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1.
Comp Immunol Microbiol Infect Dis ; 110: 102189, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38718722

ABSTRACT

Japanese encephalitis virus (JEV) is a major cause of encephalitis in Southeast Asia. Tamil Nadu, a state located in the southern part of India, contributes substantially to the national burden of human JE cases every year. However, limited information is available on the epidemiology of JE in pig populations of Tamil Nadu. A cross-sectional study was conducted to assess JEV prevalence in pig populations of Tamil Nadu. A total of 710 pigs reared in 118 farms across 10 districts of Tamil Nadu were sampled using multistage cluster random sampling. Serum samples were analyzed for their JEV status using Immunoglobulin M (IgM) and Immunoglobulin G (IgG) Enzyme-Linked Immunosorbent Assay (ELISA). At the animal-level, the apparent JEV seroprevalence was 60.4% (95% CI: 56.8% - 64.0%) and the true seroprevalence was 50.1% (95% CI: 47.0% - 53.2%). The herd-level apparent seroprevalence was 94.1% (95% CI: 88.1% - 97.5%) and the true seroprevalence was 93.3% (95% CI: 89.5% - 96.2%). The intensity of JEV circulation was high in all the districts, with seroprevalence ranging between 43% and 100%. Pigs across all age categories were seropositive and a high overall seroprevalence of 95.2% (95% CI: 76.2% - 99.9%) was recorded in pigs older than 12 months. JEV seropositivity was recorded in all the seasons but the prevalence peaked in the monsoon (67.9%, 95% CI: 61.1% - 74.2%) followed by winter (65.1%, 95%CI: 57.4% - 72.2%) and summer (53.3%, 95% CI: 47.8% - 58.8%) seasons. The results indicate that JEV is endemic in pigs populations of the state and a one health approach is essential with collaborative actions from animal and public health authorities to control JE in Tamil Nadu, India.


Subject(s)
Antibodies, Viral , Encephalitis Virus, Japanese , Encephalitis, Japanese , Swine Diseases , Animals , India/epidemiology , Seroepidemiologic Studies , Encephalitis Virus, Japanese/immunology , Encephalitis, Japanese/epidemiology , Encephalitis, Japanese/veterinary , Encephalitis, Japanese/virology , Swine , Swine Diseases/epidemiology , Swine Diseases/virology , Cross-Sectional Studies , Antibodies, Viral/blood , Immunoglobulin G/blood , Immunoglobulin M/blood , Prevalence , Female , Enzyme-Linked Immunosorbent Assay , Male , Seasons
2.
Carbohydr Res ; 541: 109147, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38781716

ABSTRACT

The intricate nature of carbohydrates, particularly monosaccharides, stems from the existence of several chiral centers within their tertiary structures. Predicting and characterizing the molecular geometries and electrostatic landscapes of these substances is difficult due to their complex electrical properties. Moreover, these structures can display a substantial degree of conformational flexibility due to the presence of many rotatable bonds. Moreover, identifying and distinguishing between D and L enantiomers of monosaccharides presents a significant analytical obstacle since there is a need for empirically measurable properties that can distinguish them. This work uses Principal Component Analysis (PCA) to explore the chemical information included in 3D descriptors in order to comprehend the conformational space of d-Mannose stereoisomers. The isomers may be discriminated by utilizing 3D matrix-based indices, geometrical descriptors, and RDF descriptors. The isomers can be distinguished by descriptors, such as the Harary-like index from the reciprocal squared geometrical matrix (H_RG), Harary-like index from Coulomb matrix (H_Coulomb), Wiener-like index from Coulomb matrix (Wi_Coulomb), Wiener-like index from geometrical matrix (Wi_G), Graph energy from Coulomb matrix (SpAbs_Coulomb), Spectral absolute deviation from Coulomb matrix (SpAD_Coulomb), and Spectral positive sum from Coulomb matrix (SpPos_Coulomb). Among these descriptors, the first two, H_RG and H_Coulomb, perform the best in differentiation among the 3D-Matrix-Based Descriptors (3D-MBD) class. The results obtained from this study provide a significant chemical insight into the structural characteristics of the compounds inside the graph theoretical framework. These findings are likely to serve as the basis for developing new methods for analytical experiments.


Subject(s)
Mannose , Principal Component Analysis , Mannose/chemistry , Stereoisomerism , Carbohydrate Conformation , Models, Molecular
3.
Med Chem Res ; 32(3): 391-408, 2023.
Article in English | MEDLINE | ID: mdl-36694836

ABSTRACT

There are a plethora of antibiotic resistance cases and humans are marching towards another big survival test of evolution along with drastic climate change and infectious diseases. Ever since the first antibiotic [penicillin], and the myriad of vaccines, we were privileged to escape many infectious disease threats. The survival technique of pathogens seems rapidly changing and sometimes mimicking our own systems in such a perfect manner that we are left unarmed against them. Apart from searching for natural alternatives, repurposing existing drugs more effectively is becoming a familiar approach to new therapeutic opportunities. The ingenious use of revolutionary artificial intelligence-enabled drug discovery techniques is coping with the speed of such alterations. D-Mannose is a great hope as a nutraceutical in drug discovery, against CDG, diabetes, obesity, lung disease, and autoimmune diseases and recent findings of anti-tumor activity make it interesting along with its role in drug delivery enhancing techniques. A very unique work done in the present investigation is the collection of data from the ChEMBL database and presenting the targetable proteins on pathogens as well as on humans. It shows Mannose has 50 targets and the majority of them are on human beings. The structure and conformation of certain monosaccharides have a decisive role in receptor pathogen interactions and here we attempt to review the multifaceted roles of Mannose sugar, its targets associated with different diseases, as a natural molecule having many success stories as a drug and future hope for disease management.

4.
Appl Biochem Biotechnol ; 194(10): 4511-4529, 2022 Oct.
Article in English | MEDLINE | ID: mdl-35507249

ABSTRACT

Furin, a pro-protein convertase, plays a significant role as a biological scissor in bacterial, viral, and even mammalian substrates which in turn decides the fate of many viral and bacterial infections along with the numerous ailments caused by cancer, diabetes, inflammations, and neurological disorders. In the wake of the current pandemic caused by the virus SARS-CoV-2, furin has become the center of attraction for researchers as the spike protein contains a polybasic furin cleavage site. In the present work, we have searched for novel inhibitors against this interesting human target from FDA-approved antiviral. To enhance the selection of new inhibitors, we employed Kohonen's artificial neural network-based self-organizing maps for ligand-based virtual screening. Promising results were obtained which can help in drug repurposing and network pharmacology studies can address the errors generated due to promiscuity/polypharmacology. We found 15 existing FDA antiviral drugs having the potential to inhibit furin. Among these, six compounds have targets on important human proteins (LDLR, FCGR1A, PCK1, TLR7, DNA, and PNP). The role of these 15 drugs inhibiting furin can be established by studying further on patients infected with number of viruses including SARS-CoV-2. Here we propose two promising candidate FDA drugs GS-441524 and Grazoprevir (MK-5172) for repurposing as inhibitors of furin. The best results were observed with GS-441524.


Subject(s)
COVID-19 Drug Treatment , SARS-CoV-2 , Adenosine/analogs & derivatives , Antiviral Agents/chemistry , Antiviral Agents/pharmacology , Furin/genetics , Humans , Ligands , Neural Networks, Computer , Polypharmacology , Spike Glycoprotein, Coronavirus/chemistry , Spike Glycoprotein, Coronavirus/metabolism , Toll-Like Receptor 7
5.
Urol Ann ; 13(4): 391-396, 2021.
Article in English | MEDLINE | ID: mdl-34759652

ABSTRACT

INTRODUCTION: The association between inflammation and malignancies is being recognized. In this study, we assessed the use of preoperative neutrophil-lymphocyte ratio (NLR) and lymphocyte-monocyte ratio (LMR) in predicting cancer-specific survival (CSS) and inguinal node involvement in patients with carcinoma penis. METHODS: Sixty-nine patients operated for squamous cell carcinoma penis with inguinal node dissection between 2012 and 2020 were identified. We recorded the type of surgery (partial/total penectomy), T stage, grade, lymphovascular invasion (LVI), perineural invasion (PNI), pathological status of inguinal nodes and nodal stage (pN1-3), extranodal extension (ENE), and CSS. The hemogram performed within 2 weeks of surgery was used for calculating NLR and LMR. RESULTS: Partial penectomy was the most common surgery (65.22%) and pT2 was the most common stage (53.62%). Grade 2 was seen in 66.67%, LVI in 34.78%, PNI in 37.68%, 52.17% had inguinal node involvement with pN3 being the most common (36.23%), and 36.23% had ENE. Kaplan-Meier analysis revealed that NLR of >3 and the LMR ≤3 indicated an inferior CSS (P = 0.05 and 0.04, respectively). T stage, inguinal node involvement, LVI, pN stage, and ENE were also associated with inferior CSS (P < 0.05). On multivariate analysis, T stage was significantly associated with CSS (P = 0.02). The NLR >3 and LMR ≤3 were also significantly associated with the presence of pathological inguinal node involvement (P = 0.001 and 0.026). CONCLUSION: NLR and LMR may help in predicting CSS and inguinal node involvement in patients of carcinoma penis.

6.
J Med Case Rep ; 15(1): 369, 2021 Jul 12.
Article in English | MEDLINE | ID: mdl-34253234

ABSTRACT

BACKGROUND: The presence of isolated metachronous adrenal metastasis in patients with esophageal cancer is rare. There is significant controversy regarding the management of such patients. Adrenal metastasectomy has been shown to be of benefit in some reports. Minimally invasive approach, although the gold standard for adrenalectomy, has not been used commonly in a postesophagectomy setting owing to the anticipated technical difficulties. We describe one such case wherein this approach helped in early recovery and long-term survival. CASE PRESENTATION: A 59-year-old male of Asian ethnicity presented with an isolated left adrenal nodule, 3 years after an Ivor Lewis esophagectomy for a lower esophageal adenocarcinoma. The biopsy of the nodule was suggestive of metastatic adenocarcinoma. The patient underwent laparoscopic excision of the left adrenal gland. CONCLUSION: Adrenal metastasectomy, in postesophagectomy patients can provide good oncological control. Laparoscopic approach, though technically challenging, can provide results equivalent to those of open surgery, albeit with less morbidity.


Subject(s)
Adrenal Gland Neoplasms , Esophageal Neoplasms , Laparoscopy , Adrenal Gland Neoplasms/surgery , Adrenalectomy , Esophageal Neoplasms/surgery , Esophagectomy , Humans , Male , Middle Aged
7.
Indian J Urol ; 36(3): 216-218, 2020.
Article in English | MEDLINE | ID: mdl-33082638

ABSTRACT

Pulmonary lymphangitis carcinomatosa occurs due to dissemination of cancer cells in pulmonary lymphatics. It is only rarely seen with urological malignancies and portends a grave prognosis. Its presence in patients with urothelial carcinoma of the urinary bladder is uncommon. We present a case of a nested variant of transitional cell carcinoma of the urinary bladder associated with pulmonary lymphangitis carcinomatosa. We also discuss the symptoms and radiological features that might aid in timely diagnosis of this entity.

8.
J Endourol Case Rep ; 6(4): 405-408, 2020.
Article in English | MEDLINE | ID: mdl-33457686

ABSTRACT

Background: Inflammatory pseudotumor of the kidney is a rare disease of unknown etiology. There are no specific clinical or radiologic findings. The lesion can mimic renal cell carcinoma or transitional cell carcinoma depending on the site of involvement. These tumors, if diagnosed correctly, may respond to medical management. We present a case in which an inflammatory pseudotumor of the renal pelvis was misdiagnosed as a transitional cell carcinoma and unwarranted surgical intervention was performed. Case Presentation: A 39-year-old man presented with left flank pain and gross hematuria. On MRI, there was a hypointense 2.4 × 1.8 cm lesion involving the left renal pelvis. The urine cytology and biopsy of the lesion were inconclusive. On follow-up cans the lesion increased in size and patient had repeated hematuria. The lesion was clinically presumed to be a transitional cell carcinoma of the left renal pelvis. A laparoscopic left side nephroureterectomy along with bladder cuff excision and para-aortic lymphadenectomy was performed. The histology report revealed the lesion to be inflammatory pseudotumor of the renal pelvis. Conclusion: Inflammatory pseudotumor should always be considered in differential diagnosis of pelvic tumors, especially when image findings and biopsies are inconclusive.

9.
J Med Syst ; 33(4): 267-74, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19697693

ABSTRACT

Recent advances in digital imaging technology have greatly enhanced the interpretation of critical/pathology conditions from the 2-dimensional medical images. This has become realistic due to the existence of the computer aided diagnostic tool. A computer aided diagnostic (CAD) tool generally possesses components like preprocessing, identification/selection of region of interest, extraction of typical features and finally an efficient classification system. This paper enumerates on development of CAD tool for classification of chronic liver disease through the 2-D image acquired from ultrasonic device. Characterization of tissue through qualitative treatment leads to the detection of abnormality which is not viable through qualitative visual inspection by the radiologist. Common liver diseases are the indicators of changes in tissue elasticity. One can show the detection of normal, fatty or malignant condition based on the application of CAD tool thereby, further investigation required by radiologist can be avoided. The proposed work involves an optimal block analysis (64 x 64) of the liver image of actual size 256 x 256 by incorporating Gabor wavelet transform which does the texture classification through automated mode. Statistical features such as gray level mean as well as variance values are estimated after this preprocessing mode. A non-linear back propagation neural network (BPNN) is applied for classifying the normal (vs) fatty and normal (vs) malignant liver which yields a classification accuracy of 96.8%. Further multi classification is also performed and a classification accuracy of 94% is obtained. It can be concluded that the proposed CAD can be used as an expert system to aid the automated diagnosis of liver diseases.


Subject(s)
Diagnosis, Computer-Assisted/methods , Liver Diseases/diagnostic imaging , Radiographic Image Enhancement/methods , Radiographic Image Interpretation, Computer-Assisted/methods , Humans , Liver Diseases/classification , Neural Networks, Computer , Pattern Recognition, Automated , Ultrasonography/methods
10.
Eur J Pediatr Surg ; 13(5): 350-4, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14618531

ABSTRACT

Rosai-Dorfman disease (sinus histiocytosis with massive lymphadenopathy) is a newer pathological entity described in 1969. It is a self-limiting disorder of unknown aetiology. It is likely to be mistaken for lymphoma. It predominantly affects children and adolescents. However there are no publications on this disorder in the paediatric surgical literature. In this report we describe a 3-year-old girl who presented with this disease and we critically review the therapeutic options available for children. Prednisolone therapy with long-term follow-up appears to be sufficient. Surgery should be limited to biopsy and relief of compression symptoms.


Subject(s)
Histiocytosis, Sinus/therapy , Child, Preschool , Female , Histiocytosis, Sinus/diagnosis , Humans
11.
Indian J Gastroenterol ; 20(3): 115-6, 2001.
Article in English | MEDLINE | ID: mdl-11400808

ABSTRACT

Two male full-term infants presented with unusual features of lactobezoar. One had gastric disease while the other had small bowel bezoar. The gastric lactobezoar was managed medically while the intestinal one required surgical intervention.


Subject(s)
Bezoars/pathology , Ileum/pathology , Infant Food , Milk, Human , Stomach/pathology , Bezoars/surgery , Bezoars/therapy , Humans , Ileum/surgery , Infant , Male
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