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J Mol Biol ; 294(2): 477-85, 1999 Nov 26.
Article in English | MEDLINE | ID: mdl-10610773

ABSTRACT

M-DNA is a complex of DNA with divalent metal ions (Zn(2+), Co(2+), or Ni(2+)) which forms at pH conditions above 8. Upon addition of these metal ions to B-DNA at pH 8.5, the pH decreases such that one proton is released per base-pair per metal ion. Together with previous NMR data, this result demonstrated that the imino proton in each base-pair of the duplex was substituted by a metal ion and that M-DNA might possess unusual conductive properties. Duplexes of 20 base-pairs were constructed with fluorescein (donor) at one end and rhodamine (acceptor) at the other. Upon formation of M-DNA (with Zn(2+)) the fluorescence of the donor was 95 % quenched. Fluorescence lifetime measurements showed the presence of a very fast component in the decay kinetics with tau

Subject(s)
DNA/chemistry , DNA/metabolism , Metals/metabolism , Base Sequence , Cobalt/chemistry , Cobalt/metabolism , Edetic Acid/chemistry , Fluorescein/chemistry , Fluorescence , Hydrogen-Ion Concentration , Metals/chemistry , Models, Molecular , Molecular Sequence Data , Nickel/chemistry , Nickel/metabolism , Nucleic Acid Conformation , Nucleic Acid Heteroduplexes , Protons , Rhodamines/chemistry , Time Factors , Zinc/chemistry , Zinc/metabolism
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