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1.
Article in English | MEDLINE | ID: mdl-38017017

ABSTRACT

Extracellular vesicles (EVs) are emerging as crucial materials for precision theragnostic applications. However, current separation methods are time-consuming, costly, and not scalable and deliver limited yields or purity. Here, we present EV precipitation by ionic strength modulation (ExoPRISM), a simple, low-cost, user-friendly, and readily adaptable approach for separating EVs in high yields without compromising their biological functions. Adding an electrolyte solution to blood plasma in small increments generates the sequential precipitation of proteins and EVs, allowing for fractional separation of EVs using low-speed centrifugation. The coprecipitated electrolytes are easily washed away, and the entire EV separation and washing process takes less than an hour. This approach successfully separates EVs from a broad range of volumes and types of biological fluids, including culture medium, urine, plasma, and serum, showing promise as a robust tool for next-generation liquid biopsies and regenerative medicine.

2.
Anal Bioanal Chem ; 409(12): 3261-3269, 2017 May.
Article in English | MEDLINE | ID: mdl-28255921

ABSTRACT

Recombinase polymerase amplification (RPA) is an elegant method for the rapid, isothermal amplification of nucleic acids. Here, we elucidate the optimal surface chemistry for rapid and efficient solid-phase RPA, which was fine-tuned in order to obtain a maximum signal-to-noise ratio, defining the optimal DNA probe density, probe-to-lateral spacer ratio (1:0, 1:1, 1:10 and 1:100) and length of a vertical spacer of the probe as well as investigating the effect of different types of lateral spacers. The use of different labelling strategies was also examined in order to reduce the number of steps required for the analysis, using biotin or horseradish peroxidase-labelled reverse primers. Optimisation of the amplification temperature used and the use of surface blocking agents were also pursued. The combination of these changes facilitated a significantly more rapid amplification and detection protocol, with a lowered limit of detection (LOD) of 1 · 10-15 M. The optimised protocol was applied to the detection of Francisella tularensis in real samples from hares and a clear correlation with PCR and qPCR results observed and the solid-phase RPA demonstrated to be capable of detecting 500 fM target DNA in real samples. Graphical abstract Relative size of thiolated lateral spacers tested versus the primer and the uvsx recombinase protein.


Subject(s)
DNA, Bacterial/genetics , Electrochemical Techniques/methods , Francisella tularensis/genetics , Nucleic Acid Amplification Techniques/methods , Animals , DNA Probes/analysis , DNA Probes/genetics , DNA, Bacterial/analysis , Francisella tularensis/isolation & purification , Limit of Detection , Models, Molecular , Rabbits , Recombinases/chemistry , Signal-To-Noise Ratio , Tularemia/diagnosis , Tularemia/microbiology , Tularemia/veterinary
3.
Anal Bioanal Chem ; 408(30): 8611-8620, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27220649

ABSTRACT

Electrochemical detection of solid-phase isothermal recombinase polymerase amplification (RPA) of Piscirickettsia salmonis in salmon genomic DNA is reported. The electrochemical biosensor was constructed by surface functionalization of gold electrodes with a thiolated forward primer specific to the genomic region of interest. Solid-phase RPA and primer elongation were achieved in the presence of the specific target sequence and biotinylated reverse primers. The formation of the subsequent surface-tethered duplex amplicons was electrochemically monitored via addition of streptavidin-linked HRP upon completion of solid-phase RPA. Successful quantitative amplification and detection were achieved in less than 1 h at 37 °C, calibrating with PCR-amplified genomic DNA standards and achieving a limit of detection of 5 · 10-8 µg ml-1 (3 · 103 copies in 10 µl). The presented system was applied to the analysis of eight real salmon samples, and the method was also compared to qPCR analysis, observing an excellent degree of correlation. Graphical abstract Schematic of use of electrochemical RPA for detection of Psiricketessia salmonis in salmon liver.


Subject(s)
DNA, Bacterial/analysis , Electrochemical Techniques , Fish Diseases/diagnosis , Nucleic Acid Amplification Techniques , Piscirickettsia/genetics , Piscirickettsiaceae Infections/veterinary , Animals , Biosensing Techniques/instrumentation , Biotinylation , DNA Primers/chemistry , Electrodes , Enzymes, Immobilized/chemistry , Fish Diseases/microbiology , Gold/chemistry , Horseradish Peroxidase/chemistry , Limit of Detection , Piscirickettsia/isolation & purification , Piscirickettsiaceae Infections/diagnosis , Piscirickettsiaceae Infections/microbiology , Recombinases/chemistry , Salmon/microbiology
4.
Anal Chim Acta ; 827: 95-102, 2014 May 27.
Article in English | MEDLINE | ID: mdl-24833000

ABSTRACT

The development of a solid-contact potentiometric sensor based on conducting rubbers using a carbon nanotubes ink is described here. Commercial rubbers are turned into conductive ones by a simple and versatile method, i.e. painting an aqueous dispersion of single-walled carbon nanotubes on the polymer surface. On this substrate, both the working ion-selective electrode and the reference electrode are built in order to form an integrated potentiometric cell. As a proof-of-principle, selective potassium electrodes are fully characterized giving comparable performances to conventional electrodes (sensitivity, selectivity, stability, linear range, limit of detection and reproducibility). As an application of the rubber-based electrodes, a bracelet was constructed to measure potassium levels in artificial sweat. Since rubbers are ubiquitous in our quotidian life, this approach offers great promise for the generation of chemical information through daily objects.


Subject(s)
Electrochemistry/instrumentation , Ink , Nanotubes, Carbon/chemistry , Rubber/chemistry , Electric Conductivity , Potassium/analysis , Potassium/chemistry , Potentiometry , Surface Properties
5.
Biosens Bioelectron ; 54: 674-8, 2014 Apr 15.
Article in English | MEDLINE | ID: mdl-24334283

ABSTRACT

Solid-phase isothermal DNA amplification was performed exploiting the homology protein recombinase A (recA). The system was primarily tested on maleimide activated microtitre plates as a proof-of-concept and later translated to an electrochemical platform. In both cases, forward primer for Francisella tularensis holarctica genomic DNA was surface immobilised via a thiol or an amino moiety and then elongated during the recA mediated amplification, carried out in the presence of specific target sequence and reverse primers. The formation of the subsequent surface tethered amplicons was either colorimetrically or electrochemically monitored using a horseradish peroxidase (HRP)-labelled DNA secondary probe complementary to the elongated strand. The amplification time was optimised to amplify even low amounts of DNA copies in less than an hour at a constant temperature of 37°C, achieving a limit of detection of 1.3×10(-13) M (4×10(6) copies in 50 µL) for the colorimetric assay and 3.3×10(-14) M (2×10(5) copies in 10 µL) for the chronoamperometric assay. The system was demonstrated to be highly specific with negligible cross-reactivity with non-complementary targets or primers.


Subject(s)
DNA, Bacterial/genetics , Francisella tularensis/genetics , Polymerase Chain Reaction/instrumentation , Base Sequence , DNA Probes/genetics , DNA, Bacterial/metabolism , Equipment Design , Humans , Limit of Detection , Molecular Sequence Data , Polymerase Chain Reaction/methods , Recombinases/metabolism , Tularemia/microbiology
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