DEGs. In Assaf lambs, DEGs were enriched in Gene Ontology (GO) biological processes related to fatty-acid oxidation, whereas in Churra lambs, the majority of the significantly enriched GO terms were related to cholesterol synthesis, which suggests that upregulated DEGs in Assaf lambs are implicated in fat burning, whereas the Churra upregulated DEGs are linked to fat accumulation. These results can help to increase knowledge of the genes controlling early fat deposition in ruminants and shed light on fundamental aspects of adipose tissue growth.

Causes of mortality in breeding rabbits.

In this study we determined mortality in breeding rabbits on 505 commercial farms in Spain during 2006-2014. We obtained our information by carrying out 3278 visits to 490 doe farms (127 also with males), and 877 visits to farms with males, including 132 visits to 15 artificial insemination (AI) centres. The median size of the farms was 769 does (minimum to maximum: 80-9000 does) and 44 males (minimum to maximum: 10-800 males). AI was used on 85% of the 490 doe farms. Females were serviced at 11 days postpartum on 75% of the farms. The mean Monthly Mortality Risk (MMR%) and 95% Binomial confidence interval (CI) in does were 2.82 (2.71-2.93%), and 1.87 (1.41-2.33%) in bucks, over a population of 2,641,709 females and 90,316 males at risk, in the course of the 9-year study; during the 42-day cycle, MMR% was 3.78 (3.67-3.89%). There were 9547 cohorts of females; 41.5% of the does were pregnant and lactating simultaneously, 28.1% only lactating, 17.4% only pregnant and 13% empty and not lactating. The MMR% of does during the last week of pregnancy was 7.05 (6.63-7.47%) and 4.26 (3.90-4.62%) during the 1st week of lactation. Our diagnoses were based on the macroscopic post-mortem examinations performed by a veterinarian on 2065 female rabbits found dead and 368 moribund-euthanized does. In the total 2433 on-farm necropsies on does and 55 males, we found alterations of the respiratory tract compatible with death in 0.70 (0.64-0.76%) MMR% in does, 0.88 (0.56-1.20%) in bucks; and digestive tract in 0.31 (0.27-0.35%) enteritis-diarrhoea, 0.11 (0.09-0.13%) mucoid enteropathy in does and 0.34 (0.14-0.54%) and 0.07 (0-0.16%) in males, respectively. Other primary causes of death were septicaemia, MMR% 0.23 (0.20-0.26%) in does, and 0.10 (0-0.22%) in males, viral haemorrhagic disease 0.22 (0.19-0.25%) in does, and 0.17 (0.03-0.31%) in bucks, metritis, pyometra, or both, 0.21 (0.19-0.25%), and uterine torsion, 0.20 (0.18-0.22%); 1.2 (1.01-1.39%) in the last week of pregnancy. The median age of 2087/2433 necropsied does was 2 parities (minimum to maximum: 1-34 parities) and the mean 3.9. Some changes in housing, feeding and management, to improve breeding rabbit health, are highlighted.

Monitoring changes in the demographic and genealogical structure of the main Spanish local beef breeds.

Demographic and pedigree analyses describe the structure and dynamics of livestock populations. We studied information recorded in the herdbooks of Asturiana de los Valles (AV; N = 458,806), Avileña-Negra Ibérica (ANI; N = 204,623), Bruna dels Pirineus (BP; N = 62,138), Morucha (Mo; N = 65,350), Pirenaica (Pi; N = 217,428), Retinta (Re; N = 135,300), and Rubia Gallega (RG; N = 235,511) beef breeds from their creation until 2009. All breeds have increased in the number of registered cows in recent years. In all breeds, herds do not behave as isolated entities and a high rate of exchange of breeding males between herds exists. A percentage of herds (12-52%) make some type of selection and sell bulls to other herds. There were large differences in average number of progeny per bull, ranging from 15.6 (AV) to 373.7 animals (RG, with a high incidence of AI). Generation interval estimates ranged from 4.7 (AV) to 7.6 (RG) yr in the sire pathway and from 5.95 (AV) to 7.8 (Mo) yr in the dam pathway. Density of pedigrees varied among breeds, with Pi, ANI, and Re having the more dense pedigrees, with average completeness indexes of more than 96% in the first generation and 80% when 6 generations were considered. A general increase in average inbreeding was observed in all breeds in the years analyzed. For animals born in 2009, average inbreeding coefficients ranged from 0.6 (BP) to 7.2% (Re) when all animals were considered and from 3.6 (Pi) to 17.6% (BP) when only inbred animals were considered. Due to the lack of completeness of pedigrees in most populations, inbreeding coefficients may be considered as a lower bound of the true parameters. The proportion of inbred animals tended to increase in the periods analyzed in all breeds. Differences between inbreeding and coancestry rates (except in RG) suggest the presence of population structure. Effective population size (Ne) based on the inbreeding rate estimated by regression ranged from 43 to 378 for Re and BP, whereas Ne estimates based on coancestry were greater, with a range of 100 for RG to 9,985 for BP. These facts suggest that an adequate mating policy can help to monitor inbreeding so as not to lose genetic variability. Effective number of ancestors in 2009 for 6 of the breeds ranged from 42 (RG) to 220 (AV), with BP having much a greater value, and was lower than was the effective number of founders in all breeds, suggesting the existence of bottlenecks.

Identification of quantitative trait loci underlying milk traits in Spanish dairy sheep using linkage plus combined linkage disequilibrium and linkage analysis approaches.

In this study, 2 procedures were used to analyze a data set from a whole-genome scan, one based on linkage analysis information and the other combing linkage disequilibrium and linkage analysis (LDLA), to determine the quantitative trait loci (QTL) influencing milk production traits in sheep. A total of 1,696 animals from 16 half-sib families were genotyped using the OvineSNP50 BeadChip (Illumina Inc., San Diego, CA) and analysis was performed using a daughter design. Moreover, the same data set has been previously investigated through a genome-wide association (GWA) analysis and a comparison of results from the 3 methods has been possible. The linkage analysis and LDLA methodologies yielded different results, although some significantly associated regions were common to both procedures. The linkage analysis detected 3 overlapping genome-wise significant QTL on sheep chromosome (OAR) 2 influencing milk yield, protein yield, and fat yield, whereas 34 genome-wise significant QTL regions were detected using the LDLA approach. The most significant QTL for protein and fat percentages was detected on OAR3, which was reported in a previous GWA analysis. Both the linkage analysis and LDLA identified many other chromosome-wise significant associations across different sheep autosomes. Additional analyses were performed on OAR2 and OAR3 to determine the possible causality of the most significant polymorphisms identified for these genetic effects by the previously reported GWA analysis. For OAR3, the analyses demonstrated additional genetic proof of the causality previously suggested by our group for a single nucleotide polymorphism located in the α-lactalbumin gene (LALBA). In summary, although the results shown here suggest that in commercial dairy populations, the LDLA method exhibits a higher efficiency to map QTL than the simple linkage analysis or linkage disequilibrium methods, we believe that comparing the 3 analysis methods is the best approach to obtain a global picture of all identifiable QTL segregating in the population at both family-based and population-based levels.

Relationship among specific bacterial counts and total bacterial and somatic cell counts and factors influencing their variation in ovine bulk tank milk.

To analyze the relationship among the counts of different organisms and total bacterial count (BTTBC) and somatic cell count (BTSCC) as determined in dairy laboratories in ovine bulk tank milk, 751 bulk tank milk samples from 205 dairy sheep flocks belonging to Consortium for Ovine Promotion (CPO) were collected between January and December 2011. Four samplings were carried out in each flock, once per season, throughout 1 yr. Variables analyzed were bulk tank counts of thermoduric, psychrotrophic, coliform, and gram-positive catalase-negative cocci (GPCNC) bacterial groups. Thermoduric, psychrotrophic, and coliform species were significantly related to BTTBC, whereas GPCNC were correlated with both BTTBC and BTSCC variables. Highest counts were for psychrotroph and coliform groups, and a moderate to high correlation (r=0.51) was found between both variables, indicating that poor cleaning practices in the flocks tend to select for less-resistant organisms, such as gram-negative rods. In addition, BTTBC correlated with BTSCC (r=0.42). Some variation factors for specific bacterial counts, such as breed, season, milking type, dry therapy, and milk yield, were also analyzed. Flock information was collected from flock books, annual audits, and the CPO traceability system. Psychrotrophs and coliforms had elevated counts in winter, whereas GPCNC were higher in summer and in hand-milked flocks. Dry therapy contributed to the reduction in psychrotrophic bacteria; therefore, some strains of mammary pathogens could also be psychrotrophic bacteria. Results of this study would be helpful for troubleshooting milk quality problems and developing premium payment systems in dairy sheep.

Development of the Morphostructure and Meat Value in Chilota Lambs / Desarrollo de la Morfoestructura y el Valor Carnicero en Corderos Chilotes

Chilota sheep are typical of the Chiloé archipelago in southern Chile. The objectives of this study were: 1) To describe the development of the morphostructure of Chilota lambs in their first months of life using some variables that determine lamb meat value (zoometric traits and body weight) and 2) To determine the optimum slaughter age. Measurements were taken from 12 male single-born lambs. Body weight, Withers height; Perimeter of thorax, Chest depth, Shoulder point width and Body length were measured in each animal. The first measurements were taken at 7 days old, and the rest at 37, 67, 97, 127, 157 and 187 days old. The body weight variables and zoometric traits developed allometrically throughout the growth phase. The correlation coefficient between all the traits was very high, varying between 0.91 and 0.98. The zoometric variable that best predicted body weight was Perimeter of thorax (r2=0.93), which was fully developed in 90% of the animals at 97 days old. Maximum growth was recorded in all the studied variables during the first control month, days 7-37, but then it decreased gradually. This decrease was moderate until day 127, becoming very low from then on until end of the study. The optimum age for slaughtering fattened lambs is approximately four months, as from day 127 the daily growth rate slows down considerably, to 61.81 g/day, in comparison with the previous stage, which is 220.00 g/day. Therefore, the maintenance of lambs after four months is not productively efficient.

La oveja Chilota es una raza típica del archipiélago de Chiloé en el sur de Chile. Se midieron 12 corderos machos nacidos de parto único. En cada animal se midieronel peso corporal, la alzada a la cruz, el perímetro del tórax, diámetro dorso esternal, diámetro bicostal y la longitud corporal. Las primeras mediciones se tomaron a los 7 días de edad, y el resto a los 37, 67, 97, 127, 157 y 187 días de edad. El peso corporal y los rasgos zoométricos se desarrollaron alométricamente a lo largo de la fase de crecimiento. El coeficiente de correlaciónentre todos los rasgos fue muy elevado, variando entre 0,91 y 0,98. La variable zoométrica mejor predicha por el peso corporal fue el perímetro torácico (r2=0,93), el cual estuvo totalmente desarrollado en el 90% de los animales a los 97 días de edad. El crecimiento máximo fue registrado durante el primer mes de control (días 7-37) para todas las variables estudiadas, pero posteriormente decreció de forma gradual. Este decrecimiento fue moderado hasta el día 127, volviéndose muy lento hacia el final del estudio. La edad óptima para el sacrificio de los corderos es aproximadamente de 4 meses, dado que a partir del día 127 la tasa diaria de crecimiento disminuye considerablemente, a 61,81 g/día, en comparación con la etapa previa, donde esta tasa es de 220,00 g/día.Por lo tanto, el sacrificio de los corderos más allá de los 4 meses de edad no resulta productivamente eficiente.

Body weight and body condition of breeding rabbits in commercial units.

Live BW and BCS data were collected from 2,775 breeding rabbits (644 males and 2,131 females) of 34 genetic types and sorted according to their specialization (maternal, paternal, and others). Data were gathered on 66 visits to 43 commercial farms in Spain between 2009 and 2011. Mean BW was 4.72 kg (range of 2.87 to 8.13 kg, with a median BW of 4.60 kg) and mean BCS was 4.6 (range of 1.0 to 9.0, with a median BCS of 5.0). females had heavier (P < 0.05) BW than males and paternal lines of rabbits had greater (P < 0.05) BW than maternal lines and other breeds/lines not selected for meat production. Between 69.3% and 75.4% of the rabbits were deemed healthy by a veterinarian and, as expected, healthy rabbits were heavier (P < 0.05) than sick rabbits diagnosed with rhinitis, mastitis, sore hocks, and several other diseases. Among purebred, maternal lines of rabbits, Hyplus GD24, UPV A, and UPV V were heavier (P < 0.05) than hyplus GD14 and Hyla HL-D lines, and line UPV R had the greatest (P < 0.05) BW among the purebred, paternal lines. Additionally, A×H, A×V, PS19, and P×A crossbreds had greater (P < 0.05) BW than HE-C×D, HL-C×D, H×V, LP×V, and V×P crossbreds among the maternal lines, whereas HE-SL were the heaviest (P < 0.05) crossbred paternal line of rabbits. Additionally, females received greater (P < 0.05) BCS than males and BCS were greater (P < 0.05) in healthy than sick rabbits. Moreover, maternal lines had smaller (P < 0.05) BCS than either paternal lines or other lines/breeds not selected for meat production. Results also indicated a moderate relationship between BCS and BW (r = 0.32), with a 1-point change in BCS equivalent to an ~ 245-g change in BW. results from this study can be used as baseline figures for breeding rabbits in spain and are essential factors in several decisions concerning housing, feeding, reproduction, health, and welfare of breeding rabbits.

Health and body condition of lactating females on rabbit farms.

The aim was to study relationships between morbidity, defined through prevalence of diseases of rabbit females, and BCS, and to assess the effect of several risk factors on both morbidity and BCS. Our study was based on individual examinations of 18,510 does in lactation on 103 farms. We evaluated BCS on a linear scale from 1 to 9, with 5 being the optimum. Prevalence of major diseases were 22.7%, 4.0%, and 6.4% for coryza, mastitis, and ulcerative pododermatitis, respectively. In addition, prevalence was 3.0% for diseases of minor presentation, including mange, which had a prevalence of 1.9%. The BCS of the R line (selected for growth) was 5.55 ± 0.14, whereas for the A line (selected for litter size) it was 4.40 ± 0.11. Females with more than 20 kindlings had on average a BCS 0.25 ± 0.07 units less than those in the 12th lactation (P = 0.0002). Optimal BCS 4.60 ± 0.11 was reached during the third lactation week. Sick females had a BCS of 0.6 ± 0.01 units less than healthy females. Females with a footrest had on average a BCS 0.19 ± 0.05 units greater than those without. The absence of footrests was an enabling risk factor for ulcerative pododermatitis, the prevalence of which increased by 53%. Ulcerative pododermatitis was associated (P = 0.045) with diet; females consuming a rich energy diet were prone to having this disorder; 1 SD increase in DE (0.32 MJ) determined an increase in ulcerative pododermatitis prevalence of 0.8 percentage points. Diet was not an enabling risk factor for the other diseases. The genetic type to which a female belongs is a predisposing risk factor of disease; P, V and H were also maternal lines, while S group was exclusively formed by maternal lines. With regard to coryza, the S group had the greatest prevalence (44.0%), followed by A, P, R (19.0 to 21.0%); the V line, selected for prolificacy, showed the least prevalence (12.0%). For the case of mastitis although significant (P < 0.05), the magnitude of the differences between disease prevalence was less; R line had a mastitis prevalence of 11.0% while the least prevalence was observed for V does (4.0%). Simultaneous evaluation of both BCS and morbidity on the rabbit farm is recommended for the right assessment of welfare conditions. In this study, the relationships between both variables have been shown, as well as how other intrinsic and extrinsic risk factors modulate these variables; and thus, these factors should be considered during a welfare assessment.

A genome scan for quantitative trait loci affecting body conformation traits in Spanish Churra dairy sheep.

A genome scan for chromosomal regions influencing body conformation traits was conducted for a population of Spanish Churra dairy sheep following a daughter design. A total of 739 ewes from 11 half-sib sire families were included in the study. The ewes were scored for the 5 linear traits used in the breeding scheme of the Churra breed to assess body conformation: stature, rear legs-rear view, foot angle, rump width, and general appearance. All the animals, including the 11 sires, were genotyped for 181 microsatellite markers evenly distributed across the 26 sheep autosomes. Using the yield deviations of the raw scores adjusted for fixed factors as phenotypic measurements, a quantitative trait loci (QTL) analysis was performed on the basis of a multi-marker regression method. Seven suggestive QTL were identified on chromosomes Ovis aries (OAR)2, OAR5, OAR16, OAR23, and OAR26, but none reached a genome-wise significance level. Putative QTL were identified for all of the traits analyzed, except for general appearance score. The suggestive QTL showing the highest test statistic influenced rear legs-rear view and was localized on OAR16, close to the growth hormone receptor coding gene, GHR. Some of the putative linkage associations reported here are consistent with previously reported QTL in cattle for similar traits. To the best of our knowledge, this study provides the first report of QTL for body conformation traits in dairy sheep; further studies will be needed to confirm and redefine the linkage associations reported herein. It is expected that future genome-wide association analyses of larger families will help identify genes underlying these putative genetic effects and provide useful markers for marker-assisted selection of such functional traits.

Factors influencing variation of bulk milk antibiotic residue occurrence, somatic cell count, and total bacterial count in dairy sheep flocks.

To study the variations of bulk tank milk variables in dairy ewe flocks and to identify the main target practices and flock groups to improve milk quality and safety, a total of 71,228 records of antibiotic residue (AR) and milk yield and 68,781 records of somatic cell count (SCC) and total bacterial count (TBC) were obtained over 5 yr from the same 209 dairy ewe flocks of the Assaf breed belonging to the Consortium for Ovine Promotion of Castilla-León (Spain). Based on a logistic regression model, year, month, semester, SCC, TBC, dry therapy, and milk yield significantly contributed to AR variation. High SCC was associated with increased AR violations. When antibiotic dry therapy was implemented, AR occurrence was higher than when this practice was not used. A polynomial monthly distribution throughout the year was observed for AR occurrence; the highest values were in autumn, coinciding with low milk yields per flock. Yearly occurrences drastically diminished from 2004 (1.36%) to 2008 (0.30%), probably as a result of effective educational programs. The mixed-model ANOVA of factors influencing variation in SCC and TBC indicated that year, month, AR, dry therapy group, milking type, and year interactions were significant variation factors for SCC and TBC; mathematical model accounted for 74.1 and 35.4% of total variance for each variable, respectively. Differences in management and hygiene practice caused significant SCC and TBC variations among flocks and within flocks throughout the 5-yr study. Over time, continuously dry treated flocks showed lower logSCC (5.80) and logTBC (4.92) than untreated (6.10 and 5.18, respectively) or discontinuously dry treated (6.01 and 5.05, respectively) flocks. Continuously dry treated flocks had lower AR occurrences than did discontinuously dry treated flocks. As a whole, AR occurrence and SCC and TBC bulk tank milk variables can be used for monitoring mammary health and milk hygiene and safety in dairy sheep throughout time.

Genetic determination of fatty acid composition in Spanish Churra sheep milk.

The objective of this study was to estimate the genetic variation of ovine milk fatty acid (FA) composition. We collected 4,100 milk samples in 14 herds from 976 Churra ewes sired mostly by 15 AI rams and analyzed them by gas-liquid chromatography for milk fatty acid composition. The studied traits were 12 individual FA contents (proportion in relation to the total amount of FA), 3 groups of fatty acids [saturated fatty acids (SFA), monounsaturated FA (MUFA), and polyunsaturated FA (PUFA)], and 2 FA ratios (n-6:n-3 and C18:2 cis-9,trans-11:C18:1 trans-11). In addition, percentages of fat and protein and daily milk yield were studied. For the analysis, repeatability animal models were implemented using Bayesian methods. In an initial step, univariate methods were conducted to test the hypothesis of the traits showing additive genetic determination. Deviance information criterion and Bayes factor were employed as model choice criteria. All the studied SFA showed additive genetic variance, but the estimated heritabilities were low. Among unsaturated FA (UFA), only C18:1 trans-11 and C18:2 cis-9,cis-12 showed additive genetic variation, their estimated heritabilities being [marginal posterior mean (marginal posterior SD)] 0.02(0.01) and 0.11(0.04), respectively. For the FA groups, only PUFA showed significant additive genetic variation. None of the studied ratios of FA showed additive genetic variation. In second multitrait analyses, genetic correlations between individual FA and production traits, and between groups of FA and ratios of FA and production traits, were investigated. Positive genetic correlations were estimated among medium-chain SFA, ranging from 0 to 0.85, but this parameter was close to zero between long-chain SFA (C16:0 and C18:0). Between long- and medium-chain SFA, estimated genetic correlations were negative, around -0.6. Among those UFA showing significant additive genetic variance, genetic correlations were close to zero. The estimated genetic correlations among all the investigated FA, milk yield, and fat and protein percentages were not different from zero. Our results suggest that low additive genetic variation is involved in the determination of the FA composition of milk fat in Churra sheep under current production conditions, which results in low values of heritabilities.

Genetic parameters for resistance to trichostrongylid infection in dairy sheep.

In sheep, the traditional chemical control of gastrointestinal nematode (GIN) parasites with anthelmintics has led to the widespread development of anthelmintic resistance. The selection of sheep with enhanced resistance to GIN parasites has been suggested as an alternative strategy to develop sustainable control of parasite infections. Most of the estimations of the genetic parameters for sheep resistance to GIN parasites have been obtained from young animals belonging to meat- and/or wool-specialised breeds. We present here the estimated genetic parameters for four parasite resistance traits studied in a commercial population of adult Spanish Churra dairy ewes. These involved two faecal egg counts (FECs) (LFEC0 and LFEC1) and two serum indicator traits, the anti-Teladorsagia circumcincta fourth stage larvae IgA (IgA) and the pepsinogen (Peps) levels. In addition, this study has allowed us to identify the environmental factors influencing parasite resistance in naturally infected Spanish Churra sheep and to quantify the genetic component of this complex phenotype. The heritabilities estimated for the two FECs analysed (0.12 for LFEC0 and 0.09 for LFEC1) were lower than those obtained for the examined serum indicators (0.19 for IgA and 0.21 for Peps). The genetic correlations between the traits ranged from 0.43 (Peps-IgA) to 0.82 (LFEC0-LFEC1) and were higher than their phenotypic counterparts, which ranged between 0.07 and 0.10. The heritabilities estimated for the studied traits were lower than previously reported in lambs. This may be due to the differences in the immune mechanisms controlling the infection in young (antibody reactions) and adult (hypersensitivity reactions) animals/sheep. In summary, this study demonstrates the presence of heritable variation in parasite resistance indicator traits in the Churra population studied, which suggests that genetic improvement is feasible for this complex trait in this population. However, further studies in which the experimental variables are controlled as much as possible are needed to identify the best trait that could be measured routinely in adult sheep as an indicator of parasite resistance.

Factors influencing variation of fatty acid content in ovine milk.

Between January 2006 and December 2007, a total of 4,579 test-day observations for contents of milk fatty acids (FA) were obtained from 2,218 lactations of 1,109 ewes belonging to 14 Churra dairy flocks. The 36 analyzed FA were quantified as grams per 100 g of total FA and were grouped as 18 dependent variables: 10 FA, 6 groups of FA, and 2 FA indexes. Flock, day of testing within flock (TD), ewe age, stage of lactation, and season effects contributed significantly to variations in FA. The 2 most important variation factors were flock (3 to 30% of total variance) and TD (35 to 70% of total variance). The percentage of variance explained by the TD effect for conjugated linoleic acid (CLA, C18:2 cis-9, trans-11) and linolenic acid (C18:3 cis-9, cis-12, cis-15) was particularly high: 60.7 and 68.2%, respectively. The season effect was also a very important variation factor, closely linked to feeding. The most significant seasonal variations were observed in polyunsaturated FA, with the highest values occurring in spring and summer and the lowest in winter. More specifically, CLA and linolenic acid contents were 44 and 30% higher in spring-summer than in winter. As the age of the ewe increased, the monounsaturated and polyunsaturated FA decreased and the short- and medium-chain saturated FA increased. The CLA and the CLA/C18:1 trans-11 Delta(9)-desaturase index increased significantly throughout lactation. The correlation coefficient between rumenic acid (CLA) and vaccenic acid was high (0.47) because of the precursor-product relationship via the Delta(9)-desaturase enzyme. The correlation coefficients were high between C10:0 and C12:0 (0.79), C12:0 and C14:0 (0.73), and C14:0 and C16:0 (0.29), probably because of their similar metabolic origin. Positive correlations were also obtained among the C(18) FA family. All the studied factors of FA variation would be considered as fixed effects in the statistical models used for estimation of genetic and phenotypic parameters from test-day records of commercial flocks.

Quantitative trait loci underlying milk production traits in sheep.

Improvement of milk production traits in dairy sheep is required to increase the competitiveness of the industry and to maintain the production of high quality cheese in regions of Mediterranean countries with less favourable conditions. Additional improvement over classical selection could be reached if genes with significant effects on the relevant traits were specifically targeted by selection. However, so far, few studies have been undertaken to detect quantitative trait loci (QTL) in dairy sheep. In this study, we present a complete genome scan performed in a commercial population of Spanish Churra sheep to identify chromosomal regions associated with phenotypic variation observed in milk production traits. Eleven half-sib families, including a total of 1213 ewes, were analysed following a daughter design. Genome-wise multi-marker regression analysis revealed a genome-wise significant QTL for milk protein percentage on chromosome 3. Eight other regions, localized on chromosomes 1, 2, 20, 23 and 25, showed suggestive significant linkage associations with some of the analysed traits. To our knowledge, this study represents the first complete genome scan for milk production traits reported in dairy sheep. The experiment described here shows that analysis of commercial dairy sheep populations has the potential to increase our understanding of the genetic determinants of complex production-related traits.

Short communication: effect of dry therapy using an intramammary infusion on bulk tank somatic cell count in sheep.

A total of 3,141 records of bulk tank milk somatic cell counts (BTSCC) and bulk tank milk total bacterial counts (BTTBC) were obtained over 24 mo from 25 dairy flocks of Assaf ewes belonging to the Consortium for Ovine Promotion in Castilla-León, Spain, in which a complete dry therapy program was carried out in 10,313 ewes using an antibiotic infusion containing 100 mg of penethamate hydriodide, 280 mg of benethamine penicillin, and 100 mg of framycetin sulfate. The selection criteria for all flocks were BTSCC mean values > or =1,000 x 10(3) cells/mL and absence of dry therapy before the start of this experiment. Significant effects on log BTSCC were detected for treatment, milking system, flock within milking system, month within flock by treatment, the interactions treatment by milking system and flock by treatment within milking system, and log BTTBC. After dry therapy was implemented, log BTSCC decreased significantly in machine-milked flocks (5.95 +/- 0.007) compared with values before antibiotic treatment (6.13 +/- 0.008). The effect was observed at the beginning of the second lactation posttreatment (5.98 +/- 0.013). However, dry therapy was not effective in hand-milked flocks, suggesting poor hygiene conditions. A significant relationship was found between BTSCC and BTTBC; therefore, programs for improving milk hygiene should be implemented for both BTSCC and BTTBC variables at the same time.

Culling and mortality in breeding rabbits.

In this study, we determined culling and mortality in adult breeding rabbits on 130 commercial farms in Spain during 2000-2005. The median size of the farms was 595 does (minimum to maximum: 131-5500 does). The median culling age per doe was 14.9 months old and 6 kindlings. The median monthly removal risk (MMR) in does was 9.3%, with 3.4% dead and 5.7% culled (including euthanized does). The MMR was negatively correlated with the degree of intensification of the reproductive rhythm (r=-0.37), age at first mating (r=-0.31) and kindling interval (r=-0.36). The MMR in males was 5.8% (1.2% dead and 4.2% culled or euthanized). Our estimation of the causes of culling does was based on a population of 82,352 does, 50,834 of which were culled or euthanized. The highest causes, calculated using the median of the monthly cumulative incidence (MCI), were 1.3% low productivity (0.9% infertility and 0.4% other causes), 0.5% mastitis, 0.5% poor body condition and 0.3% sore hocks. The causes of culling males were estimated based a population of 6514 males, 5313 of which were culled. The highest causes were 2.0% MCI low productivity (0.9% infertility and 0.5% no libido); 0.3% abscesses, 0.3% sore hocks and 0.2% poor body condition. The mortality and culling risks after first kindling were 8.7% and 7%, respectively. The highest risks of mortality and culling in does occurred during the first three kindlings, but remained stable thereafter. The gestation stage affected mortality; the risk of mortality per day increased as pregnancy progressed. There was a bimodal distribution with a peak of dead females between days 10 and 15 of gestation (0.1-0.2% mortality risk per day (MD)) and another larger peak between days 25 and 33 (0.3% MD). In 1046 on-farm necropsies performed on females we found alterations of the respiratory and digestive tracts compatible with being causes of death in 29.4% and 27%, respectively.

Quantitative trait loci underlying udder morphology traits in dairy sheep.

A genome scan was conducted on the basis of the daughter design to detect quantitative trait loci (QTL) influencing udder morphology traits in Spanish Churra dairy sheep. A total of 739 ewes belonging to 11 half-sib families were genotyped for 182 microsatellite markers covering 3,248.2 cM (Kosambi) of the ovine autosomal genome. Phenotypic traits included scores for 5 linear udder traits: udder depth, udder attachment, teat placement, teat size, and udder shape. Quantitative measurements for the QTL analysis were calculated for each trait from evaluation scores using within-family yield deviations corrected for fixed environmental effects. Joint analysis of all families using Haley-Knott regression identified 5 regions that exceeded the 5% chromosome-wise significance threshold on chromosomes 7, 14, 15, 20, and 26. Based on the across-family results, a within-family analysis was carried out to identify families segregated according to the QTL and to estimate the QTL effect. The allelic substitution effect for individual families ranged from 0.47 to 1.7 phenotypic standard deviation units for udder shape on chromosome 15 and udder depth on chromosome 14, respectively. These QTL regions provide a starting point for further research aimed at the characterization of genetic variability involved in udder traits in Churra sheep. This paper presents the first report of a sheep genome scan for udder-related traits in a dairy sheep outbred population.

Short communication: Evaluation of the overall accuracy of the DeLaval cell counter for somatic cell count in ovine milk: effect of soak time in diluted and undiluted milk samples.

This study evaluated the performance of the DeLaval cell counter (DCC) when analyzing ovine milk with different soak times (defined as the permanence time of samples within the DCC cassette before starting the DCC counting procedure) in diluted and undiluted milk samples in 2 dairy sheep breeds. A total of 101 composite ovine milk samples (50 from Assaf ewes and 51 from Churra ewes), ranging between 50 x 10(3) and 2,200 x 10(3) cells/mL, were divided into 10 aliquots/milk to be analyzed by DCC. Four undiluted aliquots and 4 aliquots diluted 1:1 in PBS were analyzed by using soak times of 0, 1, 2, and 3 min/aliquot, and the other 2 aliquots were diluted 1:1 in propidium iodide or ethidium bromide staining solutions and analyzed by DCC. Milk samples were also analyzed by the Fossomatic method, as a reference. All analyses were carried out in duplicate. Undiluted milk samples with soak times >or=1 min showed large coefficients of regression (b = 0.96 to 0.98) and correlation (r > 0.99) when compared with the Fossomatic method. In these samples, DCC gave repeatability standard deviations (s(r) = 35 to 51 x 10(3) cells/mL) lower than other DCC analytical conditions (s(r) = 49 to 74 x 10(3) cells/mL), and their log SCC means (5.51 to 5.52) were close to the reference value (5.56). The log SCC means corresponding to samples diluted 1:1 in staining solutions (5.55) did not differ from the reference value; however, these aliquots had lower regression coefficients (b: 0.92 to 0.93). Samples diluted 1:1 in PBS and undiluted samples with a 0-min soak time showed a global accuracy similar to or lower than undiluted samples with soak times >or=1 min. Breed did not seem to affect the results. We concluded that undiluted raw milk with a soak time >or=1 min and analyzed by DCC shows suitable overall accuracy in ovine milk compared with the reference method and can be considered as the best option for on-farm use from an operational point of view.

Performance of blue-yellow screening test for antimicrobial detection in ovine milk.

Drug residues in milk are important because of public health and industrial implications. The detection limits of 25 antimicrobial agents were determined by the blue-yellow screening method in ovine milk. For each drug, 8 concentrations were tested on 20 ovine milk samples from individual ewes in midlactation. Detection limits determined by means of logistic regression were below European Union maximum residue limits (EU-MRL) for penicillin G (3 to 4 microg/kg), ceftiofur (96 to 107 microg/kg), framycetin (720 to 781 microg/kg), neomycin (915 to 1,084 microg/kg), and tylosin (44 to 51 microg/kg). Detection limits for ampicillin (5 to 6 microg/kg), cloxacillin (33 to 42 microg/kg), cefoperazone (73 to 82 microg/kg), cefalexin (160 to 202 microg/kg), gentamycin (355 to 382 microg/kg), streptomycin (3,063 to 3,593 microg/kg), tilmicosin (109 to 131 microg/kg), erythromycin (444 to 522 microg/kg), spyramicin (1,106 to 1,346 microg/kg), sulfadimethoxine (101 to 119 microg/kg), sulfathiazole (122 to 151 microg/kg), sulfamethazine (309 to 328 microg/kg), sulfanilamide (1,750 to 2,674 microg/kg), tetracycline (233 to 257 microg/kg), oxytetracycline (398 to 501 microg/kg), doxycycline (323 to 419 microg/kg), chlortetracycline (3,331 to 3,989 microg/kg), danofloxacin (4.7 to 5.5 mg/kg), enrofloxacin (41 to 46 mg/kg), and flumequin (63 to 71 mg/kg) were higher than the EU-MRL. Although the blue-yellow method showed improved sensitivity compared with other tests studied in ovine milk, the performance of screening methods for detecting antimicrobial agents in milk of this species should be improved.

Short communication: detection of quantitative trait loci influencing somatic cell score in Spanish Churra sheep.

Eleven half-sib ovine families, including 1,421 Spanish Churra ewes, were analyzed for 181 microsatellite markers spanning the entire autosomic ovine genome. Using a multimarker regression method, a daughter experimental design was used to identify putative quantitative trait loci (QTL) affecting the somatic cell score (SCS). Chromosome-wise significance thresholds were set empirically by permuting the phenotypic data. Marker order and genetic distances of the autosomic linkage map built for this commercial population were in accordance with the published ovine linkage map. An across-family association analysis revealed a region on chromosome 20 suggestive of evidence for a QTL. Segregation of the QTL into 2 families was inferred from the within-family analysis, and differences in the position of the suggested QTL were found between the 2 half-sib groups. This could be the result of incomplete information associated with the markers for the significant families. The location of the major histocompatibility complex in proximity to the across-family effect suggests this region may harbor a segregating QTL for the SCS in the Churra population. Studies in dairy cattle examining the SCS have reported linkage associations on corresponding bovine orthologous regions, supporting the validity of our findings.