Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 48
Filter
1.
Foods ; 13(10)2024 May 14.
Article in English | MEDLINE | ID: mdl-38790828

ABSTRACT

Human noroviruses (HuNoVs) are among the main causes of acute gastroenteritis worldwide. HuNoVs can survive for several days up to weeks at room temperature in the environment, on food, and on food handling and processing surfaces. As a result, this could lead to viral spread through the ingestion of food in contact with contaminated surfaces. The development of stable surface materials with antiviral activity might be useful to reduce viral outbreaks. Metal-based compounds, including photoactivated titanium nanoparticles (TiO2 NPs), are known for their antiviral activity. In this study, we tested the impact of 2000 µg/mL TiO2 NPs, with or without UV activation, on HuNoV GII and murine norovirus. Their recovery rates were reduced by 99.6%. We also evaluated a new TiO2 NP-coating process on a polystyrene surface. This process provided a homogenous coated surface with TiO2 NPs ranging between 5 nm and 15 nm. Without photoactivation, this TiO2 NP-coated polystyrene surface reduced the recovery rates of intact HuNoV GII by more than 94%. When a capsid integrity treatment with PtCl4 or a longer reverse transcription polymerase chain detection approach was used to evaluate virus integrity following contact with the TiO2 NP-coated polystyrene, the HuNoV GII recovery yield reduction varied between 97 and 100%. These results support the hypothesis that TiO2 NP-coated surfaces have the potential to prevent viral transmission associated with contaminated food surfaces.

2.
Microbiol Spectr ; 12(6): e0022524, 2024 Jun 04.
Article in English | MEDLINE | ID: mdl-38687067

ABSTRACT

The detection of Clostridioides difficile infections (CDI) relies on testing the stool of patients by toxin antigen detection or PCR methods. Although PCR and antigenic methods have significantly reduced the time to results, delays in stool collection can significantly add to the turnaround time. The use of rectal swabs to detect C. difficile could considerably reduce the time to diagnosis of CDI. We developed a new rapid PCR assay for the detection of C. difficile and evaluated this PCR assay on both stool and rectal swab specimens. We recruited a total of 623 patients suspected of C. difficile infection. Stool samples and rectal swabs were collected from each patient and tested by our PCR assay. Stool samples were also tested by the cell cytotoxicity neutralization assay (CCNA) as a reference. The PCR assay detected C. difficile in 60 stool specimens and 61 rectal swabs for the 64 patients whose stool samples were positive for C. difficile by CCNA. The PCR assay detected an additional 35 and 36 stool and rectal swab specimens positive for C. difficile, respectively, for sensitivity with stools and rectal swabs of 93.8% and 95.3%, specificity of 93.7% and 93.6%, positive predictive values of 63.2% and 62.9%, and negative predictive values of 99.2% and 99.4%. Detection of C. difficile using PCR on stools or rectal swabs yielded reliable and similar results. The use of PCR tests on rectal swabs could reduce turnaround time for CDI detection, thus improving CDI management and control of C. difficile transmission. IMPORTANCE: Clostridioides difficile infection (CDI) is the leading cause of healthcare-associated diarrhea, resulting in high morbidity, mortality, and economic burden. In clinical laboratories, CDI testing is currently performed on stool samples collected from patients with diarrhea. However, the diagnosis of CDI can be delayed by the time required to collect stool samples. Barriers to sample collection could be overcome by using a rectal swab instead of a stool sample. Our study showed that CDI can be identified rapidly and reliably by a new PCR assay developed in our laboratory on both stool and rectal swab specimens. The use of PCR tests on rectal swabs could reduce the time for the detection of CDI and improve the management of this infection. It should also provide a useful alternative for infection-control practitioners to better control the spread of C. difficile.


Subject(s)
Clostridioides difficile , Clostridium Infections , Feces , Polymerase Chain Reaction , Rectum , Sensitivity and Specificity , Humans , Feces/microbiology , Clostridioides difficile/isolation & purification , Clostridioides difficile/genetics , Clostridium Infections/diagnosis , Clostridium Infections/microbiology , Polymerase Chain Reaction/methods , Rectum/microbiology , Female , Male , Aged , Middle Aged , Specimen Handling/methods , Adult , Aged, 80 and over
3.
Sci Total Environ ; 880: 163288, 2023 Jul 01.
Article in English | MEDLINE | ID: mdl-37028673

ABSTRACT

Viticulture needs to satisfy consumers' demands for environmentally sound grape and wine production while envisaging adaptation options to diminish the impacts of projected climate change on future productivity. However, the impact of climate change and the adoption of adaptation levers on the environmental impacts of future viticulture have not been assessed. This study evaluates the environmental performance of grape production in two French vineyards, one located in the Loire Valley and another in Languedoc-Roussillon, under two climate change scenarios. First, the effect of climate-induced yield change on the environmental impacts of future viticulture was assessed based on grape yield and climate data sets. Second, besides the climate-induced yield change, this study accounted for the impacts of extreme weather events on grape yield and the implementation of adaptation levers based on the future probability and potential yield loss due to extreme events. The life cycle assessment (LCA) results associated with climate-induced yield change led to opposite conclusions for the two vineyards of the case study. While the carbon footprint of the vineyard from Languedoc-Roussillon is projected to increase by 29 % by the end of the century under the high emissions scenario (SSP5-8.5), the corresponding footprint is projected to decrease in the vineyard from the Loire Valley by approximately 10 %. However, when including the effect of extreme events and adaptation options, the life cycle environmental impacts of grape production are projected to drastically increase for both vineyards. For instance, under the SSP5-8.5 scenario, the carbon footprint for the vineyard of Languedoc-Roussillon is projected to increase fourfold compared to the current footprint, while it will rise threefold for the vineyard from the Loire Valley. The obtained LCA results emphasized the need to account for the impact of both climate change and extreme events on grape production under future climate change scenarios.

4.
J Microbiol Methods ; 187: 106275, 2021 08.
Article in English | MEDLINE | ID: mdl-34182074

ABSTRACT

Four methods were tested for enumerating bacteria present in the absorbent pads (AP) used in packaging chicken and other meats. Viable counts were ascertained at day 0 and day 7 (d0 and d7, respectively). Sampling bacterial cells from AP were carried out using a countertop blender, Stomacher, sonication, and blender in combination to sonication. The release of bacterial cells by breaking down the AP with the blender resulted in the highest CFU counts. At d0, a bacterial recovery rate of 94% was obtained with the blender, while the recovery rates using Stomacher or sonication alone were 58% and 73%, respectively. At d7, the Stomacher treatment also gave the lowest colony forming unit (CFU) values in the AP incubated at 7 °C. Sonication of the AP prior to homogenization with the blender did not increase CFU counts. Results suggested that breaking down the AP with a blender gives higher CFU levels than the Stomacher, which is the most commonly used technique for this purpose.


Subject(s)
Bacteria/growth & development , Food Microbiology , Food Packaging , Meat , Animals , Bacterial Load , Bacteriological Techniques , Chickens , Cold Temperature , Refrigeration
5.
Food Microbiol ; 99: 103827, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34119112

ABSTRACT

Consumption of leafy greens and to a lesser extent fresh herbs has been associated with several foodborne outbreaks including human norovirus (HuNoV). However, the extraction and detection of viruses from these matrices present multiple challenges such as low recovery yields and relatively high PCR inhibition. A new magnetic silica bead based (MSB) extraction protocol was developed and used to recover norovirus from leafy greens and fresh herbs. The performance results were compared to the ISO 15216-1:2017 standard. The HuNoV GII.4 and GI.5 recovery yields from spiked lettuce using the MSB extraction protocol range from 33 to 82%. There was a good correlation between murine norovirus (MNV) and HuNoV recovery yields from fresh herbs and leafy greens. No reverse-transcriptase quantitative polymerase chain reaction (RT-qPCR) inhibition was detected from leafy green extracts using the MSB methodology. The selected commercial RT-qPCR detection kit had a major impact on RT-qPCR inhibition levels detected in the ISO 15216-1:2017 RNA extracts. RNase treatment was used to estimate genome recovery from HuNoV with intact capsids. This treatment resulted in similar HuNoV and MNV recovery yields. Between 2019 and 2020, the MSB protocol was used to conduct a survey of HuNoV in domestic and imported leafy greens and fresh herbs sold at retail in Canada. All of the 280 samples tested were negative. Overall, the use of MSB was shown to be an efficient approach to recover HuNoV from leafy greens and certain types of fresh herbs and to conduct surveys.


Subject(s)
Lactuca/virology , Magnetics/methods , Norovirus/isolation & purification , Silicon Dioxide/chemistry , Spices/virology , Animals , Canada , Food Contamination/analysis , Humans , Magnetic Phenomena , Magnetics/instrumentation , Norovirus/chemistry , Norovirus/genetics , Plant Leaves/virology , Real-Time Polymerase Chain Reaction
6.
Food Environ Virol ; 13(2): 248-258, 2021 06.
Article in English | MEDLINE | ID: mdl-33651330

ABSTRACT

Human noroviruses (HuNoV) are among the main causes of acute gastroenteritis worldwide. Frozen raspberries have been linked to several HuNoV food-related outbreaks. However, the extraction of HuNoV RNA from frozen raspberries remains challenging. Recovery yields are low, and real-time quantitative reverse transcriptase PCR (RT-qPCR) inhibitors limit the sensitivity of the detection methodologies. A new approach using fine magnetic silica beads was developed for the extraction of HuNoV spiked on frozen raspberries. Relatively low recovery yields were observed with both the magnetic silica bead and the reference ISO 15216-1:2017 methods. High RT-qPCR inhibition was observed with the ISO 15216-1:2017 recommended amplification kit but could be reduced by using an alternative kit. Reducing RT-qPCR inhibition is important to limit the number of inconclusive HuNoV assays thus increasing the capacity to assess the HuNoV prevalence in frozen raspberries.


Subject(s)
Immunomagnetic Separation/methods , Norovirus/isolation & purification , Rubus/virology , Silicon Dioxide/chemistry , Fruit/virology , Gastroenteritis/virology , Humans , Immunomagnetic Separation/instrumentation , Norovirus/chemistry , Norovirus/genetics , RNA, Viral/chemistry , RNA, Viral/genetics , RNA, Viral/isolation & purification , Real-Time Polymerase Chain Reaction
7.
Adv Colloid Interface Sci ; 277: 102106, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31981890

ABSTRACT

The attachment of microbial communities to surfaces is a well-known problem recognized to be involved in a variety of critical issues in the sectors of food processing, chronic wounds, infection from implants, clogging of membranes and corrosion of equipment. Considering the importance of the detrimental impact of biofouling, it has received much attention in the scientific community and from concerned stakeholders. With the development of nanotechnology and the nowadays widespread use of engineered nanoparticles (ENPs), concerns have been raised regarding their fate in terrestrial and aquatic environments. Safety aspects and public health issues are critical in the management of handling nanomaterials and their nanowastes. The interactions of various types of nanoparticles (NPs) with planktonic bacteria have also received attention due to their antimicrobial properties. However, their behavior in regard to biofilms is not well understood although, in the environment, most of the bacteria prefer living in sessile communities. The question appears relevant considering the need to build knowledge on the fate of nanoparticles and the fact that no one can exclude the risk of accumulation of nanoparticles in biofilms and on surfaces leading to a form of nanofouling involving both engineered nanoparticles (ENPs) and nanoplastics. The present analysis of recent research accounts allows in identifying that (1) research activities related to water remediation systems have been mostly oriented on the impact of NPs on pre-existing biofilms, (2) experimental designs are restricted to few scenarios of exposure, usually limited to relative short-time periods although nanofouling could favour the development of multi-resistant bacterial species through sub-lethal exposures over prolong periods of time (3) nanofouling in other systems in which biofilms develop remains to be addressed, and (4) new research directions are required for investigating the mechanisms involved and the subsequent impact of nanofouling on bacterial consortium responses encountered in a variety of environments such as those prevailing in food production/processing settings. Finally, this review aims at providing recent information and insights on nanoparticle-bacterial interactions in the context of biofilms in order to supply an updated outlook of research perspectives that could help establish the framework for production, use and fate of nanomaterials as well as future research directions.


Subject(s)
Bacteria/chemistry , Biofilms , Nanoparticles/chemistry , Bacteria/isolation & purification , Surface Properties , Thermodynamics
8.
Food Microbiol ; 82: 515-522, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31027813

ABSTRACT

The formation of biofilms in the food industry is a major issue, as they are a frequent source of contamination of products, which can result in significant economic losses for processors through spoilage of foods or pose serious health concerns for consumers when foodborne pathogens are present. In this study, experiments were carried out using CDC Biofilm Reactors to produce biofilms on two test surfaces (polystyrene and stainless steel coupons) under a regimen for simulated meat processing conditions (SMPC). This entailed a 12 day regimen of daily cycles of filling the reactors with a meat slurry and letting stand for 16 h, followed by draining and refilling with water for an 8 h period in order to mimic a possible scenario of fluctuating periods of nutrient availability and starvation in a meat processing facility. Strains of Pseudomonas fluorescens, Lactobacillus plantarum and Leuconostoc pseudomesenteroides were used for mono and mixed cultures biofilms as they are relevant spoilage bacteria in the meat processing industry. In monoculture, the viable cell densities (CFU/cm2) of the two lactic acid bacteria species tested were higher for biofilms grown on polystyrene as compared to those obtained on stainless steel, whereas viable cell numbers in P. fluorescens monoculture were surface-independent. Synergistic interactions were demonstrated during growth of multi-species biofilms. Results from experiments where one of the 3 strains was inoculated 24 h before introduction of the other two strains showed increased levels of L. plantarum within biofilms grown on both test surfaces. The model developed here serves as a baseline to study the interactions between potential spoilage bacteria during biofilm development.


Subject(s)
Bacteria/growth & development , Biofilms , Food Microbiology , Meat/microbiology , Microbial Interactions , Bacteria/classification , Bacterial Adhesion , Biofilms/growth & development , Colony Count, Microbial , Food Handling , Microbiota , Polystyrenes , Stainless Steel
9.
Adv Colloid Interface Sci ; 247: 149-162, 2017 Sep.
Article in English | MEDLINE | ID: mdl-28501099

ABSTRACT

Measuring surface (excess) entropies provides a bounty of valuable structural information that is hard to obtain otherwise. In the paper these quantities are defined and procedures of measurements discussed. Mostly they involve measurements at different temperatures. A review is given for interfaces with aqueous solutions in the absence of polymers. This review illustrates how, sometimes unanticipated, pieces of information are obtained, for example with cloud seeding and a possible explanation of the Jones-Ray effect. As a novel extension the procedure is applied to deposited, or Langmuir, monolayers of poly(ethylene oxide)-poly(propylene oxide) block copolymers. It will be shown how the various phase transitions and associated configurations of these polymers can be recognized and monitored.

10.
Sci Total Environ ; 581-582: 117-125, 2017 Mar 01.
Article in English | MEDLINE | ID: mdl-27988190

ABSTRACT

In life cycle assessment (LCA), the potential terrestrial ecotoxicity effect of metals, calculated as the effect factor (EF), is usually extrapolated from aquatic ecotoxicological data using the equilibrium partitioning method (EqP) as it is more readily available than terrestrial data. However, when following the AMI recommendations (i.e. with at least enough species that represents three different phyla), there are not enough terrestrial data for which soil properties or metal speciation during ecotoxicological testing are specified to account for the influence of soil property variations on metal speciation when using this approach. Alternatively, the TBLM (Terrestrial Biotic Ligand Model) has been used to determine an EF that accounts for speciation, but is not available for metals; hence it cannot be consistently applied to metals in an LCA context. This paper proposes an approach to include metal speciation by regionalizing the EqP method for Cu, Ni and Zn with a geochemical speciation model (the Windermere Humic Aqueous Model 7.0), for 5213 soils selected from the Harmonized World Soil Database. Results obtained by this approach (EFEqPregionalized) are compared to the EFs calculated with the conventional EqP method, to the EFs based on available terrestrial data and to the EFs calculated with the TBLM (EFTBLMregionalized) when available. The spatial variability contribution of the EF to the overall spatial variability of the characterization factor (CF) has been analyzed. It was found that the EFsEqPregionalized show a significant spatial variability. The EFs calculated with the two non-regionalized methods (EqP and terrestrial data) fall within the range of the EFsEqPregionalized. The EFsTBLMregionalized cover a larger range of values than the EFsEqPregionalized but the two methods are not correlated. This paper highlights the importance of including speciation into the terrestrial EF and shows that using the regionalized EqP approach is not an acceptable proxy for terrestrial ecotoxicological data even if it can be applied to all metals.


Subject(s)
Metals/chemistry , Soil Pollutants/chemistry , Ecotoxicology , Soil
11.
J Virol Methods ; 225: 1-3, 2015 Dec 01.
Article in English | MEDLINE | ID: mdl-26341060

ABSTRACT

We assessed the performance of Abbott RealTime CMV assay (ARC) compared to Roche Cobas Amplicor CMV Monitor Test (RCM) for quantification of CMV in plasma of transplant patients. Commercial panels were used to test linearity, precision and interference and 83 clinical samples were used for the accuracy and precision analyses. All 43 RCM-positive clinical samples tested positive by ARC. The overall concordance between the two tests was good (98%). Based on 17 samples, the inter-assay median coefficient of variation was 13%. A linearity panel ranging from approximately 1 to 7log10copies/mL was used to confirm linearity (R(2)=0.99). CMV viral load measurement was not affected by different concentrations of HSV-1 or EBV DNA. We conclude that The Abbott RealTime CMV assay offers good sensitivity, precision and linearity and is suitable for monitoring CMV viral loads in transplant recipients. Standardization with the WHO CMV standard allows for comparison with other assays.


Subject(s)
Cytomegalovirus Infections/virology , Cytomegalovirus/isolation & purification , Plasma/virology , Viral Load/methods , Humans , Sensitivity and Specificity , Transplant Recipients
12.
J Colloid Interface Sci ; 449: 494-505, 2015 Jul 01.
Article in English | MEDLINE | ID: mdl-25736430

ABSTRACT

Stability and reorganization in Langmuir films of PEO in PEO homopolymers and PPO-PEO block copolymers were investigated using film balance measurements. The apparent fractional losses of EO segments transferred into the subphase resulting from successive compression-expansion cycles have been estimated. The apparent loss is mainly Γ(max), M(n) and time-dependent. At surface concentrations Γ⩽0.32 mg/m(2), PEO films are in equilibrium. For 0.32⩽Γ⩽0.7 mg/m(2), the losses remain modest. Further compression leads to densification of the monolayer, requiring the interplay of thermodynamics and kinetic factors In the plateau regime, the loss is higher and constant for 1⩽Γ(max)⩽2 mg/m(2) upon maintaining the achieved surface area for 15 min. Similar losses were obtained for PEO homopolymers of high Mn and PPO353-PEO2295. It suggests that the PEO remains anchored in a metastable state at the air-water interface at surface concentration well above the onset of the plateau. Additional losses are incurred for PEO homopolymers for monolayers kept compressed in the plateau for 2 h. For the interpretation of these phenomena a combination of elements from self-consistent field theory and scaling is desirable with as a trend an increasing contribution of the latter with increasing surface concentration.

13.
Adv Colloid Interface Sci ; 222: 199-214, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25488283

ABSTRACT

In this paper we investigate the application of the two-dimensional Clapeyron law to polymer monolayers. This is a largely unexplored area of research. The main problems are (1) establishing if equilibrium is reached and (2) if so, identifying and defining phases as functions of the temperature. Once this is validated, the Clapeyron law allows us to obtain the entropy and enthalpy differences between two coexisting phases. In turn, this information can be used to obtain insight into the conformational properties of the films and changes therein. This approach has a wide potential for obtaining additional information on polymer adsorption at interfaces and the structure of their monolayer films. The 2D Clapeyron law was applied emphasizing polyethylene oxide (PEO) in polypropylene oxide (PPO)-PEO block copolymers, based on new well-defined data for their Langmuir films. Values for enthalpy per monomer of 0.12 and 0.23 kT were obtained for the phase transition of two different PEO chains (Neo of 2295 and 409, respectively). This enthalpy was estimated to correspond to 1.2±0.4 kT per EO monomer present in train conformation at the air/water interface.

14.
Sci Total Environ ; 500-501: 270-6, 2014 Dec 01.
Article in English | MEDLINE | ID: mdl-25226072

ABSTRACT

Characterization factors (CFs) are used in life cycle assessment (LCA) to quantify the potential impact per unit of emission. CFs are obtained from a characterization model which assess the environmental mechanisms along the cause-effect chain linking an emission to its potential damage on a given area of protection, such as loss in ecosystem quality. Up to now, CFs for acidifying emissions did not cover the global scale and were only representative of their characterization model geographical scope. Consequently, current LCA practices implicitly assume that all emissions from a global supply chain occur within the continent referring to the characterization method geographical scope. This paper provides worldwide 2°×2.5° spatially-explicit CFs, representing the change in relative loss of terrestrial vascular plant species due to an emission change of nitrogen oxides (NOx), ammonia (NH3) and sulfur dioxide (SO2). We found that spatial variability in the CFs is much larger compared to statistical uncertainty (six orders of magnitude vs. two orders of magnitude). Spatial variability is mainly caused by the atmospheric fate factor and soil sensitivity factor, while the ecological effect factor is the dominant contributor to the statistical uncertainty. The CFs provided in our study allow the worldwide spatially explicit evaluation of life cycle impacts related to acidifying emissions. This opens the door to evaluate regional life cycle emissions of different products in a global economy.


Subject(s)
Environmental Pollution/statistics & numerical data , Models, Theoretical , Air Pollutants/analysis , Ammonia/analysis , Environmental Pollution/analysis , Nitrogen Oxides/analysis , Particulate Matter/analysis , Spatial Analysis , Sulfur Dioxide/analysis , Uncertainty
15.
Sci Total Environ ; 484: 1-9, 2014 Jun 15.
Article in English | MEDLINE | ID: mdl-24686139

ABSTRACT

Functional stability (FS) is an ecosystem attribute that is increasingly promoted in soil health assessment. However, FS is currently assessed comparatively, and it is therefore impossible to generate toxicity parameters. Additionally, the FS scores in the literature do not consider site and contamination history within the score. To address these issues, three new FS scores adapted to an ecotoxicological context and based on the Relative Soil Stability Index (RSSI) method were developed. The aim of the study was then to determine the FS score(s) that best describe the toxicity of metal-contaminated field-collected soils. Twenty pairs of Zn-contaminated soils (contaminated and reference soils) were collected on the field, and their enzymatic FS (arylsulfatase, protease, phosphatase and urease) and metal fractions (total and bioavailable) were analyzed. New RSSI-based and existing FS scores were calculated for each enzyme and correlated to the Zn fractions. One of the new RSSI-based scores was well correlated with the bioavailable labile Zn concentration for the arylsulfatase, phosphatase and urease (coefficients of regression higher than 0.50). Furthermore, this FS score was not affected by the soil organic matter and depended little on other soil properties. Other FS scores were correlated to labile Zn for only one enzyme, which varied according to the score. The new RSSI-based score thus better attributed Zn toxicity to field-collected soils than other FS scores.


Subject(s)
Environmental Monitoring , Soil Microbiology , Soil Pollutants/toxicity , Zinc/toxicity , Ecosystem , Ecotoxicology , Soil/chemistry , Soil Pollutants/analysis , Urease/analysis , Zinc/analysis
16.
J Food Prot ; 77(3): 427-34, 2014 Mar.
Article in English | MEDLINE | ID: mdl-24674434

ABSTRACT

It is recognized that bacterial adhesion usually occurs on conditioning films made of organic macromolecules absorbed to abiotic surfaces. The objectives of this study were to determine the extent to which milk protein-coated polystyrene (PS) pegs interfere with biofilm formation and the synergistic effect of this conditioning and hypertonic growth media on the bacterial adhesion and biofilm formation of Listeria innocua, used as a nonpathogenic surrogate for Listeria monocytogenes. PS pegs were uncoated (bare PS) or individually coated with whey proteins isolate (WPI), ß-lactoglobulin, bovine serum albumin, or tryptic soy broth (TSB) and were incubated in bacterial suspensions in modified Welshimer's broth. After 4 h, the number of adherent cells was dependent on the coating, as follows: TSB (10(7) CFU/ml) > bare PS > ß-lactoglobulin > bovine serum albumin ∼ WPI (10(4) CFU/ml). The sessile cell counts increased up to 24 h, reaching > 10(7) CFU per peg for all surfaces (P > 0.1), except for WPI-coated PS; this indicates that the inhibitory effects of milk protein conditioning films are transient, slowing down the adhesion process. The 4-h bacterial adhesion on milk protein-coated PS in modified Welshimer's broth supplemented with salt (0 to 10% [wt/vol]) did not vary (P > 0.1), indicating that conditioning with milk proteins was the major determinant for inhibition of bacterial adhesion and that the synergetic effect of salt and milk proteins on adhesion was minimal. Moreover, the presence of 5 to 10% salt significantly inhibited 24-h biofilm formation on the TSB-coated and bare PS, with a decrease of >3 log at 10% (wt/vol) NaCl and almost completely depleted viable sessile bacteria on the milk protein-coated PS.


Subject(s)
Bacterial Adhesion/physiology , Biofilms/growth & development , Culture Media/pharmacology , Listeria/physiology , Milk Proteins/pharmacology , Colony Count, Microbial , Culture Media/chemistry , Food Microbiology , Osmolar Concentration , Polystyrenes
17.
Microb Ecol ; 66(3): 647-58, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23640274

ABSTRACT

Denaturing gradient gel electrophoresis (DGGE) has been and remains extensively used to assess and monitor the effects of various treatments on soil bacterial communities. Considering only abundant phylotypes, the diversity estimates produced by this technique have been proven to be uncorrelated to true community diversity. The aim of this paper was to develop a framework to estimate a community's true diversity from DGGE. Developed using in silico DGGE profiles generated from published pyrosequencing datasets, this framework elongates the rank-abundance distributions (RADs) drawn by band quantification using the peak-to-signal ratio (PSR) parameter, which was proven to be related to bacterial richness. The ability to compare DGGE-based diversity estimates to the true diversity of communities led to a unique opportunity to identify potential pitfalls when analyzing DGGE gels with commercial analysis software programs and gain insight into the process of DNA band clustering in the profiles. Bacterial diversity was compared through richness, Shannon, and Simpson's 1/D indices. Intermediate results demonstrated that, even though commercial gel analysis software programs were unable to produce consistent results throughout all samples, a newly developed Matlab-based framework unraveled the dominance profiles of communities from band quantification. Elongating these partial RADs using the PSRs extracted from the DGGE profiles chiefly made it possible to accurately estimate the true diversity of communities. For all the samples analyzed, the estimated Shannon and Simpson's 1/D were accurate at ±10 %. Richness estimations were less accurate, ranging from -11 to 31 % of the expected values. The framework showed great potential to study the structure and diversity of soil bacterial communities.


Subject(s)
Bacteria/isolation & purification , Biodiversity , Soil Microbiology , Bacteria/classification , Bacteria/genetics , DNA, Bacterial/genetics , Denaturing Gradient Gel Electrophoresis , Phylogeny , RNA, Ribosomal, 16S/genetics
18.
Environ Sci Technol ; 46(15): 8270-8, 2012 Aug 07.
Article in English | MEDLINE | ID: mdl-22780226

ABSTRACT

This paper presents a novel life cycle impact assessment (LCIA) approach to derive spatially explicit soil sensitivity indicators for terrestrial acidification. This global approach is compatible with a subsequent damage assessment, making it possible to consistently link the developed midpoint indicators with a later endpoint assessment along the cause-effect chain-a prerequisite in LCIA. Four different soil chemical indicators were preselected to evaluate sensitivity factors (SFs) for regional receiving environments at the global scale, namely the base cations to aluminum ratio, aluminum to calcium ratio, pH, and aluminum concentration. These chemical indicators were assessed using the PROFILE geochemical steady-state soil model and a global data set of regional soil parameters developed specifically for this study. Results showed that the most sensitive regions (i.e., where SF is maximized) are in Canada, northern Europe, the Amazon, central Africa, and East and Southeast Asia. However, the approach is not bereft of uncertainty. Indeed, a Monte Carlo analysis showed that input parameter variability may induce SF variations of up to over 6 orders of magnitude for certain chemical indicators. These findings improve current practices and enable the development of regional characterization models to assess regional life cycle inventories in a global economy.


Subject(s)
Acids/chemistry , Soil/chemistry , Aluminum/analysis , Calcium/analysis , Hydrogen-Ion Concentration , Uncertainty
19.
Integr Environ Assess Manag ; 8(4): 749-59, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22488822

ABSTRACT

The intake fraction (iF) is the fraction of an emitted mass of chemical that is ultimately taken in by an entire population, and it is used as an indicator of human health potential impacts related to environmental chemical persistence and bioaccumulation in the food chain. In chemical screening applications, the iF can be predicted using multimedia and multipathway fate and exposure models. One of the sources of iF uncertainty is the natural seasonal variability of the input parameters used in the models, i.e., the physicochemical properties of the pollutant and the landscape and exposure parameters. The objective of this article is to determine the relevance of including seasonal differentiation when assessing iFs in life cycle assessment. This was done by calculating and comparing seasonal iFs with each other and with iFs at 25° C, for both Canadian and global contexts. Two Canadian seasonal models based on the IMPACT 2002 predictive tool, and 2 models for the global context based on the USEtox consensus model were developed to calculate summer and winter iFs. Emissions into air and water and a set of 35 representative organic chemicals were considered. Partition coefficients for seasonal conditions were calculated using an integration of the van't Hoff equation. First-order degradation rate constants were calculated assuming that the rate constant doubles with each 10° C increase in temperature. For Canadian air emissions, results indicated that iFs for winter emissions could be up to 1 to 2 orders of magnitude higher than summer iFs or iFs calculated at 25° C. For Canadian water emissions, results showed that iFs for both summer and winter conditions were, in general, closer to each other with outliers within 1 order of magnitude to iFs calculated at 25° C. Results also indicated that seasonal variability was of lesser importance when assessing iFs within a global context. Because the ranking between chemicals was maintained, it can be concluded that seasonal variability is not relevant within a comparative context. However, this difference might be significant when comparing the magnitude of human toxicity impacts versus other impact categories contributing to human health damages.


Subject(s)
Environmental Exposure , Environmental Monitoring/methods , Environmental Pollutants/analysis , Canada , Environmental Pollutants/chemistry , Humans , Models, Theoretical , Seasons , Temperature
20.
Environ Sci Technol ; 45(20): 8948-57, 2011 Oct 15.
Article in English | MEDLINE | ID: mdl-21905685

ABSTRACT

Life cycle assessment (LCA) is a methodology that quantifies potential environmental impacts for comparative purposes in a decision-making context. While potential environmental impacts from pollutant emissions into water are characterized in LCA, impacts from water unavailability are not yet fully quantified. Water use can make the resource unavailable to other users by displacement or quality degradation. A reduction in water availability to human users can potentially affect human health. If financial resources are available, there can be adaptations that may, in turn, shift the environmental burdens to other life cycle stages and impact categories. This paper proposes a model to evaluate these potential impacts in an LCA context. It considers the water that is withdrawn and released, its quality and scarcity in order to evaluate the loss of functionality associated with water uses. Regionalized results are presented for impacts on human health for two modeling approaches regarding affected users, including or not domestic uses, and expressed in disability-adjusted life years (DALY). A consumption and quality based scarcity indicator is also proposed as a midpoint. An illustrative example is presented for the production of corrugated board with different effluents, demonstrating the importance of considering quality, process effluents and the difference between the modeling approaches.


Subject(s)
Environmental Health/methods , Environmental Monitoring/methods , Fresh Water/analysis , Models, Theoretical , Humans , Water Supply
SELECTION OF CITATIONS
SEARCH DETAIL
...