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2.
Elife ; 52016 06 09.
Article in English | MEDLINE | ID: mdl-27278118

ABSTRACT

Southeastern Asia is a recognised hotspot for emerging infectious diseases, many of which have an animal origin. Mammarenavirus infections contribute significantly to the human disease burden in both Africa and the Americas, but little data exists for Asia. To date only two mammarenaviruses, the widely spread lymphocytic choriomeningitis virus and the recently described Wenzhou virus have been identified in this region, but the zoonotic impact in Asia remains unknown. Here we report the presence of a novel mammarenavirus and of a genetic variant of the Wenzhou virus and provide evidence of mammarenavirus-associated human infection in Asia. The association of these viruses with widely distributed mammals of diverse species, commonly found in human dwellings and in peridomestic habitats, illustrates the potential for widespread zoonotic transmission and adds to the known aetiologies of infectious diseases for this region.


Subject(s)
Arenaviridae Infections/epidemiology , Arenaviridae Infections/virology , Arenaviridae/classification , Arenaviridae/isolation & purification , Endemic Diseases , Animals , Arenaviridae/genetics , Asia, Southeastern/epidemiology , Cluster Analysis , Humans , Lymphocytic choriomeningitis virus , Phylogeny , RNA, Viral/genetics , Sequence Analysis, DNA , Sequence Homology , Zoonoses/epidemiology , Zoonoses/virology
3.
Infect Genet Evol ; 35: 42-9, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26231720

ABSTRACT

Acute respiratory viral infections are a major cause of morbidity during early childhood in developing countries. Human rhinoviruses are the most frequent cause of upper respiratory tract infections in humans, which can range in severity from asymptomatic to clinically severe disease. In this study we collected 4170 nasopharyngeal swabs from patients hospitalised with influenza-like illness in two Cambodian provincial hospitals between 2007 and 2010. Samples were screened for 18 respiratory viruses using 5 multiplex PCRs. A total of 11.2% of samples tested positive for human rhinoviruses (HRV). VP4/2 and VP1 regions were amplified and sequenced to study the distribution of rhinoviruses genotypes and species in Cambodia during this three-year period. Five novel genotypes, 2 species A, 2 species B and 1 species C were identified based on VP1 sequences. Co-infections with other viruses were demonstrated.


Subject(s)
Genetic Variation , Picornaviridae Infections/virology , Rhinovirus/classification , Rhinovirus/isolation & purification , Cambodia , Coinfection/virology , Female , Genome, Viral , Humans , Male , Molecular Sequence Data , Multiplex Polymerase Chain Reaction/methods , Nasopharynx/virology , Phylogeny , Rhinovirus/genetics , Sequence Analysis, RNA
4.
J Infect Dis ; 209(5): 676-85, 2014 Mar 01.
Article in English | MEDLINE | ID: mdl-23911711

ABSTRACT

Since 1996, highly pathogenic avian influenza (HPAI) H5N1 virus has presented a persistent threat to public health. Its high degree of genetic diversity also poses enormous challenges in developing effective vaccines. To search for vaccine regimens that could elicit broadly neutralizing antibody responses against diverse HPAI H5N1 strains, in the present study we tested H5 hemagglutinin (HA) from an A/Thailand/1(KAN)-1/2004 strain in a heterologous prime-boost vaccination. We demonstrated that priming mice with DNA and boosting with virus-like particle induced antibody responses that cross-neutralize all reported clades and subclades of HPAI H5N1 viruses and protect mice from high lethal dose HPAI H5N1 challenge in both active and passive immunizations. Unexpectedly, cross-divergent H5 neutralizing antibodies are directed to the HA head and block both attachment and postattachment of virus entry. Thus, we conclude that as a promising pan-H5 vaccine candidate this prime-boost regimen could be further developed in ferrets and in humans.


Subject(s)
Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , DNA, Viral/genetics , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Influenza A Virus, H5N1 Subtype/genetics , Influenza A Virus, H5N1 Subtype/immunology , Vaccines, Virus-Like Particle/immunology , Animals , Antibodies, Neutralizing/genetics , CD8-Positive T-Lymphocytes/immunology , DNA, Viral/immunology , Female , Influenza Vaccines/immunology , Mice , Mice, Inbred BALB C , Orthomyxoviridae Infections/genetics , Orthomyxoviridae Infections/immunology , Orthomyxoviridae Infections/virology , Vaccination/methods
5.
Malar J ; 12: 405, 2013 Nov 09.
Article in English | MEDLINE | ID: mdl-24206649

ABSTRACT

BACKGROUND: To achieve the goal of malaria elimination in low transmission areas such as in Cambodia, new, inexpensive, high-throughput diagnostic tools for identifying very low parasite densities in asymptomatic carriers are required. This will enable a switch from passive to active malaria case detection in the field. METHODS: DNA extraction and real-time PCR assays were implemented in an "in-house" designed mobile laboratory allowing implementation of a robust, sensitive and rapid malaria diagnostic strategy in the field. This tool was employed in a survey organized in the context of the MalaResT project (NCT01663831). RESULTS: The real-time PCR screening and species identification assays were performed in the mobile laboratory between October and November 2012, in Rattanakiri Province, to screen approximately 5,000 individuals in less than four weeks and treat parasite carriers within 24-48 hours after sample collection. An average of 240 clinical samples (and 40 quality control samples) was tested every day, six/seven days per week. Some 97.7% of the results were available <24 hours after the collection. A total of 4.9% were positive for malaria. Plasmodium vivax was present in 61.1% of the positive samples, Plasmodium falciparum in 45.9%, Plasmodium malariae in 7.0% and Plasmodium ovale in 2.0%. CONCLUSIONS: The operational success of this diagnostic set-up proved that molecular testing and subsequent treatment is logistically achievable in field settings. This will allow the detection of clusters of asymptomatic carriers and to provide useful epidemiological information. Fast results will be of great help for staff in the field to track and treat asymptomatic parasitaemic cases. The concept of the mobile laboratory could be extended to other countries for the molecular detection of malaria or other pathogens, or to culture vivax parasites, which does not support long-time delay between sample collection and culture.


Subject(s)
Carrier State/diagnosis , Malaria/diagnosis , Molecular Diagnostic Techniques/methods , Parasitology/methods , Plasmodium/classification , Plasmodium/isolation & purification , Real-Time Polymerase Chain Reaction/methods , Asymptomatic Infections , Cambodia/epidemiology , Carrier State/parasitology , Cross-Sectional Studies , Humans , Malaria/epidemiology , Malaria/parasitology , Mass Screening/methods , Molecular Epidemiology/methods , Plasmodium/genetics , Sensitivity and Specificity , Time Factors
6.
Infect Genet Evol ; 15: 77-86, 2013 Apr.
Article in English | MEDLINE | ID: mdl-22677620

ABSTRACT

The Dengue National Control Program was established in Cambodia in 2000 and has reported between 10,000 and 40,000 dengue cases per year with a case fatality rate ranging from 0.7 to 1.7. In this study 39 DENV-2 and 57 DENV-3 viruses isolated from patients between 2000 and 2008 were fully sequenced. Five DENV2 and four DENV3 distinct lineages with different dynamics were identified. Each lineage was characterized by the presence of specific mutations with no evidence of recombination. In both DENV-2 and DENV-3 the lineages present prior to 2003 were replaced after that date by unrelated lineages. After 2003, DENV-2 lineages D2-3 and D2-4 cocirculated until 2007 when they were almost completely replaced by a lineage D2-5 which emerged from D2-3 Conversely, all DENV-3 lineages remained, diversified and cocirculated with novel lineages emerging. Years 2006 and 2007 were marked by a high prevalence of DENV-3 and 2007 with a large dengue outbreak and a high proportion of patients with severe disease. Selective sweeps in DENV-1 and DENV-2 were linked to immunological escape to a predominately DENV-3-driven immunological response. The complex dynamic of dengue in Cambodia in the last ten years has been associated with a combination of stochastic climatic events, cocirculation, coevolution, adaptation to different vector populations, and with the human population immunological landscape.


Subject(s)
Climate , Dengue Virus/classification , Dengue/epidemiology , Disasters , Adolescent , Adult , Aged , Amino Acid Sequence , Base Sequence , Cambodia/epidemiology , Child , Child, Preschool , Dengue Virus/genetics , Genes, Viral , Genome, Viral , Humans , Infant , Middle Aged , Molecular Sequence Data , Mutation , Open Reading Frames , Phylogeny , Polymorphism, Genetic , Selection, Genetic , Serotyping , Young Adult
7.
Infect Genet Evol ; 15: 87-94, 2013 Apr.
Article in English | MEDLINE | ID: mdl-22683363

ABSTRACT

In Cambodia, the first detection of HPAI H5N1 virus in birds occurred in January 2004 and since then there have been 33 outbreaks in poultry while 21 human cases were reported. The origin and dynamics of these epizootics in Cambodia remain unclear. In this work we used a range of bioinformatics methods to analyze the Cambodian virus sequences together with those from neighboring countries. Six HA lineages belonging to clades 1 and 1.1 were identified since 2004. Lineage 1 shares an ancestor with viruses from Thailand and disappeared after 2005, to be replaced by lineage 2 originating from Vietnam and then by lineage 3. The highly adapted lineage 4 was seen only in Cambodia. Lineage 5 is circulating both in Vietnam and Cambodia since 2008 and was probably introduced in Cambodia through unregistered transboundary poultry trade. Lineage 6 is endemic to Cambodia since 2010 and could be classified as a new clade according to WHO/OIE/FAO criteria for H5N1 virus nomenclature. We propose to name it clade 1.1A. There is a direct filiation of lineages 2 to 6 with a temporal evolution and geographic differentiation for lineages 4 and 6. By the end of 2011, two lineages, i.e. lineages 5 and 6, with different transmission paths cocirculate in Cambodia. The presence of lineage 6 only in Cambodia suggests the existence of a transmission specific to this country whereas the presence of lineage 5 in both Cambodia and Vietnam indicates a distinct way of circulation of infected poultry.


Subject(s)
Influenza A Virus, H5N1 Subtype/classification , Influenza in Birds/epidemiology , Animals , Cambodia/epidemiology , Cell Line , Chick Embryo , Disease Outbreaks , Evolution, Molecular , Genes, Viral , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Influenza A Virus, H5N1 Subtype/genetics , Molecular Sequence Data , Mutation , Phylogeny , Polymorphism, Genetic , Poultry/virology , Selection, Genetic , Sequence Homology, Amino Acid
8.
Infect Genet Evol ; 15: 43-52, 2013 Apr.
Article in English | MEDLINE | ID: mdl-21292032

ABSTRACT

First identified in 2001, human metapneumovirus (HMPV) is a novel pathogen and causative agent of acute respiratory tract infection. Re-infection with HMPV is common, and currently there is no available vaccine against HMPV infection. Two genotypes of HMPV have been identified, A and B, both of which can be divided further into at least two distinct sub-genotypes. Here we report the results of the first study to investigate the genetic variability of HMPV strains circulating within Cambodia. The overall incidence of HMPV infection amongst an all-ages population of patients hospitalised with ALRI in Cambodia during 3 consecutive years, between 2007 and 2009, was 1.7%. The incidence of HMPV infection was highest amongst children less than 5 years of age, with pneumonia or bronchopneumonia the most frequent clinical diagnoses across all age groups. The incidence of HMPV infection varied annually. As anticipated, genetic diversity was low amongst the conserved F gene sequences but very high amongst G gene sequences, some strains sharing as little as 56.3% and 34.2% homology at the nucleotide and amino acid levels, respectively. Simultaneous co-circulation of strains belonging to the HMPV sub-genotypes B1, B2 and lineage A2b, amongst patients recruited at 2 geographically distinct provincial hospitals, was detected. Sub-genotype B2 strains were responsible for the majority of the infections detected, and a significant (p=0.013) association between infection with lineage A2b strains and disease severity was observed.


Subject(s)
Genetic Variation , Metapneumovirus/genetics , Paramyxoviridae Infections/epidemiology , Adolescent , Adult , Aged , Cambodia/epidemiology , Child , Child, Preschool , Female , Genes, Viral , History, 21st Century , Humans , Infant , Infant, Newborn , Male , Metapneumovirus/classification , Middle Aged , Molecular Sequence Data , Paramyxoviridae Infections/history , Phylogeny , Population Surveillance , RNA, Viral/genetics , Seasons , Sequence Analysis, DNA , Young Adult
9.
Influenza Other Respir Viruses ; 7(2): 201-10, 2013 Mar.
Article in English | MEDLINE | ID: mdl-22531100

ABSTRACT

BACKGROUND: Human bocavirus (HBoV) is a novel parvovirus that is associated with respiratory and gastrointestinal tract disease. OBJECTIVES: To investigate the prevalence and genetic diversity of HBoV amongst hospitalized patients with acute lower respiratory infection (ALRI) in Cambodia. STUDY DESIGN: Samples were collected from 2773 patients of all ages hospitalised with symptoms of ALRI between 2007 and 2009. All samples were screened by multiplex RT-PCR/PCR for 18 respiratory viruses. All samples positive for HBoV were sequenced and included in this study. RESULTS: Of the samples tested, 43 (1·5%) were positive for HBoV. The incidence of HBoV did not vary between the consecutive seasons investigated, and HBoV infections were detected year-round. The incidence of HBoV infection was highest in patients aged < 2 years, with pneumonia or bronchopneumonia the most common clinical diagnosis, regardless of age. A total of 19 patients (44%) were co-infected with HBoV and an additional respiratory pathogen. All isolates were classified as HBoV type 1 (HBoV-1). High conservation between Cambodian NP1 and V1V2 gene sequences was observed. CONCLUSIONS: Human bocavirus infection can result in serious illness, however is frequently detected in the context of viral co-infection. Specific studies are required to further understand the true pathogenesis of HBoV in the context of severe respiratory illness.


Subject(s)
Human bocavirus/isolation & purification , Parvoviridae Infections/epidemiology , Respiratory Tract Infections/epidemiology , Adolescent , Adult , Cambodia/epidemiology , Child , Child, Preschool , Cluster Analysis , DNA, Viral/chemistry , DNA, Viral/genetics , Female , Genetic Variation , Genotype , Hospitalization , Human bocavirus/classification , Human bocavirus/genetics , Humans , Infant , Male , Middle Aged , Molecular Sequence Data , Parvoviridae Infections/virology , Prevalence , Respiratory Tract Infections/virology , Sequence Analysis, DNA , Young Adult
10.
Infect Genet Evol ; 15: 59-68, 2013 Apr.
Article in English | MEDLINE | ID: mdl-21757030

ABSTRACT

In Cambodia, dengue virus (DENV) was first isolated in 1963 and has become endemic with peak epidemic during raining season. Since 2000, the Dengue National Control Program has reported from 10,000 to 40,000 cases per year with fatality rates ranging from 0.7 to 1.7. All four dengue serotypes are found circulating in Cambodia with alternative predominance of serotypes DENV-2 and DENV-3. The DENV-1 represents from 5% to 20% of all circulating viruses, depending upon the year. In this work, 79 clinical strains of DENV-1 were isolated between 2000 and 2009 and their genome fully sequenced. Four distinct lineages with different dynamics were identified. The main evolutionary drive was negative selective pressure but each lineage was characterized by the presence of specific mutations acquired through evolution. Coexistence, extinction and replacement of lineages occurred over the 10-year period. Lineages 1, 2 and 3 were all detected since 2000-2002 and disappeared in 2003, 2004-2005 and 2007, respectively. Lineages 1 and 2 displayed different dynamics. Lineage 1 was very diverse whereas lineage 2 was very homogeneous. Lineage 4 which derived from lineage 3 in 2003 remained the only one at the end of the sampling period in 2008-2009 owing to a selective sweep. The lineages dynamic of DENV-1 viruses and consequences for molecular epidemiology are discussed.


Subject(s)
Dengue Virus/classification , Dengue Virus/genetics , Dengue/epidemiology , Genetic Variation , Adolescent , Adult , Cambodia/epidemiology , Child , Child, Preschool , Evolution, Molecular , Genes, Viral , Genome, Viral , Humans , Infant , Molecular Sequence Data , Open Reading Frames , Phylogeny , Polymorphism, Genetic , Quantitative Trait, Heritable , RNA, Viral/genetics , Selection, Genetic , Young Adult
11.
Emerg Infect Dis ; 18(12): 2066-9, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23171736

ABSTRACT

Chikungunya virus (CHIKV), probably Asian genotype, was first detected in Cambodia in 1961. Despite no evidence of acute or recent CHIKV infections since 2000, real-time reverse transcription PCR of serum collected in 2011 detected CHIKV, East Central South African genotype. Spatiotemporal patterns and phylogenetic clustering indicate that the virus probably originated in Thailand.


Subject(s)
Alphavirus Infections/epidemiology , Chikungunya virus/genetics , Communicable Diseases, Emerging/epidemiology , Disease Outbreaks , Adolescent , Adult , Antibodies, Viral/blood , Antibodies, Viral/immunology , Cambodia/epidemiology , Chikungunya virus/classification , Chikungunya virus/immunology , Child , Child, Preschool , Female , Humans , Immunoglobulin M/blood , Immunoglobulin M/immunology , Male , Middle Aged , Phylogeny , Public Health Surveillance , RNA, Viral , Viral Proteins/genetics , Young Adult
12.
Virol J ; 9: 135, 2012 Jul 24.
Article in English | MEDLINE | ID: mdl-22828206

ABSTRACT

BACKGROUND: Japanese encephalitis virus (JEV) is a major mosquito-borne pathogen that causes viral encephalitis throughout Asia. Vaccination with an inactive JEV particle or attenuated virus is an efficient preventative measure for controlling infection. Flavivirus NS1 protein is a glycoprotein secreted during viral replication that plays multiple roles in the viral life cycle and pathogenesis. Utilizing JEV NS1 as an antigen in viral vectors induces a limited protective immune response against infection. Previous studies using E. coli-expressed JEV NS1 to immunize mice induced protection against lethal challenge; however, the protection mechanism through cellular and humoral immune responses was not described. RESULTS: JEV NS1 was expressed in and purified from Drosophila S2 cells in a native glycosylated multimeric form, which induced T-cell and antibody responses in immunized C3H/HeN mice. Mice vaccinated with 1 µg NS1 with or without water-in-oil adjuvant were partially protected against viral challenge and higher protection was observed in mice with higher antibody titers. IgG1 was preferentially elicited by an adjuvanted NS1 protein, whereas a larger load of IFN-γ was produced in splenocytes from mice immunized with aqueous NS1. Mice that passively received anti-NS1 mouse polyclonal immune sera were protected, and this phenomenon was dose-dependent, whereas protection was low or delayed after the passive transfer of anti-NS1 MAbs. CONCLUSION: The purified NS1 subunit induced protective immunity in relation with anti-NS1 IgG1 antibodies. NS1 protein efficiently stimulated Th1-cell proliferation and IFN-γ production. Protection against lethal challenge was elicited by passive transfer of anti-NS1 antisera, suggesting that anti-NS1 antibodies play a substantial role in anti-viral immunity.


Subject(s)
Antibodies, Viral/blood , Encephalitis Virus, Japanese/immunology , Encephalitis, Japanese/prevention & control , Japanese Encephalitis Vaccines/immunology , Viral Nonstructural Proteins/immunology , Adjuvants, Immunologic/administration & dosage , Animals , Antibodies, Viral/immunology , Cell Line , Disease Models, Animal , Drosophila , Encephalitis, Japanese/immunology , Female , Immunization, Passive , Immunoglobulin G/blood , Immunoglobulin G/immunology , Interferon-gamma/metabolism , Japanese Encephalitis Vaccines/administration & dosage , Leukocytes, Mononuclear/immunology , Mice , Mice, Inbred C3H , Spleen/immunology , Vaccines, Synthetic/administration & dosage , Vaccines, Synthetic/immunology
13.
Virol J ; 9: 106, 2012 Jun 08.
Article in English | MEDLINE | ID: mdl-22681768

ABSTRACT

BACKGROUND: Although gene exchange is not likely to occur freely, reassortment between the H5N1 highly pathogenic avian influenza virus (HPAIV) and currently circulating human viruses is a serious concern. The PA polymerase subunit of H5N1 HPAIV was recently reported to activate the influenza replicon activity. METHODS: The replicon activities of PR8 and WSN strains (H1N1) of influenza containing PA from HPAIV A/Cambodia/P0322095/2005 (H5N1) and the activity of the chimeric RNA polymerase were analyzed. A reassortant WSN virus containing the H5N1 Cambodia PA (C-PA) was then reconstituted and its growth in cells and pathogenicity in mice examined. The interferon promoter, TUNEL, and caspase 3, 8, and 9 activities of C-PA-infected cells were compared with those of WSN-infected cells. RESULTS: The activity of the chimeric RNA polymerase was slightly higher than that of WSN, and C-PA replicated better than WSN in cells. However, the multi-step growth of C-PA and its pathogenicity in mice were lower than those of WSN. The interferon promoter, TUNEL, and caspase 3, 8, and 9 activities were strongly induced in early infection in C-PA-infected cells but not in WSN-infected cells. CONCLUSIONS: Apoptosis and interferon were strongly induced early in C-PA infection, which protected the uninfected cells from expansion of viral infection. In this case, these classical host-virus interactions contributed to the attenuation of this strongly replicating virus.


Subject(s)
Apoptosis , Influenza A Virus, H5N1 Subtype/enzymology , Influenza A Virus, H5N1 Subtype/physiology , Interferons/biosynthesis , Transcription, Genetic , Virus Replication , Animals , Cell Line , Female , Humans , Influenza A Virus, H1N1 Subtype/enzymology , Influenza A Virus, H1N1 Subtype/immunology , Influenza A Virus, H1N1 Subtype/pathogenicity , Influenza A Virus, H1N1 Subtype/physiology , Influenza A Virus, H5N1 Subtype/immunology , Influenza A Virus, H5N1 Subtype/pathogenicity , Mice , Mice, Inbred BALB C , Orthomyxoviridae Infections/pathology , Orthomyxoviridae Infections/virology , RNA-Dependent RNA Polymerase , Reassortant Viruses/enzymology , Reassortant Viruses/immunology , Reassortant Viruses/pathogenicity , Reassortant Viruses/physiology , Survival Analysis , Viral Load , Viral Proteins
14.
Microbes Infect ; 14(11): 930-40, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22504173

ABSTRACT

Japanese encephalitis virus (JEV) is a flavivirus with a complex life cycle involving mosquito vectors that mainly target birds and pigs, and causes severe encephalitis in children in Asia. Neurotropic flaviviruses of the JEV serogroup have a particular characteristic of expressing a unique nonstructural NS1' protein, which is a prolongation of NS1 at the C terminus by 52 amino acids derived from a pseudoknot-driven-1 translation frameshift. Protein NS1' is associated with virus neuro-invasiveness. In this study, the need of the pseudoknot structure for NS1' synthesis was confirmed. By using a specific antibody against the prolonged peptide, NS1' was found to be absent from the JEV SA14-14-2 vaccine strain, resulting from a single nucleotide silent mutation in the pseudoknot. A partial cleavage of NS1' at a specific site of its C-terminal appendix recognized by caspases and inhibited by caspase inhibitors suggests a unique feature of intracellular NS1'.


Subject(s)
Caspases/metabolism , Encephalitis Virus, Japanese/metabolism , Encephalitis, Japanese/metabolism , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/metabolism , Animals , Apoptosis/physiology , Caspase Inhibitors/pharmacology , Cell Line , Cricetinae , Encephalitis Virus, Japanese/genetics , Encephalitis Virus, Japanese/immunology , Encephalitis, Japanese/virology , Mice , Mutation , Protein Structure, Secondary , Viral Nonstructural Proteins/genetics , Viral Vaccines/immunology , Virus Replication/drug effects
15.
J Virol ; 86(12): 6970-8, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22496212

ABSTRACT

Because of their rapid evolution, genetic diversity, broad host range, ongoing circulation in birds, and potential human-to-human transmission, H5N1 influenza viruses remain a major global health concern. Their high degree of genetic diversity also poses enormous burdens and uncertainties in developing effective vaccines. To overcome this, we took a new approach, i.e., the development of immunogens based on a comprehensive serologic study. We constructed DNA plasmids encoding codon-optimized hemagglutinin (HA) from 17 representative strains covering all reported clades and subclades of highly pathogenic avian influenza H5N1 viruses. Using DNA plasmids, we generated the corresponding H5N1 pseudotypes and immune sera. We performed an across-the-board pseudotype-based neutralization assay and determined antigenic clusters by cartography. We then designed a triclade DNA vaccine and evaluated its immunogenicity and protection in mice. We report here that (sub)clades 0, 1, 3, 4, 5, 6, 7.1, and 9 were grouped into antigenic cluster 1, (sub)clades 2.1.3.2, 2.3.4, 2.4, 2.5, and 8 were grouped into another antigenic cluster, with subclade 2.2.1 loosely connected to it, and each of subclades 2.3.2.1 and 7.2 was by itself. Importantly, the triclade DNA vaccine encoding HAs of (sub)clades 0, 2.3.2.1, and 7.2 elicited broadly neutralizing antibody responses against all H5 clades and subclades and protected mice against high-lethal-dose heterologous H5N1 challenge. Thus, we conclude that broadly neutralizing antibodies against all H5 clades and subclades can indeed be elicited with immunogens on the basis of a comprehensive serologic study. Further evaluation and optimization of such an approach in ferrets and in humans is warranted.


Subject(s)
Antibodies, Neutralizing/immunology , Influenza A Virus, H5N1 Subtype/immunology , Influenza Vaccines/immunology , Influenza in Birds/prevention & control , Influenza, Human/prevention & control , Vaccines, DNA/immunology , Animals , Cell Line , Chickens , Cross Reactions , Drug Design , Female , Ferrets , Hemagglutinin Glycoproteins, Influenza Virus/administration & dosage , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Humans , Influenza A Virus, H5N1 Subtype/classification , Influenza A Virus, H5N1 Subtype/genetics , Influenza A Virus, H5N1 Subtype/pathogenicity , Influenza Vaccines/administration & dosage , Influenza Vaccines/genetics , Influenza in Birds/immunology , Influenza in Birds/virology , Influenza, Human/immunology , Influenza, Human/virology , Mice , Mice, Inbred BALB C , Vaccines, DNA/administration & dosage , Vaccines, DNA/genetics
16.
Biochim Biophys Acta ; 1819(5): 411-8, 2012 May.
Article in English | MEDLINE | ID: mdl-22285573

ABSTRACT

Japanese encephalitis virus (JEV) NS5 consists of an N-terminal guanylyltransferase/methyltransferase (MTase) domain and a C-terminal RNA-dependent RNA polymerase (RdRp) domain. We purified JEV NS5 from bacteria and examined its RdRp activity in vitro. It showed exclusive specificity for Mn(2+) and alkaline conditions (pH 8-10) for RdRp activity. It showed strong RdRp activity with dinucleotide primers, and the order of template strength was poly(U)>(I)>(A)>(C). It showed weak transcription activity without primers, but could not transcribe poly(I) without primers. It bound homopolymeric RNA templates, but weakly bound poly(C). The Km (µM) values were 22.13±1.11 (ATP), 21.94±3.88 (CTP), 21.27±1.23 (GTP), and 9.91±0.30 (UTP), indicating low substrate affinity. Vmax (/min) values were 0.216±0.017 (ATP), 0.781±0.020 (CTP), 0.597±0.049 (GTP), and 0.347±0.022 (UTP), indicating high polymerization activity. The RdRp domain alone did not show RdRp activity; a structural and functional interaction between the MTase and RdRp domains via 299-EHPYRTWTYH-308 (MTase domain) and 739-LIGRARISPG-748 (RdRp domain) was predicted, because mutations in the MTase domain affected RdRp activity.


Subject(s)
Encephalitis Virus, Japanese/enzymology , Methyltransferases , RNA-Dependent RNA Polymerase , Viral Nonstructural Proteins , Hydrogen-Ion Concentration , Kinetics , Methyltransferases/chemistry , Methyltransferases/metabolism , Protein Structure, Tertiary , RNA-Dependent RNA Polymerase/chemistry , RNA-Dependent RNA Polymerase/metabolism , Viral Nonstructural Proteins/chemistry , Viral Nonstructural Proteins/metabolism
17.
J Virol ; 86(6): 2978-89, 2012 Mar.
Article in English | MEDLINE | ID: mdl-22238297

ABSTRACT

Influenza A virus infection is a persistent threat to public health worldwide due to its ability to evade immune surveillance through rapid genetic drift and shift. Current vaccines against influenza A virus provide immunity to viral isolates that are similar to vaccine strains. High-affinity neutralizing antibodies against conserved epitopes could provide immunity to diverse influenza virus strains and protection against future pandemic viruses. In this study, by using a highly sensitive H5N1 pseudotype-based neutralization assay to screen human monoclonal antibodies produced by memory B cells from an H5N1-infected individual and molecular cloning techniques, we developed three fully human monoclonal antibodies. Among them, antibody 65C6 exhibited potent neutralization activity against all H5 clades and subclades except for subclade 7.2 and prophylactic and therapeutic efficacy against highly pathogenic avian influenza H5N1 viruses in mice. Studies on hemagglutinin (HA)-antibody complexes by electron microscopy and epitope mapping indicate that antibody 65C6 binds to a conformational epitope comprising amino acid residues at positions 118, 121, 161, 164, and 167 (according to mature H5 numbering) on the tip of the membrane-distal globular domain of HA. Thus, we conclude that antibody 65C6 recognizes a neutralization epitope in the globular head of HA that is conserved among almost all divergent H5N1 influenza stains.


Subject(s)
Antibodies, Neutralizing/immunology , Antibodies, Viral/immunology , Epitopes/immunology , Hemagglutinin Glycoproteins, Influenza Virus/immunology , Influenza A Virus, H5N1 Subtype/immunology , Influenza, Human/immunology , Amino Acid Sequence , Animals , Conserved Sequence , Epitope Mapping , Epitopes/chemistry , Epitopes/genetics , Female , Hemagglutinin Glycoproteins, Influenza Virus/chemistry , Hemagglutinin Glycoproteins, Influenza Virus/genetics , Humans , Influenza A Virus, H5N1 Subtype/chemistry , Influenza A Virus, H5N1 Subtype/genetics , Influenza A virus/chemistry , Influenza A virus/genetics , Influenza A virus/immunology , Influenza, Human/virology , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Neutralization Tests
18.
PLoS One ; 6(9): e24744, 2011.
Article in English | MEDLINE | ID: mdl-21949747

ABSTRACT

BACKGROUND: Japanese encephalitis virus (JEV) is a mosquito-borne flavivirus that causes public health problems in Asian countries. Only a limited number of JEV-infected individuals show symptoms and develop severe encephalitis, indicating host-dependent susceptibilities. METHODOLOGY/PRINCIPAL FINDINGS: C3H/HeN and DBA/2 mice, which exhibit different mortalities when infected by intraperitoneal inoculation with JEV, were used as experimental models to compare viral pathogenesis and host responses. One hundred infectious virus particles killed 95% of C3H/HeN mice whereas only 40% of DBA/2 mice died. JEV RNA was detected with similar low levels in peripheral lymphoid organs and in the sera of both mouse strains. High levels of viral and cytokine RNA were observed simultaneously in the brains of C3H/HeN and DBA/2 mice starting on days 6 and 9 post-infection, respectively. The kinetics of the cytokines in sera correlated with the viral replication in the brain. Significantly earlier and higher titers of neutralizing antibodies were detected in the DBA/2 strain. Primary embryonic fibroblasts, bone marrow-derived dendritic cells and macrophages from the two mouse strains were cultured. Fibroblasts displayed similar JEV replication abilities, whereas DBA/2-derived myeloid antigen-presenting cells had lower viral infectivity and production compared to the C3H/HeN-derived cells. CONCLUSIONS/SIGNIFICANCE: Mice with different susceptibilities to JEV neuroinvasion did not show changes in viral tropism and host innate immune responses prior to viral entry into the central nervous system. However, early and high neutralizing antibody responses may be crucial for preventing viral neuroinvasion and host fatality. In addition, low permissiveness of myeloid dendritic cells and macrophages to JEV infection in vitro may be elements associated with late and decreased mouse neuroinvasion.


Subject(s)
Antibodies, Neutralizing/immunology , Antibody Formation/immunology , Disease Susceptibility , Encephalitis Virus, Japanese/pathogenicity , Encephalitis, Japanese/immunology , Encephalitis, Japanese/virology , Myeloid Cells/virology , Animals , Biomarkers/metabolism , Brain/immunology , Brain/pathology , Brain/virology , Cell Line , Cells, Cultured , Chemokines/blood , Encephalitis Virus, Japanese/immunology , Encephalitis Virus, Japanese/physiology , Encephalitis, Japanese/blood , Encephalitis, Japanese/complications , Female , Fibroblasts/virology , Gene Expression Regulation , Immunohistochemistry , Inflammation/complications , Inflammation/genetics , Inflammation/pathology , Mice , Myeloid Cells/pathology , Organ Specificity , RNA, Messenger/genetics , RNA, Messenger/metabolism , Species Specificity , Time Factors , Viral Load/immunology , Virus Replication
19.
Acta Trop ; 120(1-2): 146-50, 2011.
Article in English | MEDLINE | ID: mdl-21803019

ABSTRACT

Although Cambodia, a Southeast Asian country, is suspected to be highly endemic for Japanese encephalitis virus (JEV), there are no nationally representative data on JEV transmission. Most of the existing data on human disease comes from few sentinel hospitals, and there have been no previous studies or surveillance for JEV transmission among pigs--the amplifying hosts in the natural cycle of JEV transmission. In preparation to develop a nationwide vaccination policy, data are required to show transmission of JEV in all the geographical regions of Cambodia. Analysis of JEV transmission among pigs will provide additional data on geographical scope and intensity of JEV transmission in Cambodia and will help to inform human vaccination policies in Cambodia. In this study, 505 sera obtained from swine bred in familial settings from 8 different provinces in Cambodia were tested by hemagglutination inhibition (HI) and ELISA tests to assess the presence of an immunological response to a JEV infection. Three hundred and thirty two sera (65.7%) were tested positives by HI assay and 321 (63.5%) by ELISA. Our results indicate that pigs particularly older than 6 months (95.2%) were highly infected with JEV in the 8 provinces. The high prevalence of HI antibodies and the high HI titer (>160 in 65.2% of cases and ≥ 1280 in 24.6% of cases) found in this age group suggest the important role of pigs in the transmission cycle of JEV in nature as they become probably rapidly infected and repeatedly re-exposed to the virus. Since the current pig rearing practices (within the backyard of home) are the same all over Cambodia, the results suggest that the human disease is also likely to be highly prevalent in the other provinces and warrant comprehensive policies for human vaccination and strengthened surveillance for acute meningo-encephalitis.


Subject(s)
Antibodies, Viral/blood , Encephalitis Virus, Japanese/immunology , Encephalitis, Japanese , Immunoglobulin G/blood , Swine Diseases/virology , Animals , Cambodia/epidemiology , Encephalitis, Japanese/epidemiology , Encephalitis, Japanese/transmission , Encephalitis, Japanese/veterinary , Encephalitis, Japanese/virology , Enzyme-Linked Immunosorbent Assay , Hemagglutination Inhibition Tests , Humans , Seroepidemiologic Studies , Swine , Swine Diseases/epidemiology , Vaccination/trends
20.
J Clin Microbiol ; 49(10): 3504-13, 2011 Oct.
Article in English | MEDLINE | ID: mdl-21865418

ABSTRACT

Human respiratory syncytial virus (HRSV) is the leading cause of hospitalization of children aged <5 years due to respiratory illness in industrialized countries, and pneumonia is the leading cause of mortality among children aged <5 years worldwide. Although HRSV was first identified in 1956, a preventative vaccine has yet to be developed. Here we report the results of the first study to investigate the circulation and genetic diversity of HRSV in Cambodia among an all-ages population over 5 consecutive years. The incidences of HRSV infection among all-ages outpatient and hospitalized populations were equivalent, at 9.5% and 8.2%, respectively. Infection was most prevalent among children aged <5 years, with bronchiolitis being the most frequently observed clinical syndrome in the same age group. Circulation of HRSV was seasonal, typically coinciding with the rainy season between July and November annually. Strains belonging to HRSV groups A and B were detected with equivalent frequencies; however, we observed a potentially biennial shift in the predominant circulating HRSV genotype. The majority of HRSV group B strains belonged to the recently described BA genotype, with the exception of 10 strains classified as belonging to a novel HRSV group B genotype, SAB4, first reported here.


Subject(s)
Genetic Variation , Respiratory Syncytial Virus Infections/epidemiology , Respiratory Syncytial Virus Infections/virology , Respiratory Syncytial Virus, Human/classification , Respiratory Syncytial Virus, Human/genetics , Adolescent , Adult , Age Factors , Aged , Aged, 80 and over , Cambodia/epidemiology , Child , Child, Preschool , Cluster Analysis , Female , Genotype , Humans , Infant , Infant, Newborn , Male , Middle Aged , Molecular Epidemiology , Molecular Sequence Data , Phylogeny , RNA, Viral/genetics , Respiratory Syncytial Virus, Human/isolation & purification , Seasons , Sequence Analysis, DNA , Young Adult
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