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1.
Biomolecules ; 13(10)2023 09 28.
Article in English | MEDLINE | ID: mdl-37892145

ABSTRACT

Retinal neurons that form ribbon-style synapses operate over a wide dynamic range, continuously relaying visual information to their downstream targets. The remarkable signaling abilities of these neurons are supported by specialized presynaptic machinery, one component of which is syntaxin3B. Syntaxin3B is an essential t-SNARE protein of photoreceptors and bipolar cells that is required for neurotransmitter release. It has a light-regulated phosphorylation site in its N-terminal domain at T14 that has been proposed to modulate membrane fusion. However, a direct test of the latter has been lacking. Using a well-controlled in vitro fusion assay, we found that a phosphomimetic T14 syntaxin3B mutation leads to a small but significant enhancement of SNARE-mediated membrane fusion following the formation of the t-SNARE complex. While the addition of Munc18a had only a minimal effect on membrane fusion mediated by SNARE complexes containing wild-type syntaxin3B, a more significant enhancement was observed in the presence of Munc18a when the SNARE complexes contained a syntaxin3B T14 phosphomimetic mutant. Finally, we showed that the retinal-specific complexins (Cpx III and Cpx IV) inhibited membrane fusion mediated by syntaxin3B-containing SNARE complexes in a dose-dependent manner. Collectively, our results establish that membrane fusion mediated by syntaxin3B-containing SNARE complexes is regulated by the T14 residue of syntaxin3B, Munc18a, and Cpxs III and IV.


Subject(s)
Membrane Fusion , Synapses , Membrane Fusion/physiology , Synapses/metabolism , Synaptic Transmission/genetics , Retina/metabolism , SNARE Proteins/genetics , SNARE Proteins/metabolism , Protein Binding
2.
Langmuir ; 38(34): 10704-10715, 2022 08 30.
Article in English | MEDLINE | ID: mdl-35970517

ABSTRACT

Although in recent times nanoparticles (NPs) are being used in various biological applications, their mechanism of binding interactions still remains hazy. Usually, the binding mechanism is perceived to be mediated through either the protein corona (PC) or protein complex (PCx). Herein, we report that the nanoparticle (NP)-protein interaction can also proceed via a different pathway without forming the commonly observed PC or PCx. In the present study, the NP-protein interaction between less-toxic zinc-silver-indium-sulfide (ZAIS) quantum dots (QDs) and bovine serum albumin (BSA) was investigated by employing spectroscopic and microscopic techniques. Although the analyses of data obtained from fluorescence and thermodynamic studies do indicate the binding between QDs and BSA, they do not provide clear experimental evidence in favor of PC or PCx. Quite interestingly, high-resolution transmission electron microscopy (HRTEM) studies have shown the formation of a new type of species where BSA protein molecules are adsorbed onto some portion of a QD surface rather than the entire surface. To the best of our knowledge, we believe that this is the first direct experimental evidence in favor of a model-free pathway for NP-protein interaction events. Thus, the outcome of the present study, through experimental evidence, clearly suggests that NP-protein interaction can proceed by following a pathway that is different from classical PC and PCx.


Subject(s)
Protein Corona , Quantum Dots , Protein Corona/chemistry , Quantum Dots/chemistry , Serum Albumin, Bovine/chemistry , Silver/chemistry , Spectrometry, Fluorescence/methods
3.
Elife ; 102021 03 04.
Article in English | MEDLINE | ID: mdl-33661098

ABSTRACT

Dynamins are targeted to specific cellular membranes that they remodel via membrane fusion or fission. The molecular basis of conferring specificity to dynamins for their target membrane selection is not known. Here, we report a mechanism of nuclear membrane recruitment of Drp6, a dynamin member in Tetrahymena thermophila. Recruitment of Drp6 depends on a domain that binds to cardiolipin (CL)-rich bilayers. Consistent with this, nuclear localization of Drp6 was inhibited either by depleting cellular CL or by substituting a single amino acid residue that abolished Drp6 interactions with CL. Inhibition of CL synthesis, or perturbation in Drp6 recruitment to nuclear membrane, caused defects in the formation of new macronuclei post-conjugation. Taken together, our results elucidate a molecular basis of target membrane selection by a nuclear dynamin and establish the importance of a defined membrane-binding domain and its target lipid in facilitating nuclear expansion.


Subject(s)
Cardiolipins/metabolism , Dynamins/genetics , Nuclear Envelope/metabolism , Protozoan Proteins/genetics , Tetrahymena thermophila/genetics , Amino Acid Sequence , Dynamins/chemistry , Dynamins/metabolism , Protein Binding , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Sequence Alignment , Tetrahymena thermophila/metabolism
4.
Phys Chem Chem Phys ; 22(22): 12772-12784, 2020 Jun 10.
Article in English | MEDLINE | ID: mdl-32467952

ABSTRACT

The present work has been carried out with the aim to design and develop an efficient light harvesting inorganic-organic hybrid nanoscale material by employing a less toxic, environment friendly inorganic substance and also to understand the mechanism of inter-particle electronic interaction between the inorganic and organic components of the nanomaterial. Specifically, the inorganic-organic hybrid associate has been made by integrating water soluble semiconductor (zinc-silver-indium-sulfide (ZAIS)) QDs and organic J-aggregates of a cyanine dye (S2165). The fabrication of the present nano-hybrid system has been achieved via electrostatically driven self-assembly of organic dyes over ZAIS QDs. The interaction between QD and J-aggregates has been investigated by using steady state and time resolved fluorescence measurements. Zeta potential measurements have also been performed to understand the role of electrostatic interaction and thermodynamic feasibility of the association process. The investigations have revealed that the energy transfer (ET) process between QD and J-aggregates was mediated through a dipole-dipole mechanism. Interestingly, data analysis based on Förster theory has further revealed that the ET from QD to J-aggregates is very high, indicating efficient electronic coupling between the inorganic QD and the organic J-aggregates. Zeta potential measurements and thermodynamic calculations have demonstrated that the interaction between QD and organic dye is electrostatically driven and the association of organic dyes over QDs is thermodynamically feasible. The outcome of the present study is expected to be helpful in designing efficient nanoscale light harvesting devices. Additionally, fluorescence microscopy and toxicity studies on the QDs have also shown their suitability for biological applications.


Subject(s)
Carbocyanines/chemistry , Fluorescent Dyes/chemistry , Quantum Dots/chemistry , Energy Transfer , Indium/chemistry , Molecular Structure , Particle Size , Semiconductors , Silver/chemistry , Solubility , Sulfides/chemistry , Surface Properties , Water/chemistry , Zinc/chemistry
5.
J Biosci ; 43(1): 139-148, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29485122

ABSTRACT

Self-assembly on target membranes is one of the important properties of all dynamin family proteins. Drp6, a dynaminrelated protein in Tetrahymena, controls nuclear remodelling and undergoes cycles of assembly/disassembly on the nuclear envelope. To elucidate the mechanism of Drp6 function, we have characterized its biochemical and biophysical properties using size exclusion chromatography, chemical cross-linking and electron microscopy. The results demonstrate that Drp6 readily forms high-molecular-weight self-assembled structures as determined by size exclusion chromatography and chemical cross-linking. Negative stain electron microscopy revealed that Drp6 assembles into rings and spirals at physiological ionic strength. We have also shown that the recombinant Drp6 expressed in bacteria is catalytically active and its GTPase activity is not enhanced by low salt. These results suggest that, in contrast to dynamins but similar to MxA, Drp6 self-assembles in the absence of membrane templates, and its GTPase activity is not affected by ionic strength of the buffer. We discuss the self-assembly structure of Drp6 and explain the basis for lack of membrane-stimulated GTPase activity.


Subject(s)
Dynamins/chemistry , GTP Phosphohydrolases/chemistry , Guanosine Triphosphate/chemistry , Protozoan Proteins/chemistry , Tetrahymena/chemistry , Binding Sites , Cloning, Molecular , Dynamins/genetics , Dynamins/metabolism , Enzyme Assays , Escherichia coli/genetics , Escherichia coli/metabolism , GTP Phosphohydrolases/genetics , GTP Phosphohydrolases/metabolism , Gene Expression , Genetic Vectors/chemistry , Genetic Vectors/metabolism , Guanosine Triphosphate/metabolism , Kinetics , Nuclear Envelope/chemistry , Nuclear Envelope/enzymology , Nuclear Envelope/ultrastructure , Osmolar Concentration , Protein Binding , Protein Conformation , Protein Interaction Domains and Motifs , Protozoan Proteins/genetics , Protozoan Proteins/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sodium Chloride/chemistry , Tetrahymena/enzymology , Tetrahymena/ultrastructure
6.
J Biosci ; 42(2): 333-344, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28569256

ABSTRACT

Dynamin superfamily proteins comprising classical dynamins and related proteins are membrane remodelling agents involved in several biological processes such as endocytosis, maintenance of organelle morphology and viral resistance. These large GTPases couple GTP hydrolysis with membrane alterations such as fission, fusion or tubulation by undergoing repeated cycles of self-assembly/disassembly. The functions of these proteins are regulated by various post-translational modifications that affect their GTPase activity, multimerization or membrane association. Recently, several reports have demonstrated variety of such modifications providing a better understanding of the mechanisms by which dynamin proteins influence cellular responses to physiological and environmental cues. In this review, we discuss major post-translational modifications along with their roles in the mechanism of dynamin functions and implications in various cellular processes.


Subject(s)
Dynamins/metabolism , Protein Processing, Post-Translational/physiology , Animals , Dynamins/genetics , Multigene Family , Phosphorylation
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