ABSTRACT
Chilling requirement (CR) for bud dormancy completion determines the time of bud break in apple (Malus × domestica Borkh.). The molecular control of bud dormancy is highly heritable, suggesting a strong genetic control of the trait. An available Infinium II SNP platform for genotyping containing 8,788 single nucleotide polymorphic markers was employed, and linkage maps were constructed in a F1 cross from the low CR M13/91 and the moderate CR cv. Fred Hough. These maps were used to identify quantitative trait loci (QTL) for bud break date as a trait related to dormancy release. A major QTL for bud break was detected at the beginning of linkage group 9 (LG9). This QTL remained stable during seven seasons in two different growing sites. To increase mapping efficiency in detecting contributing genes underlying this QTL, 182 additional SNP markers located at the locus for bud break were used. Combining linkage mapping and structural characterization of the region, the high proportion of the phenotypic variance in the trait explained by the QTL is related to the coincident positioning of Arabidopsis orthologs for ICE1, FLC, and PRE1 protein-coding genes. The proximity of these genes from the most explanatory markers of this QTL for bud break suggests potential genetic additive effects, reinforcing the hypothesis of inter-dependent mechanisms controlling dormancy induction and release in apple trees.
ABSTRACT
ABSTRACT: Aluminum (Al) toxicity in plants is seen in about 15% of the soils worldwide, restraining yields in arable land. In Brazil, acidic soils limit production of wheat (Triticum aestivum L.) and other cereals. Al is toxic for most winter cereals when its concentration increases and soil pH is below 5. One of the main concerns with acidic soil is the increase in the mobility of Al3+ions. Al binds to cell walls in roots, preventing meristematic elongation in sensitive species, causing damage to the root system and results in lower yields. Al3+ forms highly stable complexes with phosphorus (P), limiting its availability to plants, as well as reducing cell division and elongation. To deal with Al toxicity, plants have developed strategies such as organic acid (OA) exudation by roots; this mechanism of detoxification has been well-characterized. OAs, in turn, chelate ions Al3, forming non-toxic compounds that do not penetrate the root system. Some genes responsible for Al tolerance in wheat have been identified, particularly TaALMT1 and TaMATE1B that transport malate and citrate OAs, respectively. In this review, we discussed the mechanisms by which Al damages roots those by which plants are protected, primarily through two genes. We also described the interaction of the ALMT1 gene with P and iron (Fe).
RESUMO: A toxicidade do alumínio (Al) às plantas é observada em cerca de 15% dos solos no planeta, sendo um fator restritivo à produtividade em terras cultiváveis. No Brasil, os solos ácidos são limitantes à produção de trigo (Triticum aestivum L.) e outros cereais. O Al é tóxico para a maioria dos cereais de inverno, quando a sua concentração aumenta e o pH do solo atinge valores inferiores a 5. Uma das principais preocupações sobre o solo ácido é o aumento da mobilidade dos íons Al3+. O Al pode se ligar as paredes celulares das raízes e, como consequência, impedir o alongamento meristemático em espécies sensíveis, provocando danos ao sistema radicular, que resulta em menor desempenho agronômico das plantas. O Al3+ é também capaz de formar complexos altamente estáveis com fósforo (P), limitando sua disponibilidade para as plantas, e também reduzindo a divisão e o alongamento celular. Para lidar com a toxicidade ao Al, as plantas desenvolveram algumas estratégias como a exsudação de ácido orgânicos (AOs) pelas raízes, sendo este mecanismo de destoxificação bem caracterizado. Os AOs, por sua vez, quelam ions Al3+ formando compostos não tóxicos que não penetram no sistema radicular. Alguns genes responsáveis pela tolerância ao Al em trigo foram identificados, com ênfase para TaALMT1 e TaMATE1B, que exsudam os AOs malato e citrato, respectivamente. Nesta revisão, discutimos os mecanismos pelos quais Al danifica raízes, bem como plantas protegem-se, através de dois genes principalmente. Também apresentamos a interação do gene ALMT1 com P e ferro (Fe).
ABSTRACT
Abstract The barley HvAACT1 gene codes for a citrate transporter associated with tolerance to acidic soil. In this report, we describe a single nucleotide polymorphism (SNP) in the HvAACT1 coding region that was detected as T-1,198 (in genotypes with lower root growth on acidic soil) or G-1,198 (greater root growth) and resulted in a single amino acid change (L/V-172). Molecular dynamic analysis predicted that HvAACT1 proteins with L or V-172 were stable, although the substitution led to structural changes within the protein. To evaluate the effect of the SNP on tolerance to acidic soil, barley accessions were separated into haplotypes based on the presence of a 1 kb insertion in the HvAACT1 promoter and a 21 bp insertion/deletion. These markers and the SNP-1,198 allowed the identification of five haplotypes. Short-term soil experiments showed no difference in root growth for most of the accessions containing the 21 bp insertion and T or G-1,198. In contrast, genotypes showing both the 21 bp deletion and G-1,198, with one of them having the 1 kb insertion, showed greater root growth. These results indicate that the SNP was not advantageous or deleterious when genotypes from the same haplotype were compared. The occurrence of the SNP was highly correlated with the 21 bp insertion/deletion that, together with the 1 kb insertion, explained most of the barley tolerance to acidic soil.
ABSTRACT
The barley HvAACT1 gene codes for a citrate transporter associated with tolerance to acidic soil. In this report, we describe a single nucleotide polymorphism (SNP) in the HvAACT1 coding region that was detected as T-1,198 (in genotypes with lower root growth on acidic soil) or G-1,198 (greater root growth) and resulted in a single amino acid change (L/V-172). Molecular dynamic analysis predicted that HvAACT1 proteins with L or V-172 were stable, although the substitution led to structural changes within the protein. To evaluate the effect of the SNP on tolerance to acidic soil, barley accessions were separated into haplotypes based on the presence of a 1 kb insertion in the HvAACT1 promoter and a 21 bp insertion/deletion. These markers and the SNP-1,198 allowed the identification of five haplotypes. Short-term soil experiments showed no difference in root growth for most of the accessions containing the 21 bp insertion and T or G-1,198. In contrast, genotypes showing both the 21 bp deletion and G-1,198, with one of them having the 1 kb insertion, showed greater root growth. These results indicate that the SNP was not advantageous or deleterious when genotypes from the same haplotype were compared. The occurrence of the SNP was highly correlated with the 21 bp insertion/deletion that, together with the 1 kb insertion, explained most of the barley tolerance to acidic soil.
ABSTRACT
Barley is a major cereal grown widely and used in several food products, beverage production and animal fodder. Genetic diversity is a key component in breeding programs. We have analyzed the genetic diversity of barley accessions using microsatellite markers. The accessions were composed of wild and domesticated barley representing genotypes from six countries and three breeding programs in Brazil. A total of 280 alleles were detected, 36 unique to Brazilian barley. The marker Bmag120 showed the greatest polymorphism information content (PIC), with the highest mean value found on chromosome three, and the lowest on chromosomes four and six. The wild accessions presented the highest diversity followed by the foreign genotypes. Genetic analysis was performed using Principal Coordinates Analysis, UPGMA clustering, and Bayesian clustering analysis implemented in Structure. All results obtained by the different methods were similar. Loss of genetic diversity has occurred in Brazilian genotypes. The number of alleles detected in genotypes released in 1980s was higher, whereas most of the cultivars released thereafter showed lower PIC and clustered in separate subgroups from the older cultivars. The use of a more diverse panel of genotypes should be considered in order to exploit novel alleles in Brazilian barley breeding programs.
ABSTRACT
A presença de alumínio (Al) reduz o rendimento em solos ácidos ou em áreas onde o subsolo possui pH abaixo de 5, pois limita o crescimento radicular e, consequentemente, a absorção de água e nutrientes. Genótipos elite de aveia (Avena sativa L.) não selecionados para a tolerância ao Al foram avaliados quanto a essa característica em solução nutritiva. Foi utilizada, como parâmetro de comparação da tolerância ao Al, a média de recrescimento radicular após a exposição ao Al. O recrescimento da raiz principal dos genótipos elite foi comparado com os controles UFRGS17, considerado tolerante e UFRGS930598-6, sensível. Foram avaliadas as linhagens UFRGS057005-1 e UFRGS057022-2, e as cultivares comerciais 'URSGuria', 'URSTorena', 'URSPenca', 'URSGuará', 'URS Charrua', 'URSTarimba', 'URSTaura', 'URSGuapa' e 'URS21'. A amplitude de recrescimento da raiz dentro de cada genótipo foi elevada, sendo a menor de 15mm e a maior de 44mm. As cultivares 'URSCharrua' e 'URSGuapa' demonstraram tolerância superior a 'UFRGS17'. URSTarimba, apesar da média similar a UFRGS17, mostrou distribuição de frequência mais positiva. URSTorena, UFRGS0570005-1 e URSPenca classificaram-se como intermediários, sendo inferiores a UFRGS17. Nenhum dos genótipos elite apresentou médias de recrescimento igual ou inferior às obtidas pelo controle sensível, UFRGS930598-6.
Oat genotypes were evaluated for aluminum (Al) tolerance in hydroponic solution. The ability of growing after being exposed to high Al (root regrowth) was used to evaluate the genotypes. The apical root regrowth for each genotype was compared to the controls: UFRGS17, Al tolerant, and UFRGS930598-6, Al sensitive. Two lines UFRGS057005-1 and UFRGS057022-2 and nine cultivars 'URSGuria', 'URSTorena', 'URSPenca', 'URSGuará', 'URSCharrua', 'URSTarimba', 'URSTaura', 'URSGuapa' and 'URS21' were evaluated. The root regrowth amplitude inside each genotype was high; the smallest one was 15mm and the largest one, 44mm. URSCharrua and URSGuapa showed higher tolerance than UFRGS17. Despite the similar mean to UFRGS17, URSTarimba regrowth frequency had a more positive skewness. URSTorena, UFRGS0570005-1 and URSPenca were classified as intermediate, being inferior to UFRGS17. None of the genotypes showed root regrowth equal or inferior to the sensitive control, UFRGS930598-6.
ABSTRACT
Nitrogen (N) and phosphorus (P) are the two most limiting nutrients for plant yield. Plants modify their metabolism and growth to cope with resources availability, consequently the integration of diverse signals is required. There is mounting evidence of N and P interaction, however, the sharing components of their signaling pathways have not been revealed yet. The pdr1 mutant has proved potentially useful in understanding the responses to nitrate (Ni), P and cytokinin. The mutation conferred pdr1 reduced root length in response to Ni under P deficiency and no effect of low cytokinin concentration. High N availability and high cytokinin caused strong root growth inhibition by different paths in wild type. Cytokinin repressed cell division, exhausted the quiescent center, caused changes in the pattern of AtPT1 expression and reduced AtACP5 expression. On the contrary, high N induced cell division as well as increased the expression of AtPT1 and AtACP5 even at high P availability. The data indicated interaction in the root modulation by N and P; and PDR1 is probably a signaling component of the nutritional status in Arabidopsis thaliana that modulates the response to N and P only partially mediated by cytokinin.
Subject(s)
ATP-Binding Cassette Transporters/genetics , Arabidopsis Proteins/genetics , Arabidopsis/genetics , Arabidopsis/metabolism , Cytokinins/metabolism , Mutation , Nitrogen/metabolism , Phosphorus/metabolism , Plant Roots/metabolism , ATP-Binding Cassette Transporters/metabolism , Adaptation, Physiological/genetics , Arabidopsis Proteins/metabolism , Gene Expression Regulation, Plant , Genes, Plant , Genetic Variation , Genotype , Plant Roots/growth & development , Plants, Genetically Modified , Signal Transduction , Stress, Physiological/geneticsABSTRACT
Os sistemas biológicos são governados pela soma de todos os genes expressos, proteínas, metabólitos e elementos de um organismo. A análise do ionoma de um tecido auxilia a identificar, entre outros aspectos, genes que contribuam para maior ou menor acúmulo de elementos essenciais e metais pesados, bem como a interação entre processos metabólicos. O conhecimento do ionoma, aliado ao uso de técnicas de biologia molecular, formam um sistema muito eficiente para mapeamento gênico, para estudos de genômica funcional e para caracterização geral do estado fisiológico das plantas em uma determinada condição. Além disso, o estudo do ionoma permite avaliar as interações existentes entre os mais diversos íons das plantas e como a disponibilidade de um íon afeta a absorção e uso de outros. O objetivo desta revisão é apresentar e discutir o ionoma como uma ferramenta importante na elucidação dos mais diversos mecanismos envolvidos na absorção, translocação e acúmulo de elementos essenciais e não-essenciais em plantas e sua relação com o metabolismo delas.
Biological systems are governed by the sum of all expressed genes, proteins, metabolites and components of an organism. The analysis of a tissue ionome helps to identify, among others, genes that contribute to a greater or lesser accumulation of essential elements and heavy metals, as well as interaction between metabolic processes. The ionome knowledge, coupled with the use of molecular biology techniques, form a very efficient system for gene mapping, and functional genomic studies, and general characterization of plants physiological status in a given condition. Another interesting process that the ionome study allows to analyse is the interactions among plants' ions and how such ion availability can affect the absorption and use of others. The aim of this review is to present and discuss the ionome as an important tool in the elucidation of several mechanisms involved in absorption, translocation and accumulation of essential and nonessential elements in plant and its relation with their metabolism.
