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1.
A dynamic direction for cryo-EM.
Doerr, Allison.
Nat Methods ; 19(1): 29, 2022 01.
Article in English | MEDLINE | ID: mdl-35017731

Subject(s)
Computational Biology/methods , Cryoelectron Microscopy/methods , Algorithms , Cryoelectron Microscopy/trends
2.
Tracking protein conformation in live cells.
Doerr, Allison.
Nat Methods ; 18(12): 1451, 2021 12.
Article in English | MEDLINE | ID: mdl-34862497

Subject(s)
Protein Conformation
3.
Graphene-on-gold grids for cryo-EM.
Doerr, Allison.
Nat Methods ; 16(7): 578, 2019 07.
Article in English | MEDLINE | ID: mdl-31249417

Subject(s)
Graphite , Computer Systems , Cryoelectron Microscopy , Electrodes , Gold
4.
Probes for protein prenylation.
Doerr, Allison.
Nat Methods ; 16(6): 459, 2019 06.
Article in English | MEDLINE | ID: mdl-31147650

Subject(s)
Protein Prenylation
5.
A trap for intermediate enzyme complexes.
Doerr, Allison.
Nat Methods ; 16(3): 217, 2019 03.
Article in English | MEDLINE | ID: mdl-30814698

Subject(s)
beta-Alanine , beta-Alanine/analogs & derivatives , beta-Alanine/chemistry
6.
An FDR metric for top-down proteomics.
Doerr, Allison.
Nat Methods ; 16(3): 218, 2019 03.
Article in English | MEDLINE | ID: mdl-30814700

Subject(s)
Proteome , Proteomics , Tandem Mass Spectrometry
7.
Template-free visual proteomics.
Doerr, Allison.
Nat Methods ; 16(4): 285, 2019 04.
Article in English | MEDLINE | ID: mdl-30923385

Subject(s)
Electrons , Proteomics
8.
Fluctuation X-ray scattering.
Doerr, Allison.
Nat Methods ; 16(1): 25, 2019 01.
Article in English | MEDLINE | ID: mdl-30573826

Subject(s)
Scattering, Small Angle , X-Ray Diffraction , X-Rays
9.
Proteomics data reuse with MassIVE-KB.
Doerr, Allison.
Nat Methods ; 16(1): 26, 2019 01.
Article in English | MEDLINE | ID: mdl-30573830

Subject(s)
Proteome , Proteomics , Databases, Protein , Humans
10.
Single-cell proteomics.
Doerr, Allison.
Nat Methods ; 16(1): 20, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30573843

Subject(s)
Proteomics , Single-Cell Analysis , Amino Acid Sequence , Animals , Mammals , Mass Spectrometry
11.
A methionine modification method.
Doerr, Allison.
Nat Methods ; 15(12): 1002, 2018 12.
Article in English | MEDLINE | ID: mdl-30504878

Subject(s)
Methionine/chemistry
12.
Enhanced antibody validation.
Doerr, Allison.
Nat Methods ; 15(12): 1001, 2018 12.
Article in English | MEDLINE | ID: mdl-30504880

Subject(s)
Antibodies/immunology , Antibody Specificity/immunology
13.
Finding S-sulfinylated proteins.
Doerr, Allison.
Nat Methods ; 15(11): 859, 2018 11.
Article in English | MEDLINE | ID: mdl-30377350

Subject(s)
Oxidoreductases , Proteomics , Cysteine/analogs & derivatives , Proteins
14.
High-speed protein crystallography.
Doerr, Allison.
Nat Methods ; 15(11): 855, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30377367

Subject(s)
Crystallography, X-Ray/instrumentation , Crystallography, X-Ray/methods , Proteins/chemistry , Humans , Protein Conformation
15.
Evolving proteins with improved solubility.
Doerr, Allison.
Nat Methods ; 15(10): 763, 2018 10.
Article in English | MEDLINE | ID: mdl-30275579

Subject(s)
Escherichia coli , Proteins , Solubility
16.
Proximity labeling with TurboID.
Doerr, Allison.
Nat Methods ; 15(10): 764, 2018 10.
Article in English | MEDLINE | ID: mdl-30275580

Subject(s)
Cell Physiological Phenomena , Staining and Labeling
17.
Taking inventory with shotgun EM.
Doerr, Allison.
Nat Methods ; 15(9): 649, 2018 Sep.
Article in English | MEDLINE | ID: mdl-30171238

Subject(s)
Mass Spectrometry/methods , Microscopy, Electron/methods , Protein Conformation , Proteomics/methods
18.
Comprehensive mapping of ubiquitination.
Doerr, Allison.
Nat Methods ; 15(9): 651, 2018 09.
Article in English | MEDLINE | ID: mdl-30171251

Subject(s)
Lysine , Ubiquitin , Ubiquitination
19.
DNA molecular forceps.
Doerr, Allison.
Nat Methods ; 15(7): 482, 2018 07.
Article in English | MEDLINE | ID: mdl-29967503

Subject(s)
DNA Breaks, Double-Stranded , Surgical Instruments , DNA , DNA Repair
20.
A home for integrative structural models.
Doerr, Allison.
Nat Methods ; 15(6): 409, 2018 06.
Article in English | MEDLINE | ID: mdl-29855575

Subject(s)
Databases, Protein , Models, Structural , Proteins/chemistry , Models, Molecular , Protein Conformation
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