Multifaceted Assessment of Wastewater-Based Epidemiology for SARS-CoV-2 in Selected Urban Communities in Davao City, Philippines: A Pilot Study.

Over 60 countries have integrated wastewater-based epidemiology (WBE) in their COVID-19 surveillance programs, focusing on wastewater treatment plants (WWTP). In this paper, we piloted the assessment of SARS-CoV-2 WBE as a complementary public health surveillance method in susceptible communities in a highly urbanized city without WWTP in the Philippines by exploring the extraction and detection methods, evaluating the contribution of physico-chemical-anthropogenic factors, and attempting whole-genome sequencing (WGS). Weekly wastewater samples were collected from sewer pipes or creeks in six communities with moderate-to-high risk of COVID-19 transmission, as categorized by the City Government of Davao from November to December 2020. Physico-chemical properties of the wastewater and anthropogenic conditions of the sites were noted. Samples were concentrated using a PEG-NaCl precipitation method and analyzed by RT-PCR to detect the SARS-CoV-2 N, RdRP, and E genes. A subset of nine samples were subjected to WGS using the Minion sequencing platform. SARS-CoV-2 RNA was detected in twenty-two samples (91.7%) regardless of the presence of new cases. Cycle threshold values correlated with RNA concentration and attack rate. The lack of a sewershed map in the sampled areas highlights the need to integrate this in the WBE planning. A combined analysis of wastewater physico-chemical parameters such as flow rate, surface water temperature, salinity, dissolved oxygen, and total dissolved solids provided insights on the ideal sampling location, time, and method for WBE, and their impact on RNA recovery. The contribution of fecal matter in the wastewater may also be assessed through the coliform count and in the context of anthropogenic conditions in the area. Finally, our attempt on WGS detected single-nucleotide polymorphisms (SNPs) in wastewater which included clinically reported and newly identified mutations in the Philippines. This exploratory report provides a contextualized framework for applying WBE surveillance in low-sanitation areas.

Influence of fat and oil type on the yield, physico-chemical properties, and microstructure of fat, oil, and grease (FOG) deposits.

Fat, oil, and grease (FOG) deposit, in the form of calcium soap, was found to cause sanitary sewer overflows due to its adhesion on pipe walls. To address this problem, laboratory-prepared calcium soaps have been used to investigate the formation mechanisms of FOG deposits. However, the fats and oils previously utilized were limited and some soap characteristics were not examined. This research attempted to probe through the properties of calcium soaps prepared from calcium chloride and the fats and oils of chicken, pork, palm olein, soybean, olive, and coconut to further understand FOG formation and stability. Results revealed that FOG deposits may occur as smooth, paste-like material or coarse, semi-solid substance depending on their exposure to excess fat/oil and calcium. The smooth soaps with more excess fat/oil demonstrated high apparent viscosity and consistency index, while the coarse soaps with large levels of calcium signified higher melting endset. Moreover, a soap microstructure showing evident networks and lesser void area displayed higher heat and rheological stability, respectively. Overall, fats and oils with higher oleic to palmitic acid ratio such as palm olein oil, olive oil, chicken fat, and pork fat produced soaps with greater yield and degree of saponification. Hence, establishments and authorities should be alert in managing and monitoring these wastes. On the other hand, soybean oil high in linoleic acid and coconut oil high in lauric acid do not pose an immediate threat to the sewer system since they only produced soaps in small quantity. However, their soaps showed high melting endset which could pose a serious effect when accumulated at large amount. On the whole, the fatty acid profile of fats and oils, the presence of excess fat/oil, and calcium content mainly dictate the appearance, melting, rheology, and microstructure of calcium soaps. Their distinct properties can be used as criteria in predicting the condition and stability of FOG deposits.