ABSTRACT
The use of saliva and urine as an alternative to serum samples for detection of anti-hepatitis A virus (HAV) IgM antibodies has been documented. However, these samples remain underreported or unexplored for shedding of HAV. To address this issue, paired serum, stool, saliva, and urine samples collected from hepatitis A patients were screened by reverse transcription polymerase chain reaction for detection of HAV RNA. HAV RNA was detected in 67.6% (44/65), 52.3% (34/65), 8.7% (5/57), and 12.3% (8/65) of the serum, stool, saliva, and urine samples, respectively. Phylogenetic analysis of nucleotide sequences obtained for partial RNA polymerase region grouped HAV strains from all of the clinical samples of the study in subgenotype IIIA. Low frequency of HAV nucleic acid in saliva and urine samples indicates limited utility of these samples in genomic studies on HAV but suggests its potential for transmission and infection of hepatitis A.
Subject(s)
Feces/virology , Hepatitis A Virus, Human/isolation & purification , Hepatitis A/virology , Saliva/virology , Serum/virology , Urine/virology , Virus Shedding , Adolescent , Child , Child, Preschool , Female , Genotype , Hepatitis A Virus, Human/classification , Hepatitis A Virus, Human/genetics , Humans , Infant , Male , Molecular Sequence Data , RNA, Viral/genetics , Sequence Analysis, DNA , Sequence HomologyABSTRACT
The study was conducted to investigate the molecular epidemiology of noroviruses (NoVs) from western India. A total of 830 fecal specimens were collected during July 2005-June 2007 from children, < or =7 years of age suffering from acute gastroenteritis in Pune, Nagpur, and Aurangabad cities. All the specimens were subjected to RT-PCR, sequencing and phylogenetic analysis for detection and characterization of Genogroup I (GI) and GII NoVs. NoV positivity varied between 6.3% and 12.6% in different cities with the predominance of GII (96.6%). NoV infections were very common in the patients < or =2 years of age. A majority (55%) of the patients suffered from severe disease, however, vomiting was not experienced in 35%. Coinfections with rotaviruses were found in 10% cases. Summer month seasonality supported NoV infections in western India. The phylogenetic analysis of partial RNA polymerase and VP1 (capsid) genes identified 2 GI (GI. 2 and GI.6) and 5 GII (GII.4, GII.6, GII.7, GII.8, and GII.14) genetic clusters with possible occurrence of "2007 new-variant" of GII.4. Six different combinations of RdRp and capsid genes (GII.b/GII.3, GII.b/GII.4, GII.d/GII.3, GII.b/GII.18, GII.1/GII.12 and GII.3/GII.13) were also identified. GII.4 (52%) prevailed in 2005-2006 while the predominance of probable recombinant NoV strains (58%) was noted in 2006-2007 with the contribution of GII.b/GII.3 at 79% level. GII.b/GII.18 type identified in 37% infections in 2005-2006 was completely replaced by GII.b/GII.3 type in 2006-2007. This is the first report that highlights the norovirus epidemiology and strain diversity demonstrating possible circulation of new variants in patients with acute gastroenteritis from western India.
Subject(s)
Caliciviridae Infections , Gastroenteritis , Molecular Epidemiology , Norovirus , Severity of Illness Index , Age Distribution , Caliciviridae Infections/epidemiology , Caliciviridae Infections/physiopathology , Caliciviridae Infections/virology , Child , Child, Preschool , Feces/virology , Gastroenteritis/epidemiology , Gastroenteritis/physiopathology , Gastroenteritis/virology , Genotype , Humans , India/epidemiology , Infant , Molecular Sequence Data , Norovirus/classification , Norovirus/genetics , Norovirus/isolation & purification , Phylogeny , Recombination, Genetic , Reverse Transcriptase Polymerase Chain Reaction , Seasons , Sequence Analysis, DNAABSTRACT
We report an unusual case of neem oil poisoning in a previously normal 5 year old child. The child presented with refractory seizures and was having metabolic acidosis. Late neurological sequelae in the form of auditory and visual disturbances, and ataxia were present.
