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1.
Environ Res ; 259: 119432, 2024 Jun 27.
Article in English | MEDLINE | ID: mdl-38944104

ABSTRACT

The Mediterranean Basin has experienced substantial land use changes as traditional agriculture decreased and population migrated from rural to urban areas, which have resulted in a large forest cover increase. The combination of Landsat time series, providing spectral information, with lidar, offering three-dimensional insights, has emerged as a viable option for the large-scale cartography of forest structural attributes across large time spans. Here we develop and test a comprehensive framework to map forest above ground biomass, canopy cover and forest height in two regions spanning the most representative biomes in the peninsular Spain, Mediterranean (Madrid region) and temperate (Basque Country). As reference, we used lidar-based direct estimates of stand height and forest canopy cover. The reference biomass and volume were predicted from lidar metrics. Landsat time series predictors included annual temporal profiles of band reflectance and vegetation indices for the 1985-2023 period. Additional predictor variables including synthetic aperture radar, disturbance history, topography and forest type were also evaluated to optimize forest structural attributes retrieval. The estimates were independently validated at two temporal scales, i) the year of model calibration and ii) the year of the second lidar survey. The final models used as predictor variables only Landsat based metrics and topographic information, as the available SAR time-series were relatively short (1991-2011) and disturbance information did not decrease the estimation error. Model accuracies were higher in the Mediterranean forests when compared to the temperate forests (R2 = 0.6-0.8 vs. 0.4-0.5). Between the first (1985-1989) and the last (2020-2023) decades of the monitoring period the average forest cover increased from 21 ± 2% to 32 ± 1%, mean height increased from 6.6 ± 0.43 m to 7.9 ± 0.18 m and the mean biomass from 31.9 ± 3.6 t ha-1 to 50.4 ± 1 t ha-1 for the Mediterranean forests. In temperate forests, the average canopy cover increased from 55 ± 4% to 59 ± 3%, mean height increased from 15.8 ± 0.77 m to 17.3 ± 0.21m, while the growing stock volume increased from 137.8 ± 8.2 to 151.5 ± 3.8 m3 ha-1. Our results suggest that multispectral data can be successfully linked with lidar to provide continuous information on forest height, cover, and biomass trends.

2.
Eur J Clin Microbiol Infect Dis ; 39(6): 1089-1094, 2020 Jun.
Article in English | MEDLINE | ID: mdl-31980987

ABSTRACT

The epidemiology of non-tuberculous mycobacteria (NTM) in Spain is largely unknown because systematic reporting is not compulsory. The aim of our study was to describe the frequency and diversity of NTM species in our region and their distribution according to the source sample, gender, and age of the patients. We performed a multicenter study of all NTM isolated in 24 public hospitals in Madrid from 2013 to 2017. A total of 6.923 mycobacteria were isolated: 4535 (65.5%) NTM, and 2.388 (34.5%) Mycobacterium tuberculosis complex (MTB). Overall, 61 different NTM species were identified. The most frequently isolated species were Mycobacterium avium complex (47.7%), M. lentiflavum (12.2%), M. gordonae (9.2%), M. fortuitum (8.9%), and M. abscessus (3.9%). Whereas MTB cases were stable during the study period, the number of NTM isolates increased considerably from 930 isolates in 2013 to 1012 in 2017; a sharp increase occurred in the last year. The rise in NTM isolates was mostly due to M. lentiflavum, M. kansasii, and M. abscessus mainly isolated from respiratory specimens in patients older than 60. The increase in isolation rate of NTM in our region is consistent with the increasing rates reported worldwide in the last decades. The rise in NTM isolates was mainly attributed to M. lentiflavum but it also should be noted the increasing of species with high pathogenic potential such as M. kansasii and M. abscessus.


Subject(s)
Mycobacterium Infections, Nontuberculous/epidemiology , Mycobacterium Infections, Nontuberculous/microbiology , Nontuberculous Mycobacteria/isolation & purification , Female , Humans , Laboratories, Hospital , Male , Middle Aged , Nontuberculous Mycobacteria/classification , Retrospective Studies , Spain/epidemiology , Tuberculosis/epidemiology , Tuberculosis/microbiology
3.
J Hosp Infect ; 102(1): 108-115, 2019 May.
Article in English | MEDLINE | ID: mdl-30448277

ABSTRACT

BACKGROUND: Staphylococcus aureus meningitis is an uncommon nosocomial infection usually associated with neurosurgical procedures, but spontaneous infections may occasionally appear. AIMS: To compare the features of meningitis caused by meticillin-resistant (MRSA) and meticillin-susceptible (MSSA) S. aureus and examine the prognostic factors for mortality, including MRSA infection and combined antimicrobial therapy. METHODS: Retrospective cohort study of 350 adults with S. aureus meningitis admitted to 11 hospitals in Spain (1981-2015). Logistic regression and propensity score matching were used to analyse prognostic factors. RESULTS: There were 118 patients (34%) with MRSA and 232 (66%) with MSSA. Postoperative infection (91% vs 73%) and nosocomial acquisition (93% vs 74%) were significantly more frequent in MRSA than in MSSA meningitis (P < 0.001). Combined therapy was given to 118 (34%) patients. Overall 30-day mortality rate was 23%. On multivariate analysis, mortality was associated with severe sepsis or shock (odds ratio (OR) 9.9, 95% confidence interval (CI) 4.5-22.0, P < 0.001), spontaneous meningitis (OR 4.2, 95% CI 1.9-9.1, P < 0.001), McCabe-Jackson score rapidly or ultimately fatal (OR 2.8, 95% CI 1.4-5.4, P = 0.002), MRSA infection (OR 2.6, 95% CI 1.3-5.3, P = 0.006), and coma (OR 2.6, 95% CI 1.1-6.1, P < 0.029). In postoperative cases, mortality was related to retention of cerebrospinal devices (OR 7.9, 95% CI 3.1-20.3, P < 0.001). CONCLUSIONS: Clinical and epidemiological differences between MRSA and MSSA meningitis may be explained by the different pathogenesis of postoperative and spontaneous infection. In addition to the severity of meningitis and underlying diseases, MRSA infection was associated with increased mortality. Combined antimicrobial therapy was not associated with increased survival.


Subject(s)
Cross Infection/epidemiology , Meningitis, Bacterial/epidemiology , Methicillin Resistance , Staphylococcal Infections/epidemiology , Staphylococcus aureus/drug effects , Staphylococcus aureus/isolation & purification , Adolescent , Adult , Aged , Aged, 80 and over , Anti-Bacterial Agents/therapeutic use , Cross Infection/microbiology , Cross Infection/mortality , Cross Infection/pathology , Female , Hospitals , Humans , Male , Meningitis, Bacterial/microbiology , Meningitis, Bacterial/mortality , Meningitis, Bacterial/pathology , Middle Aged , Prognosis , Retrospective Studies , Spain/epidemiology , Staphylococcal Infections/microbiology , Staphylococcal Infections/mortality , Staphylococcal Infections/pathology , Survival Analysis , Young Adult
6.
Oral Dis ; 16(5): 488-95, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20233313

ABSTRACT

OBJECTIVES: Cystinosis is a rare autosomal recessive lysosomal storage disorder with developmental and mineralization anomalies as part of its clinical presentation. The objective of this study was to provide the first systematic assessment of the craniofacial and dental characteristics associated with cystinosis. STUDY DESIGN: Oral and radiographic evaluations were performed on 73 patients with cystinosis. Analyses of cephalometry (n = 20), taurodontism (n = 47), caries (n = 47), enamel defects (n = 48), soft tissue anomalies (n = 48), and dental age (n = 41) were performed on the cystinosis group, and compared with age- and sex-comparable controls or standards. RESULTS: Cystinosis patients manifested relative mandibular deficiency, an increased facial height, and a reduced airway space. Taurodontism and enamel defects were significantly more prevalent in cystinosis patients compared with controls (P < 0.0001 and P = 0.027, respectively). Children (aged <15 years) with cystinosis also demonstrated a significant delay, of almost 9 months, of their dental development (P < 0.001). CONCLUSION: Novel craniofacial and dental features are associated with cystinosis. Craniofacial deficiencies may influence the swallowing and respiratory complications seen in cystinosis. Renal pathology and associated mineral imbalance may explain the dental root and enamel anomalies found in cystinosis patients; the developmental delays in cystinosis include delayed dental formation.


Subject(s)
Craniofacial Abnormalities/diagnosis , Cystinosis/complications , Tooth Abnormalities/diagnosis , Adolescent , Adult , Age Determination by Teeth , Anodontia/diagnosis , Anodontia/etiology , Case-Control Studies , Cephalometry , Child , Child, Preschool , Craniofacial Abnormalities/etiology , DMF Index , Dental Caries/diagnosis , Dental Caries/etiology , Dental Enamel/abnormalities , Dental Pulp Cavity/abnormalities , Female , Glossitis, Benign Migratory/diagnosis , Glossitis, Benign Migratory/etiology , Humans , Male , Mandible/abnormalities , Odontogenesis/physiology , Tooth Abnormalities/etiology , Tooth Root/abnormalities , Vertical Dimension , Young Adult
8.
Clin Microbiol Infect ; 15(5): 435-42, 2009 May.
Article in English | MEDLINE | ID: mdl-19416291

ABSTRACT

In recent years, the number of cases of tuberculosis (TB) among immigrants in Spain has increased markedly, and led to this analysis of the recent transmission patterns of TB in the immigrant population in Madrid. The countries from which the highest number of immigrant cases have been reported were Ecuador (21%), Romania (16%), Morocco (12%), Peru (11%) and Bolivia (9%). Fifty-one per cent of the cases were from South America. In a multicentre study (2004-2006), IS6110 restriction fragment length polymorphism and spoligotyping were used to genotype the Mycobacterium tuberculosis isolates from 632 immigrant cases from 47 countries. A total of 183 cases (29%) were grouped into 59 clusters, which are markers of potential transmission events. Most of the clusters (81%) included patients living in different healthcare districts, and 54% of the clusters were multinational. When a sample of 478 autochthonous cases was included, 53% of the clusters involving immigrants also included autochthonous cases. This study revealed marked transmission permeability among nationalities and between the immigrant and the autochthonous populations.


Subject(s)
Emigrants and Immigrants , Mycobacterium tuberculosis/classification , Mycobacterium tuberculosis/genetics , Tuberculosis/epidemiology , Tuberculosis/transmission , Bacterial Typing Techniques , Cluster Analysis , DNA Fingerprinting , Genotype , Humans , Molecular Epidemiology , Mycobacterium tuberculosis/isolation & purification , Spain/epidemiology
9.
Oral Dis ; 15(3): 187-95, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19236595

ABSTRACT

OBJECTIVE: Hutchinson-Gilford progeria syndrome (HGPS) is a rare early-onset accelerated senescence syndrome. In HGPS, a recently identified de novo dominant mutation of the lamin A gene (LMNA) produces abnormal lamin A, resulting in compromised nuclear membrane integrity. Clinical features include sclerotic skin, cardiovascular and bone abnormalities, and marked growth retardation. Craniofacial features include 'bird-like' facies, alopecia, craniofacial disproportion, and dental crowding. Our prospective study describes dental, oral soft tissue, and craniofacial bone features in HGPS. METHODS: Fifteen patients with confirmed p.G608G LMNA mutation (1-17 years, seven males, eight females) received comprehensive oral evaluations. Anomalies of oral soft tissue, gnathic bones, and dentition were identified. RESULTS: Radiographic findings included hypodontia (n = 7), dysmorphic teeth (n = 5), steep mandibular angles (n = 11), and thin basal bone (n = 11). Soft tissue findings included ogival palatal arch (n = 8), median sagittal palatal fissure (n = 7), and ankyloglossia (n = 7). Calculated dental ages (9 months to 11 years 2 months) were significantly lower than chronological ages (1 year 6 months to 17 years 8 months) (P = 0.002). Eleven children manifested a shorter mandibular body, anterior/posterior cranial base and ramus, but a larger gonial angle, compared to age/gender/race norms. CONCLUSION: Novel oral-craniofacial phenotypes and quantification of previously reported features are presented. Our findings expand the HGPS phenotype and provide additional insight into the complex pathogenesis of HGPS.


Subject(s)
Age Determination by Teeth , Anodontia/complications , Maxillofacial Abnormalities/complications , Progeria/complications , Tooth Abnormalities/complications , Abnormalities, Multiple/pathology , Adolescent , Alveolar Process/pathology , Anodontia/pathology , Child , Child, Preschool , Facies , Female , Humans , Infant , Male , Malocclusion/complications , Malocclusion/pathology , Maxillofacial Abnormalities/pathology , Mouth Diseases/complications , Mouth Diseases/pathology , Phenotype , Progeria/pathology , Prospective Studies , Syndrome , Tooth Abnormalities/pathology
10.
Oral Dis ; 15(3): 196-205, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19143946

ABSTRACT

INTRODUCTION AND OBJECTIVE: To characterize enamel defects in patients with methylmalonic acidemia (MMA) and cobalamin (cbl) metabolic disorders and to examine salivary methylmalonate levels in MMA. SUBJECTS AND METHODS: Teeth from patients (n = 32) were evaluated for enamel defects and compared with age- and gender-matched controls (n = 55). Complementation class (mut, cblA, cblB and cblC) and serum methylmalonate levels were examined. Primary teeth from two patients were examined by light and scanning electron microscopy and salivary methylmalonate levels from two patients were analyzed. RESULTS: Enamel defects were significantly more prevalent per tooth in the affected group than the control group, across complementation types (P < 0.0001). The mut MMA subgroup had a significantly higher prevalence per individual of severe enamel defects than controls (P = 0.021), and those with enamel defects exhibited higher serum methylmalonate levels than those without (P = 0.017). Salivary methylmalonate levels were extremely elevated and were significantly higher than controls (P = 0.002). Primary teeth were free of enamel defects except for two cblC patients who exhibited severe enamel hypoplasia. One primary tooth from a cblC patient manifested markedly altered crystal microstructure. CONCLUSION: Enamel anomalies represent a phenotypic manifestation of MMA and cbl metabolic disorders. These findings suggest an association between enamel developmental pathology and disordered metabolism.


Subject(s)
Dental Enamel/abnormalities , Metabolism, Inborn Errors/complications , Methylmalonic Acid/metabolism , Tooth Abnormalities/metabolism , Vitamin B 12/metabolism , Adolescent , Adult , Biomarkers/metabolism , Case-Control Studies , Child , Dental Enamel/ultrastructure , Dentition, Permanent , Female , Genetic Complementation Test , Humans , Male , Matched-Pair Analysis , Metabolism, Inborn Errors/classification , Metabolism, Inborn Errors/metabolism , Reference Values , Saliva/metabolism , Statistics, Nonparametric , Tooth Abnormalities/complications , Tooth, Deciduous , Young Adult
11.
Oral Dis ; 15(1): 2-7, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19036057

ABSTRACT

Autosomal dominant hyper IgE (HIES or Job's) syndrome is a rare primary immune deficiency characterized by eczema, recurrent skin and lung infections, extremely elevated serum IgE, and a variety of connective tissue and skeletal abnormalities. Individuals with HIES share a characteristic facial appearance and many oral manifestations including retained primary dentition, a high arched palate, variations of the oral mucosa and gingiva, and recurrent oral candidiasis. Mutations in STAT3 account for the majority, if not all, of the cases of autosomal dominant HIES, but the pathogenesis of the many varied features remains poorly understood. In this review, we discuss the clinical phenotype of HIES including immunologic and non-immunologic features, the genetics of HIES, and treatment.


Subject(s)
Job Syndrome/immunology , Mouth Diseases/immunology , Tooth Diseases/immunology , Candidiasis, Oral/immunology , Facies , Gingival Diseases/immunology , Humans , Job Syndrome/genetics , Mouth Mucosa/pathology , Mutation/genetics , Palate/pathology , Phenotype , Recurrence , STAT3 Transcription Factor/genetics , Tooth, Deciduous/pathology
12.
Oral Dis ; 14(5): 419-27, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18938267

ABSTRACT

Dyskeratosis congenita (DC) is an inherited bone marrow failure syndrome that is characterized by lacey reticular hyperpigmentation of the skin, dystrophic nails, mucous membrane leukoplakia and pancytopenia. Diagnosis may be delayed until clinical signs are apparent. Severe pancytopenia frequently causes early mortality of DC patients, who have an increased risk of developing oropharyngeal squamous cell carcinoma. Several case reports have described oral changes in DC, which include oral leukoplakia, increased dental caries, hypodontia, thin enamel structure, aggressive periodontitis, intraoral brown pigmentation, tooth loss, taurodontism and blunted roots. We determined the prevalence of these previously reported findings in a cohort of 17 patients with DC and 23 family members. The most common oral changes in DC patients were oral leukoplakia (65% of the entire DC population), decreased root/crown ratio (75% with sufficient tooth development) and mild taurodontism (57% with sufficient tooth development). From the clinical perspective, a diagnosis of DC or other inherited bone marrow failure syndrome should be considered in young persons with oral leukoplakia, particularly those with no history of smoking. Multiple permanent teeth with decreased root/crown ratios further suggest DC.


Subject(s)
Dyskeratosis Congenita/complications , Leukoplakia, Oral/complications , Mouth Diseases/complications , Tooth Abnormalities/complications , Adolescent , Adult , Case-Control Studies , Cohort Studies , Cross-Sectional Studies , DMF Index , Dental Pulp Cavity/abnormalities , Dentition, Permanent , Family , Female , Humans , Male , Middle Aged , Odontometry , Reference Values , Tooth Crown/abnormalities , Tooth Root/abnormalities
13.
Oral Dis ; 14(1): 73-81, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18173452

ABSTRACT

AIM: Hyperimmunoglobulin-E syndrome (HIES) is a primary immunodeficiency characterized by eczema, recurrent skin and lung infections with pneumatocoele formation, and extremely elevated serum immunoglobulin-E. The precise immunologic defect and genetic etiology remain unknown. Non-immunologic findings include characteristic facial features (prominent forehead, fleshy nasal tip, and increased interalar distance); skeletal involvement (pathological fractures, scoliosis, and craniosynostosis); and retention of primary teeth. This study aims to characterize intraoral soft tissue findings in HIES patients. METHODS: Sixty HIES patients (4-54 years, 27 males, 33 females) received intraoral and radiographic evaluations. Chronological dental development was also assessed. RESULTS: Lesions of the hard palate and dorsal tongue were found in 55% and 60% of patients, respectively. Palatal lesions ranged from a generalized surface keratosis to a midline sagittal fibrotic bridge. Tongue lesions consisted of multiple fissures and a midline cleft. On the lip and buccal mucosa, keratotic plaques and/or surface fissures were found in 8% and 23% of patients, respectively. Manifested in 76.7% of patients, the intraoral lesions were significantly more prevalent than the characteristic facial traits (P=0.0013). CONCLUSIONS: Alterations in oral mucosa and gingiva were present in the majority of HIES patients. These novel intraoral findings may facilitate the diagnosis of HIES.


Subject(s)
Hypergammaglobulinemia/immunology , Immunoglobulin E/immunology , Mouth Diseases/immunology , Adolescent , Adult , Child , Child, Preschool , Female , Fibrosis , Humans , Leukoplakia, Oral/immunology , Lip Diseases/immunology , Male , Middle Aged , Mouth Mucosa/immunology , Odontogenesis/immunology , Palate, Hard/immunology , Phenotype , Syndrome , Tongue/abnormalities , Tongue Diseases/immunology
16.
Rev Esp Quimioter ; 19(1): 34-8, 2006 Mar.
Article in Spanish | MEDLINE | ID: mdl-16688289

ABSTRACT

Helicobacter pylori possess various virulence factors, including cagA and vacA genes, that are associated with more aggressive symptoms such as bleed-ing ulcer and gastric cancer. Although there are different treatment regimens, there is still a failure rate of up to 20% due to antibiotic resistance, among other causes. In our country resistance to metronidazole and clarithromycin is increasing, especially in children, although they are still susceptible to amoxicillin and tetracycline. In order to determine the susceptibility pattern to these antibiotics 36 H. pylori clinical isolates were studied. MIC was determined by agar diffusion and agar dilution, and vacA and cagA genes were detected by conventional PCR. All isolates were susceptible to amoxicillin and tetracycline. Resistance to metronidazole by diffusion or dilution tests was 35.7% and 36.1%, respectively, and to clarithromycin, 21.4% and 22.3%, respectively. There was one strain that showed intermediate resistance to clarithromycin (MIC 0.38 mg/l), using agar diffusion, and that was included among the resistant strains. Three discrepancies were observed between the diffusion and dilution methods. The vacA s1 allele was detected in 17.2% of the strains, and vacA s2 in 82.8%; 51.7% of the total were cagA+. In conclusion, all strains tested in our study were susceptible to amoxicillin and tetracycline, allowing them to be considered as first-line antibiotics, while clarithromycin and metronidazole maintain a slight increase in their resistance level. The cagA+ strains were detected in expected quantities, while the s1 allele of the vacA gene was detected in lower quantities.


Subject(s)
Amoxicillin/pharmacology , Anti-Bacterial Agents/pharmacology , Clarithromycin/pharmacology , Drug Resistance, Bacterial , Helicobacter Infections/microbiology , Helicobacter pylori/drug effects , Metronidazole/pharmacology , Tetracycline/pharmacology , Adult , Antigens, Bacterial/genetics , Bacterial Proteins/genetics , Child , DNA, Bacterial/genetics , DNA, Bacterial/isolation & purification , Drug Resistance, Multiple, Bacterial , Helicobacter pylori/classification , Helicobacter pylori/genetics , Helicobacter pylori/isolation & purification , Helicobacter pylori/pathogenicity , Humans , Microbial Sensitivity Tests , Species Specificity , Virulence/genetics
17.
Rev. esp. quimioter ; 19(1): 34-38, mar. 2006. tab
Article in Es | IBECS | ID: ibc-047274

ABSTRACT

Helicobacter pylori posee diversos factores de patogenicidad, entre los que se encuentran los genes vacA y cagA, que se han asociado a síntomas más graves. Las diferentes pautas de tratamiento tienen fallos de erradicación de hasta el 20% debido, entre otras causas, al desarrollo de resistencia a los antibióticos. En nuestro medio está aumentando la resistencia de H. pylori al metronidazol y la claritromicina, especialmente en los niños, aunque mantiene su sensibilidad a la amoxicilina y la tetraciclina. Para conocer el patrón de sensibilidad a estos antibióticos se estudiaron 36 aislamientos clínicos de H. pylori. Se determinó la CMI por difusión y dilución en agar, y la detección de los genes vacA y cagA se realizó por PCR convencional. Todas las cepas fueron sensibles a la amoxicilina y la tetraciclina. La resistencia al metronidazol por difusión y por dilución fue del 35,7% y el 36,1%, y a la claritromicina del 21,4% y el 22,3%, respectivamente. Hubo una cepa con resistencia intermedia a la claritromicina (CMI de 0,38 mg/l) por el método de difusión en agar, que se incluyó entre las cepas resistentes. Se observaron tres discrepancias entre los dos métodos de sensibilidad. El alelo s1 del gen vacA se detectó en el 17,2% de las cepas y el alelo s2 en el 82,8%. El 51,7% de ellas presentaban el gen cagA. Por lo tanto, todas las cepas probadas fueron sensibles a la amoxicilina y la tetraciclina, pudiendo considerar a estos antibióticos como de primera línea, mientras se mantiene un ligero aumento en los valores de resistencia a claritromicina y metronidazol. El gen cagA se presentó en los porcentajes esperados, mientras que el alelo s1 del gen vacA fue detectado en una proporción menor


Helicobacter pylori possess various virulence factors, including cagA and vacA genes, that are associated with more aggressive symptoms such as bleeding ulcer and gastric cancer. Although there are different treatment regimens, there is still a failure rate of up to 20% due to antibiotic resistance, among other causes. In our country resistance to metronidazole and clarithromycin is increasing, especially in children, although they are still susceptible to amoxicillin and tetracycline. In order to determine the susceptibility pattern to these antibiotics 36 H. pylori clinical isolates were studied. MIC was determined by agar diffusion and agar dilution, and vacA and cagA genes were detected by conventional PCR. All isolates were susceptible to amoxicillin and tetracycline. Resistance to metronidazole by diffusion or dilution tests was 35.7% and 36.1%, respectively, and to clarithromycin, 21.4% and 22.3%, respectively. There was one strain that showed intermediate resistance to clarithromycin (MIC 0.38 mg/l), using agar diffusion, and that was included among the resistant strains. Three discrepancies were observed between the diffusion and dilution methods. The vacA s1 allele was detected in 17.2% of the strains, and vacA s2 in 82.8%; 51.7% of the total were cagA+. In conclusion, all strains tested in our study were susceptible to amoxicillin and tetracycline, allowing them to be considered as first-line antibiotics, while clarithromycin and metronidazole maintain a slight increase in their resistance level. The cagA+ strains were detected in expected quantities, while the s1 allele of the vacA gene was detected in lower quantities


Subject(s)
Child , Adult , Humans , Amoxicillin/pharmacology , Anti-Bacterial Agents/pharmacology , Clarithromycin/pharmacology , Drug Resistance, Bacterial , Helicobacter Infections/microbiology , Helicobacter pylori , Metronidazole/pharmacology , Tetracycline/pharmacology , Antigens, Bacterial/genetics , Bacterial Proteins/genetics , DNA, Bacterial/genetics , DNA, Bacterial/isolation & purification , Drug Resistance, Multiple, Bacterial , Helicobacter pylori/classification , Helicobacter pylori/genetics , Helicobacter pylori/isolation & purification , Helicobacter pylori/pathogenicity , Species Specificity , Virulence/genetics , Microbial Sensitivity Tests
18.
Rev Esp Quimioter ; 18(3): 222-5, 2005 Sep.
Article in Spanish | MEDLINE | ID: mdl-16369664

ABSTRACT

Tuberculosis is considered a serious public health problem. Some factors, such as HIV infection and immigration, have had a major impact on the epidemiology of this illness in Spain. The problem has worsened in recent years due to the dissemination of multiresistant strains. Therefore, a periodic surveillance should be established with respect to the incidence and the resistances observed. In this study we collect M. tuberculosis isolates carried out in the years 2001, 2002, 2003 and 2004, and their susceptibility characteristics in patients from Area 2 in Madrid. To evaluate the isolates' susceptibilities, the MGIT 960 system was used. Of a total of 244 isolates, 15.2% were resistant to at least one antibiotic (different to streptomycin), and 29.9% of the isolates were obtained in samples from immigrant patients. In addition, the immigrant population affected showed a greater percentage of resistances (p <0.01) and a younger mean age (p <0.01) than the indigenous population.


Subject(s)
Drug Resistance, Bacterial , Mycobacterium tuberculosis/drug effects , Adult , Child , HIV Infections/microbiology , Hospitals, Urban , Humans , Middle Aged , Spain , Time Factors , Transients and Migrants , Urban Health
19.
Rev. esp. quimioter ; 18(4): 313-318, oct.-dic. 2005. tab
Article in Es | IBECS | ID: ibc-042933

ABSTRACT

Claritromicina, amoxicilina, tetracilina y metronidazol son los antimicrobianos más utilizados en las infecciones por Helicobacter pylori. La resistenciaa la tetraciclina y a la amoxicilina es poco frecuente, pero la resistencia a la claritromicina y al metronidazol depende de la poblaciónestudiada y es un importante marcador de fallo terapéutico. El objetivo de este estudio era determinar la actividad in vitro de furazolidonay nitrofurantoína en 164 aislamientos clínicos de H. pylori mediante dilución en agar, y determinar la tasa de mutación espontánea enocho cepas. La resistencia al metronidazol fue del 23,77% (IC95%: 18,96-29,14) y a la claritromicina del 16,78% (IC95%: 12,64-21,62);además, un 1,4% (IC95%: 0,38-3,54) mostraron resistencia intermedia a la claritromicina. Todas las cepas fueron sensibles a la amoxicilina ya la tetraciclina. El porcentaje de resistencia a la furazolidona y la nitrofurantoína fue del 1,82% (IC95%: 0,37-5,25) y el 0,6% (IC95%: 0-3,35),respectivamente. Las tres cepas resistentes a la furazolidona fueron sensibles a la nitrofurantoína (CMI = 4 mg/l para furazolidona y 2 mg/l paranitrofurantoína), y la única cepa resistente a la nitrofurantoína fue sensible a la furazolidona (CMI = 4 mg/l para nitrofurantoína y 1 mg/l parafurazolidona). Estas cuatro cepas eran resistentes al metronidazol (CMI = 16 mg/l). No se detectó mutación espontánea que confiriera resistenciaa furazolidona ni a nitrofurantoína en las ocho cepas de H. pylori estudiadas; sin embargo, sí se detectaron mutantes resistentes ametronidazol en las ocho cepas, con una tasa de mutación de 7,4 × 10-10 a 9,4 × 10-10. La furazolidona y la nitrofurantoína mostraron una excelenteactividad in vitro, lo que puede ratificar la utilidad de la furazolidona como antimicrobiano de segunda línea cuando ha fallado el tratamiento,o como tratamiento de primera línea en poblaciones con pocos recursos económicos


Clarithromycin, amoxicillin, tetracycline and metronidazole are the most frequently used antimicrobials for Helicobacter pylori infection treatment.While tetracycline and amoxicillin resistance are rare, clarithromycin and metronidazole resistance vary in different populations andare considered factors for treatment failure. The aim of this study was to determine the in vitro activity of furazolidone and nitrofurantoinin 164 H. pylori clinical isolates by agar dilution and to determine the spontaneous mutation rate. Metronidazole and clarithromycin resistancewere 23.77% (CI95%: 18.96-29.14) and 16.78% (CI95%: 12.64-21.62), respectively; moreover, 1.4% (CI95%: 0.38-3.54) were intermediateto clarithromycin. All the isolates were susceptible to amoxicillin and tetracycline. Furazolidone and nitrofurantoin resistancerates were 1.82% (CI95%: 0.37-5.25) and 0.6% (CI95%: 0-3.35), respectively. The three furazolidone-resistant strains were nitrofurantoinesusceptible(MIC 4 mg/l for furazolidone and 2 mg/l for nitrofurantoin) and the nitrofurantoin-resistant strains were furazolidone-susceptible(MIC 4 mg/l for nitrofurantoin and 1 mg/l for furazolidone). These four strains were metronidazole-resistant (MIC 16 mg/l). Furazolidoneor nitrofurantoin spontaneous mutants were not detected in the eight H. pylori strains tested. However, mutants with resistance to metronidazolewere found with all the strains with a mutation rate of 7.4 × 10-10 to 9.4 × 10-10. Furazolidone and nitrofurantoin showed an excellentin vitro activity against the H. pylori clinical isolates included herein, supporting the usefulness of furazolidone as second-line antimicrobialafter treatment failure or as first-line therapy in populations with low economical resources


Subject(s)
Humans , Furazolidone/pharmacokinetics , Nitrofurantoin/pharmacokinetics , Helicobacter pylori , Microbial Sensitivity Tests/methods , Helicobacter pylori/pathogenicity , Helicobacter Infections/drug therapy , Mutation , Drug Resistance, Bacterial
20.
Arch Bronconeumol ; 41(10): 560-5, 2005 Oct.
Article in Spanish | MEDLINE | ID: mdl-16266669

ABSTRACT

OBJECTIVE: Patients with cystic fibrosis are at great risk of infection by nontuberculous mycobacteria from the environment because of certain predisposing factors such as bronchiectasis, malnutrition, and diabetes. The aim of this study was to analyze the mycobacterial content of sputum smears and cultures from adult patients with cystic fibrosis attended at a specialized unit for adults from March 1997 through December 2001. PATIENTS AND METHODS: Sputum samples were collected prospectively according to a protocol applied at each visit, and during most exacerbations staining and culture for mycobacteria were ordered in addition to the usual cultures for bacteria and fungi. A tuberculin test was performed at the end of the study. RESULTS: Twenty-eight patients (16 men) with cystic fibrosis were enrolled. The mean (SD) age was 25.3 (6.7) years. A total of 251 samples were cultured (range in number of samples per patient, 1-31). The mean period of follow up was 40.3 (22.1) months. The sputum smear was positive in 29 cases (4 patients); the culture was positive in 7 patients. More than 3 samples were positive in only 4 patients. Mycobacterium abscessus was isolated in 3 cases, Mycobacterium avium complex in 2 and Mycobacterium simiae in 1 and other an unidentified rapid growth Mycobacterium species. The Mantoux test was positive in 5 patients. Two of the 4 patients in whose samples mycobacteria were isolated repeatedly required treatment. CONCLUSIONS: The prevalence of nontuberculous mycobacterial infection is high in patients with cystic fibrosis. Staining and culture for mycobacteria should be carried out regularly and whenever exacerbation of pulmonary symptoms cannot be attributed to bacteria usually found in such patients. Patients with recurrent isolations of mycobacteria should be monitored closely.


Subject(s)
Cystic Fibrosis/microbiology , Nontuberculous Mycobacteria/isolation & purification , Sputum/microbiology , Adult , Algorithms , Female , Humans , Male , Prospective Studies
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