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1.
Head Neck Pathol ; 14(2): 362-373, 2020 Jun.
Article in English | MEDLINE | ID: mdl-31098787

ABSTRACT

The purpose of this study was to define the proteome profile of fine needle aspiration (FNA) samples of malignant major salivary gland tumors (MSGT) compared to benign counterparts, and to evaluate potential clinical correlations and future applications. Patients affected by MSGT (n = 20), pleomorphic adenoma (PA) (n = 37) and Warthin's tumor (WT) (n = 14) were enrolled. Demographic, clinical and histopathological data were registered for all patients. FNA samples were processed to obtain the protein extracts. Protein separation was obtained by two-dimensional electrophoresis (2-DE) and proteins were identified by mass spectrometry. Western blot analysis was performed to validate the 2-DE results. Statistical differences between groups were calculated by the Mann-Whitney U test for non-normal data. Spearman's rank correlation coefficient was calculated to evaluate correlations among suggested protein biomarkers and clinical parameters. Twelve and 27 differentially expressed spots were found for MSGT versus PA and MSGT versus WT, respectively. Among these, annexin-5, cofilin-1, peptidyl-prolyl-cis-trans-isomerase-A and F-actin-capping-alpha-1 were able to differentiate MSGT from PA, WT, and healthy samples. Moreover, STRING analysis suggested cofilin-1 as a key node of protein interactions. Some of the overexpressed proteins are related to some clinical factors of our cohort, such as survival and outcome. Our results suggest potential protein biomarkers of MSGT, which could allow for more appropriate treatment plans, as well as shedding light on the molecular pathways involved.


Subject(s)
Biomarkers, Tumor/metabolism , Salivary Gland Neoplasms/diagnosis , Adenolymphoma/diagnosis , Adenoma, Pleomorphic/diagnosis , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/analysis , Biopsy, Fine-Needle , Female , Humans , Male , Middle Aged , Proteomics
2.
Mol Neurobiol ; 56(9): 6451-6459, 2019 Sep.
Article in English | MEDLINE | ID: mdl-30826968

ABSTRACT

A plethora of complex misfolded protein combinations have been found in Alzheimer disease (AD) brains besides the classical pathological hallmarks. Recently, α-synuclein (α-syn) and its heterocomplexes with amyloid-ß (Aß) and tau have been suggested to be involved in the pathophysiological processes of neurodegenerative diseases. These pathological features are not limited to the brain, but can be also found in peripheral fluids. In this respect, red blood cells (RBCs) have been suggested as a good model to investigate the biochemical alterations of neurodegeneration. Our aim is to find whether RBC concentrations of α-syn and its heterocomplexes (i.e., α-syn/Aß and α-syn/tau) were different in AD patients compared with healthy controls (HC). The levels of homo- and heteroaggregates of α-syn, Aß and tau, were analyzed in a cohort of AD patients at early stage either with dementia or prodromal symptoms (N = 39) and age-matched healthy controls (N = 39). All AD patients received a biomarker-based diagnosis (low cerebrospinal fluid levels of Aß peptide combined with high cerebrospinal fluid concentrations of total tau and/or phospho-tau proteins; alternatively, a positivity to cerebral amyloid-PET scan). Our results showed lower concentrations of α-syn and its heterocomplexes (i.e., α-syn/Aß and α-syn/tau) in RBCs of AD patients with respect to HC. RBC α-syn/Aß as well as RBC α-syn/tau heterodimers discriminated AD participants from HC with fair accuracy, whereas RBC α-syn concentrations differentiated poorly the two groups. Although additional investigations are required, these data suggest α-syn heteroaggregates in RBCs as potential tool in the diagnostic work-up of early AD diagnosis.


Subject(s)
Alzheimer Disease/blood , Alzheimer Disease/diagnosis , Erythrocytes/metabolism , alpha-Synuclein/blood , Aged , Biomarkers/blood , Cohort Studies , Female , Humans , Male , Middle Aged , ROC Curve
3.
Int J Biol Markers ; 32(1): e126-e131, 2017 Mar 02.
Article in English | MEDLINE | ID: mdl-27646775

ABSTRACT

INTRODUCTION: Malignant pleural mesothelioma (MPM) is a relatively rare tumor, with the epithelioid type occurring more frequently. Several biomarkers have been suggested for screening and early diagnosis of MPM. Currently, high levels of soluble mesothelin-related peptides (SMRP), plasma osteopontin (pOPN) and vimentin have been reported in patients with MPM as promising markers for diagnosis, but their clinical use in monitoring is still discussed. The aim of our study was to evaluate the usefulness of these substances as markers of the clinical response to treatment in patients suffering from epithelioid mesothelioma. METHODS: 219 serum samples from 56 patients were collected during follow-up and the clinical response to therapy was recorded. Percentage differences between 2 consecutive measurements of SMRP, osteopontin and vimentin (Δ markers) by means of commercially available kits were correlated with changes in the clinical course. RESULTS: Δ SMRP, Δ pOPN and Δ vimentin showed statistically significant differences between the disease categories stable disease, partial response and disease progression (p = 0.0001, p = 0.035 and p = 0.0025 for SMRP, pOPN and vimentin, respectively). Moreover, contingency table analysis showed statistically significant differences between clinical response and Δ of each marker clustered into 3 groups (<-20%, between -20% and +20%, >+20%). CONCLUSIONS: The time course of Δ SMRP and Δ vimentin was strongly associated with disease status, and so was the time course of pOPN, albeit to a lesser extent. These markers appear to be particularly effective in cases of partial response and disease progression, while their possible use in stable disease should be better investigated.


Subject(s)
Biomarkers, Tumor/blood , GPI-Linked Proteins/blood , Lung Neoplasms/pathology , Mesothelioma/pathology , Osteopontin/blood , Pleural Neoplasms/pathology , Vimentin/blood , Aged , Combined Modality Therapy , Disease Progression , Enzyme-Linked Immunosorbent Assay , Female , Follow-Up Studies , Humans , Lung Neoplasms/blood , Lung Neoplasms/therapy , Male , Mesothelin , Mesothelioma/blood , Mesothelioma/therapy , Mesothelioma, Malignant , Neoplasm Staging , Pleural Neoplasms/blood , Prognosis , ROC Curve , Survival Rate
4.
J Transl Med ; 14: 262, 2016 09 08.
Article in English | MEDLINE | ID: mdl-27608975

ABSTRACT

BACKGROUND: Systemic sclerosis (SSc) is an autoimmune disease characterized by progressive fibrosis of the skin and the internal organs. In a previous work we suggested a correlation between levels of salivary psoriasin (S100A7) and pulmonary involvement in SSc patients. The goals of this study are to determine the distribution characteristics of psoriasin in whole saliva (WS) of SSc and healthy donor populations and define its predictive value on diffusion capacity of carbon monoxide (DLCO), along with others clinical parameters. METHODS: Salivary level of psoriasin was determined by ELISA kit in 134 SSc patients, 63 Raynaud syndrome patients, 40 patients affected by other connective diseases (non-case) and 74 healthy control subjects. RESULTS: A significant increase of salivary psoriasin was observed in SSc patients when compared with other healthy and pathological controls. Moreover, we confirmed the efficacy of salivary psoriasin to correlate with DLCO in a large cohort of SSc patients. CONCLUSIONS: Overall our results suggest a rapid, non invasive and low costing method which can help clinicians in the evaluation of SSc pulmonary involvement.


Subject(s)
Carbon Monoxide/metabolism , S100 Proteins/metabolism , Saliva/metabolism , Scleroderma, Systemic/metabolism , Case-Control Studies , Cohort Studies , Diffusion , Female , Humans , Male , Middle Aged , ROC Curve , S100 Calcium Binding Protein A7
5.
EuPA Open Proteom ; 10: 42-49, 2016 Mar.
Article in English | MEDLINE | ID: mdl-29900099

ABSTRACT

Malignant pleural mesothelioma (MPM) is a rare cancer originated from pleural mesothelial cells. MPM has been associated with long-term exposure to asbestos. In this work we performed a comparative proteomic analysis of biphasic pleural mesothelioma (B-PM). Tissue biopsies were obtained from 61 patients who were subjected to a diagnostic thoracoscopy. 2D/MS based approach was used for proteomic analysis. The 22 proteins found differentially expressed in B-PM, with respect to benign, were analyzed by Ingenuity Pathways Analysis and compared with those obtained for epitheliod pleural mesothelioma (E-PM). A different activation of transcription factors, proteins and cytokines were observed between two subtypes.

6.
J Cell Mol Med ; 18(10): 1944-52, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25164318

ABSTRACT

The parathyroid glands play an overall regulatory role in the systemic calcium (Ca(2+)) homeostasis. The purpose of the present study was to demonstrate the presence of the Ca(2+) channels transient receptor potential vanilloid (TRPV) 5 and TRPV6 in human parathyroid glands. Semi-quantitative and quantitative PCR was carried out to evaluate the presence of TRPV5 and TRPV6 mRNAs in sporadic parathyroid adenomas and normal parathyroid glands. Western blot and immunocytochemical assays were used to assess protein expression, cellular localization and time expression in primary cultures from human parathyroid adenoma. TRPV5 and TRPV6 transcripts were then identified both in normal and pathological tissues. Predominant immunoreactive bands were detected at 75-80 kD for both vanilloid channels. These channels co-localized with the calcium-sensing receptor (CASR) on the membrane surface, but immunoreactivity was also detected in the cytosol and around the nuclei. Our data showed that western blotting recorded an increase of protein expression of both channels in adenoma samples compared with normal glands suggesting a potential relation with the cell calcium signalling pathway and the pathological processes of these glands.


Subject(s)
Adenoma/pathology , Calcium Channels/metabolism , Cell Transformation, Neoplastic/pathology , Hyperparathyroidism, Primary/pathology , Parathyroid Glands/metabolism , TRPV Cation Channels/metabolism , Adenoma/genetics , Adenoma/metabolism , Blotting, Western , Calcium/metabolism , Calcium Channels/genetics , Cell Membrane/metabolism , Cell Transformation, Neoplastic/genetics , Cell Transformation, Neoplastic/metabolism , Cells, Cultured , Humans , Hyperparathyroidism, Primary/genetics , Hyperparathyroidism, Primary/metabolism , Immunoenzyme Techniques , Parathyroid Glands/cytology , Patch-Clamp Techniques , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Receptors, Calcium-Sensing/genetics , Receptors, Calcium-Sensing/metabolism , Reverse Transcriptase Polymerase Chain Reaction , TRPV Cation Channels/genetics
7.
Mol Biosyst ; 10(6): 1246-54, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24554194

ABSTRACT

Data on neurobiological mechanisms underlying mood disorders are elusive; the aetiology of such states is multifactorial, including genetic predisposition and environmental factors. Diagnosis is currently being made only on an interview-based methodology. Biological markers, which could improve the current classification, and in perspective, stratify patients on a biological basis into more homogeneous clinically distinct subgroups, are highly needed. We describe here a comparative proteomic analysis of peripheral lymphocytes from patients affected by acute psychotic bipolar disorder (PBD) (n = 15), major depressive episode (MDE) with no personal or family history of psychosis (n = 11), and a group of demographically matched healthy controls (HC) (n = 15). All patients were evaluated by means of Structured Clinical Interview for DSM-IV-Patient version (SCID-I-P), Positive and Negative Symptoms Scale (PANSS), Young Mania Rating Scale (YMRS), Hamilton Anxiety Rating Scale (HAM-A) and Hamilton Depression Rating Scale (HAM-D-17) questionnaires. Blood lymphocytes were obtained by gradient separation, and 2-DE was carried out on protein extracts. Significant differences in protein patterns among the three groups were observed. Thirty-six protein spots were found to be differentially expressed in patients compared to controls, which collapsed into 25 different proteins after mass spectrometry identification. Twenty-one of these proteins failed to discriminate between PBD and MDE, suggesting common signatures for these disorders. Nevertheless, after the western blot validation only two of the remaining proteins, namely LIM and SH3 domain protein1, and short-chain specific acyl-CoA dehydrogenase mitochondrial protein, resulted in being significantly upregulated in PBD samples suggesting additional mechanisms that could be associated with the psychotic features of bipolar disorder.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Bipolar Disorder/blood , Bipolar Disorder/pathology , Butyryl-CoA Dehydrogenase/metabolism , Cytoskeletal Proteins/metabolism , Depressive Disorder, Major/blood , Depressive Disorder, Major/pathology , LIM Domain Proteins/metabolism , Adaptor Proteins, Signal Transducing/blood , Adaptor Proteins, Signal Transducing/genetics , Adult , Biomarkers/blood , Bipolar Disorder/metabolism , Butyryl-CoA Dehydrogenase/blood , Butyryl-CoA Dehydrogenase/genetics , Case-Control Studies , Cytoskeletal Proteins/blood , Cytoskeletal Proteins/genetics , Depressive Disorder, Major/metabolism , Female , Gene Expression Regulation , Humans , LIM Domain Proteins/blood , LIM Domain Proteins/genetics , Male , Middle Aged , Proteomics
8.
Proteomics Clin Appl ; 8(3-4): 258-68, 2014 Apr.
Article in English | MEDLINE | ID: mdl-24415579

ABSTRACT

PURPOSE: Malignant mesothelioma is a neoplastic disease linked to asbestos exposure whose diagnosis is limited, so detection methods for an early diagnosis and treatment result essential. Here, we compared proteomic profiles of malignant pleural mesothelioma (MPM) and benign biopsies to search potential biomarkers useful in differential diagnosis. EXPERIMENTAL DESIGN: Tissue biopsies were obtained from 53 patients who were subjected to a diagnostic thoracoscopy. 2DE/MS based approach was used for proteomic analysis and protein validation was carried out by Western blot analysis versus benign and lung carcinoma samples. RESULTS: Among the proteins identified we confirmed known MPM biomarkers such as calretinin and suggested the new ones as prelamin A/C, desmin, vimentin, calretinin, fructose-bisphosphate aldolase A, myosin regulatory light chain 2, ventricular/cardiac muscle isoform, myosin light chain 3 and myosin light chain 6B. Ingenuity software was used to identify the biological processes to which these proteins belong and to construct a potential network. CONCLUSIONS AND CLINICAL RELEVANCE: Overall, our results suggest potential biomarkers that can be useful in occupational medicine for the early identification of the onset of disease in health surveillance of past asbestos-exposed workers, for monitoring the progress of disease and for assessing the response to treatment.


Subject(s)
Biomarkers, Tumor/biosynthesis , Lung Neoplasms/genetics , Mesothelioma/genetics , Pleural Neoplasms/genetics , Proteomics , Adult , Aged , Aged, 80 and over , Asbestos/toxicity , Female , Gene Expression Regulation, Neoplastic , Gene Regulatory Networks , Humans , Lamin Type B/biosynthesis , Lung Neoplasms/chemically induced , Lung Neoplasms/pathology , Male , Mesothelioma/chemically induced , Mesothelioma/pathology , Mesothelioma, Malignant , Middle Aged , Neoplasm Proteins/biosynthesis , Pleural Neoplasms/chemically induced , Pleural Neoplasms/pathology
9.
PLoS One ; 8(8): e71874, 2013.
Article in English | MEDLINE | ID: mdl-24205396

ABSTRACT

Major salivary gland tumours are uncommon neoplasms of the head and neck. The increase of precise pre-operative diagnosis is crucial for their correct management and the identification of molecular markers would surely improve the required accuracy. In this study we performed a comparative proteomic analysis of fine needle aspiration fluids of the most frequent benign neoplasms of major salivary glands, namely pleomorphic adenoma and Warthin's tumour, in order to draw their proteomic profiles and to point out their significant features. Thirty-five patients submitted to parotidectomy were included in the study, 22 were identified to have pleomorphic adenoma and 14 Warthin's tumour. Fine needle aspiration samples were processed using a two-dimensional electrophoresis/mass spectrometry-based approach. A total of 26 differentially expressed proteins were identified. Ingenuity software was used to search the biological processes to which these proteins belong and to construct potential networks. Intriguingly, all Warthin's tumour up-regulated proteins such as Ig gamma-1 chain C region, Ig kappa chain C region and Ig alpha-1 chain C region and S100A9 were correlated to immunological and inflammatory diseases, while pleomorphic adenomas such as annexin A1, annexin A4, macrophage-capping protein, apolipoprotein E and alpha crystalline B chain were associated with cell death, apoptosis and tumorigenesis, showing different features of two benign tumours. Overall, our results shed new light on the potential usefulness of a proteomic approach to study parotid tumours and in particular up regulated proteins are able to discriminate two types of benign parotid lesions.


Subject(s)
Adenolymphoma/pathology , Adenoma, Pleomorphic/pathology , Proteome/analysis , Proteomics/methods , Salivary Gland Neoplasms/pathology , Salivary Glands/pathology , Adenolymphoma/metabolism , Adenoma, Pleomorphic/metabolism , Blotting, Western , Electrophoresis, Gel, Two-Dimensional , Humans , Mass Spectrometry , Salivary Gland Neoplasms/metabolism , Salivary Glands/metabolism , Up-Regulation
10.
J Transl Med ; 11: 243, 2013 Oct 02.
Article in English | MEDLINE | ID: mdl-24088505

ABSTRACT

BACKGROUND: Chronic Fatigue Syndrome (CFS) is a severe, systemic illness characterized by persistent, debilitating and medically unexplained fatigue. The etiology and pathophysiology of CFS remains obscure, and diagnosis is formulated through the patient's history and exclusion of other medical causes. Thereby, the availability of biomarkers for CFS could be useful for clinical research. In the present study, we used a proteomic approach to evaluate the global changes in the salivary profile in a couple of monozygotic twins who were discordant for CFS. The aim was to evaluate differences of salivary protein expression in the CFS patient in respect to his healthy twin. METHODS: Saliva samples were submitted to two-dimensional electrophoresis (2DE). The gels were stained with Sypro, and a comparison between CFS subject and the healthy one was performed by the software Progenesis Same Spot including the Analysis of variance (ANOVA test). The proteins spot found with a ≥2-fold spot quantity change and p<0.05 were identified by Nano-liquid chromatography electrospray ionization tandem mass spectrometry. To validate the expression changes found with 2DE of 5 proteins (14-3-3 protein zeta/delta, cyclophilin A, Cystatin-C, Protein S100-A7, and zinc-alpha-2-glycoprotein), we used the western blot analysis. Moreover, proteins differentially expressed were functionally analyzed using the Ingenuity Pathways Analysis software with the aim to determine the predominant canonical pathways and the interaction network involved. RESULTS: The analysis of the protein profiles allowed us to find 13 proteins with a different expression in CFS in respect to control. Nine spots were up-regulated in CFS and 4 down-regulated. These proteins belong to different functional classes, such as inflammatory response, immune system and metabolism. In particular, as shown by the pathway analysis, the network built with our proteins highlights the involvement of inflammatory response in CFS pathogenesis. CONCLUSIONS: This study shows the presence of differentially expressed proteins in the saliva of the couple of monozygotic twins discordant for CFS, probably related to the disease. Consequently, we believe the proteomic approach could be useful both to define a panel of potential diagnostic biomarkers and to shed new light on the comprehension of the pathogenetic pathways of CFS.


Subject(s)
Biomarkers/metabolism , Fatigue Syndrome, Chronic/metabolism , Interdisciplinary Communication , Saliva/metabolism , Adult , Blotting, Western , Cognition , Electrophoresis, Gel, Two-Dimensional , Fatigue Syndrome, Chronic/physiopathology , Fatigue Syndrome, Chronic/virology , Humans , Male , Mass Spectrometry , Proteomics , Reproducibility of Results , Signal Transduction , Surveys and Questionnaires , Twins, Monozygotic
11.
Nephrol Dial Transplant ; 27(7): 2826-38, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22422869

ABSTRACT

BACKGROUND: The aim of this study was to compare two methods used to measure serum cystatin C (Cys) and their accuracy to predict glomerular filtration rate (GFR). METHODS: Three hundred and sixty-seven adult chronic kidney disease (CKD) patients with different functional impairments participated in this study. GFR was determined as the renal clearance of 99mTc-DTPA. Serum concentrations of cystatin C (SCys) were determined with an immunonephelometric method and with an immunoturbidimetric method. RESULTS: A very high linear correlation was found between the two measurements of SCys (r=0.929). The mean difference of SCysTurb-SCysNeph was 0.02±0.43 mg/L (not significant). A high logarithmic correlation was also found between SCys and GFR (r was 0.919 for SCysNeph and 0.937 for SCysTurb). By means of multiple regression analysis, we developed formulae to predict GFR from SCysNeph, SCysTurb and SCr. For comparison, GFR was predicted using published formulae. A good agreement was found between predicted GFR and measured GFR. The results showed that the accuracy of SCysNeph, SCysTurb and SCr and of the different prediction formulae were quite similar. CONCLUSIONS: The immunoturbidimetric method seems adequate to measure SCys and to predict GFR and its impairment in CKD, at least similar to the immunonephelometric method. The accuracy of SCys and of derived formulae was not higher than that of SCr and SCr-based formulae.


Subject(s)
Creatinine/blood , Cystatin C/blood , Glomerular Filtration Rate , Kidney Function Tests/methods , Renal Insufficiency, Chronic/blood , Renal Insufficiency, Chronic/diagnosis , Adolescent , Adult , Aged , Aged, 80 and over , Disease Progression , Female , Follow-Up Studies , Humans , Male , Middle Aged , Prognosis , Radiopharmaceuticals , Risk Factors , Technetium Tc 99m Pentetate , Young Adult
12.
Mol Biosyst ; 8(4): 1088-99, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22294321

ABSTRACT

Washing fluid (WF) from the colon rectal tract after surgical resection might represent a first step in obtaining a mixture of proteins derived from the secretion of tumoral epithelial cells potentially involved in the pathological progression of tissue. In this study, we performed a proteomic analysis of colorectal WF to search for potential biomarkers of colon cancer. The outcome of this approach might open the possibility of using WF to screen for the precancerous and early stages of colorectal cancer (CRC). Samples of WFs were obtained during surgery from 35 patients submitted to colon resection for suspicious adenocarcinoma or carcinoma, while the respective controls were obtained by washing the healthy sections. WFs were immediately centrifuged, concentrated and trichloroacetic acid (TCA) was added to obtain protein pellets. After two-dimensional gel electrophoresis (2DE), the protein patterns of malignant samples were compared with respective normal samples. Forty-one protein spots were found to be differentially expressed exhibiting ≥2 fold-change of mean value spot intensities. After mass spectrometry, these protein spots collapsed into 38 different proteins. Interestingly, 19 of the differentially expressed proteins identified in the study corresponded to those suggested as being potential biomarkers of CRC. In accordance with the literature, these proteins showed the same direction of change (up or down for all proteins). Our results suggest that WF has the potential of being a method for the exploration of clinical samples for biomarker and drug target discovery.


Subject(s)
Biomarkers, Tumor/analysis , Colon/pathology , Colonic Neoplasms/pathology , Gene Expression Profiling/methods , Proteomics/methods , Adenosylhomocysteinase/genetics , Adenosylhomocysteinase/metabolism , Aged , Aged, 80 and over , Colonic Neoplasms/genetics , Colonic Neoplasms/metabolism , Electrophoresis, Gel, Two-Dimensional/methods , Female , Humans , Immunoglobulin kappa-Chains/genetics , Immunoglobulin kappa-Chains/metabolism , Male , Middle Aged , Proliferating Cell Nuclear Antigen/genetics , Proliferating Cell Nuclear Antigen/metabolism , Reproducibility of Results , Selenium-Binding Proteins/genetics , Selenium-Binding Proteins/metabolism , Tandem Mass Spectrometry , alpha 1-Antitrypsin/genetics , alpha 1-Antitrypsin/metabolism
13.
Clin Chim Acta ; 413(3-4): 391-5, 2012 Feb 18.
Article in English | MEDLINE | ID: mdl-22120732

ABSTRACT

Albumin is the most important antioxidant substance in plasma and performs many physiological functions. Furthermore, albumin is the major carrier of endogenous molecules and exogenous ligands. This paper reviews the importance of post-translational modifications of albumin and fragments thereof in patients with renal disease. First, current views and controversies on renal handling of proteins, mainly albumin, will be discussed. Post-translational modifications, namely the fragmentation of albumin found with proteomic techniques in nephrotic patients, diabetics, and ESRD patients will be presented and discussed. It is reasonable to hypothesize that proteolytic fragmentation of serum albumin is due to a higher susceptibility to proteases, induced by oxidative stress. The clinical relevance of the fragmentation of albumin has not yet been established. These modifications could affect some physiological functions of albumin and have a patho-physiological role in uremic syndrome. Proteomic analysis of serum allows the identification of over-expressed proteins and can detect post-translational modifications of serum proteins, hitherto hidden, using standard laboratory techniques.


Subject(s)
Kidney Diseases/metabolism , Protein Processing, Post-Translational , Proteolysis , Serum Albumin/metabolism , Humans , Kidney/metabolism , Molecular Weight , Serum Albumin/chemistry
14.
J Transl Med ; 9: 188, 2011 Nov 02.
Article in English | MEDLINE | ID: mdl-22047044

ABSTRACT

BACKGROUND: In the last years human proteomic has represented a promising tool to promote the communication between basic and clinical science. METHODS: To explore the correspondence between salivary proteomic profile and clinical response, herein, we used a proteomic approach to analyse the whole saliva of a patient with primary Sjögren's Syndrome (pSS) and non-Hodgkin's-MALT type parotid lymphoma before, during and after a standard treatment with cyclophosphamide (CTX) and rituximab (RTX). To identify any discriminatory therapeutic salivary biomarker patient's whole saliva was collected at the baseline, after the fourth infusion of rituximab, and on remission and analysed combining two-dimensional electrophoresis (2DE) and MALDI-TOF/TOF mass spectrometry. RESULTS: Proteomic results obtained from the comparison of salivary samples indicated several qualitative and quantitative modifications in the salivary expression of putative albumin, immunoglobulin J chain, Ig kappa chain C region, alpha-1-antitrypsin, haptoglobin and Ig alpha-1 chain C region. CONCLUSION: This study suggests that clinical and functional changes of the salivary glands driven by autoimmune and lymphoproliferative processes might be reflected in patients' whole saliva proteins, shedding new light on the potential usefulness of salivary proteomic analysis in the identification of prognostic and therapeutic biomarkers for patients with pSS and non Hodgkin's lymphomas.


Subject(s)
Disease Progression , Lymphoma, Non-Hodgkin/metabolism , Lymphoma, Non-Hodgkin/pathology , Proteome/metabolism , Salivary Proteins and Peptides/metabolism , Sjogren's Syndrome/metabolism , Sjogren's Syndrome/pathology , Electrophoresis, Gel, Two-Dimensional , Female , Humans , Middle Aged , Parotid Gland/metabolism , Parotid Gland/pathology , Proteome/chemistry , Salivary Proteins and Peptides/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
15.
Arthritis Res Ther ; 13(6): R194, 2011.
Article in English | MEDLINE | ID: mdl-22117835

ABSTRACT

INTRODUCTION: A growing interest has arisen in salivary proteomics as a tool for the identification of biomarkers for primary Sjögren's syndrome (pSS). Nonetheless, only a limited number of preclinical validation studies have been performed, limiting the possibility of translating proteomic results into clinical practice. The primary aim of this study was to refine the diagnostic power of a panel of candidate salivary biomarkers described in pSS with respect to both healthy volunteers and pathological controls. We also explored the pathogenetic function of the detected putative biomarkers both in the local exocrinopathy and in the systemic inflammatory processes of SS. METHODS: One hundred and eighty patients were included in the study overall. In the first "exploratory phase", we enrolled 40 females with pSS, 40 sex- and age-matched healthy volunteers, 10 patients with sicca non-SS and 15 secondary SS (sSS) patients. The testing cohort of the second "challenge phase" of the study was represented by 75 unselected, consecutive subjects: 19 pSS, 21 healthy volunteers, 10 sicca non-SS and 25 sSS patients. Salivary proteomic analysis was performed combining two-dimensional electrophoresis (2DE) and matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry (MALDI-TOF-MS). Western blot (WB) analysis and enzyme-linked immunosorbent assay (ELISA) were employed to validate 2DE results. Ingenuity Pathway Analysis (IPA) Knowledge base was adopted to associate candidate biomarkers in a signalling pathogenetic network. RESULTS: A total of 28, 6, 7 and 12 protein spots were found to be significantly different in pSS samples with respect to healthy volunteers, non-SS sicca syndrome, SSc-sSS and rheumatoid arthritis-sSS, leading to the identification of 15 differently expressed proteins. Among them, α-amylases precursor, carbonic anhydrase VI, ß-2 microglobulin, glyceraldehydes-3-phosphate dehydrogenase (G3PDH), epidermal fatty acid binding protein (E-FABP) and immunoglobulin k light chain (IGK-light chain) apparently showed the most significant differences in pSS when compared to healthy volunteers and non-SS pathological controls. On the other hand, as expected, pSS and sSS salivary profiles shared a great number of similarities. CONCLUSIONS: This study demonstrated that salivary fluid might represent a novel ideal milieu for the detection of a diagnostic panel of candidate biomarkers for pSS, and to gain an insight into the pathogenetic processes underlying glandular and systemic autoimmune disorders.


Subject(s)
Proteome/analysis , Proteomics/methods , Saliva/metabolism , Sjogren's Syndrome/metabolism , Adult , Aged , Arthritis, Rheumatoid/complications , Blotting, Western , Case-Control Studies , Cluster Analysis , Diagnosis, Differential , Electrophoresis, Gel, Two-Dimensional , Female , Humans , Immunoglobulin Light Chains/metabolism , Immunoglobulin kappa-Chains/metabolism , Middle Aged , Models, Biological , Phosphopyruvate Hydratase/metabolism , Principal Component Analysis , Scleroderma, Systemic/complications , Signal Transduction , Sjogren's Syndrome/diagnosis , Sjogren's Syndrome/etiology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , alpha-Amylases/metabolism , beta 2-Microglobulin/metabolism
16.
Proteome Sci ; 9(1): 29, 2011 Jun 08.
Article in English | MEDLINE | ID: mdl-21651755

ABSTRACT

BACKGROUND: Proteomic research in the field of parathyroid tissues is limited by the very small dimension of the glands and by the low incidence of cancer lesions (1%). Formalin-fixed paraffin-embedded (FFPE) tissue specimens are a potentially valuable resource for discovering protein cancer biomarkers. In this study we have verified the applicability of a heat induced protein extraction from FFPE parathyroid adenoma tissues followed by a gel-based or gel-free proteomic approach in order to achieve protein separation and identification. RESULTS: The best results for high quality MS spectra and parameters, were obtained by using a gel-free approach, and up to 163 unique proteins were identified. Similar results were obtained by applying both SDS-out and SDS-out + TCA/Acetone techniques during the gel-free method. Western blot analysis carried out with specific antibodies suggested that the antigenicity was not always preserved, while specific immunoreactions were detected for calmodulin, B box and SPRY domain-containing protein (BSPRY), peroxiredoxin 6 (PRDX 6) and parvalbumin. CONCLUSIONS: In spite of some limitations mainly due to the extensive formalin-induced covalent cross-linking, our results essentially suggest the applicability of a proteomic approach to FFPE parathyroid specimens. From our point of view, FFPE extracts might be an alternative source, especially in the validation phase of protein biomarkers when a large cohort of samples is required and the low availability of frozen tissues might be constraining.

17.
Mol Biosyst ; 7(3): 687-99, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21180715

ABSTRACT

Parathyroid tumours are heterogeneous and in some cases the diagnosis may be difficult using histological features. In this study we used a two-dimensional electrophoresis (2D)/mass spectrometry (MS)-based approach to examine the global changes of parathyroid adenoma tissues protein profile compared to the parathyroid normal tissues. Validation of protein expression was performed by immunoblotting using specific antibodies. Ingenuity software was used to identify the biological processes to which these proteins belong and to construct a potential network. A total of 30 proteins were found to be differentially expressed, of which 22 resulted in being over-expressed. Proteins identified by 2D/MS/MS proteomics were classified into functional categories and a major change (≥ 2-fold) in terms of expression was found in proteins involved in response to biotic stimuli, cell organization and signal transduction. After Ingenuity analysis, 14-3-3 ζ/δ appears to be a key protein in the network of parathyroid adenoma, where it is linked to other proteins such as annexin A2, B box and SPRY domain-containing protein (BSPRY), p53 and epidermal growth factor receptor (EGFR). Our results suggest that the proteomic approach was able to differentiate the protein profiles of normal parathyroid and parathyroid adenoma and identify a panel of proteins which are differentially expressed. The functional role of these proteins in the network of intracellular pathways is discussed.


Subject(s)
Parathyroid Glands/metabolism , Parathyroid Neoplasms/metabolism , Proteins/metabolism , Proteomics/methods , Electrophoresis, Gel, Two-Dimensional , Humans , Mass Spectrometry , Parathyroid Glands/chemistry , Parathyroid Neoplasms/chemistry , Parathyroid Neoplasms/diagnosis , Proteins/analysis , Software
18.
Clin Chem Lab Med ; 47(11): 1373-9, 2009.
Article in English | MEDLINE | ID: mdl-19778290

ABSTRACT

BACKGROUND: The goal of this study was to detect modification in the expression of plasma proteins and/or post-translational modifications of their structure in patients with end stage renal disease. METHODS: Serum samples from 19 adult patients treated by maintenance hemodialysis (MHD) were analyzed in comparison to sera from six healthy controls using sodium dodecylsulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and two-dimensional electrophoresis (2DE). Spots of interest were identified by mass spectrometry analysis. In addition, the 2DE maps were incubated with a human anti-albumin polyclonal antibody. RESULTS: SDS-PAGE gels, 2DE maps and matrix-assisted laser desorption/ionization time of flight analysis indicated over-expression of low-molecular weight proteins (LMWP) in sera from patients. Unexpectedly, another 15 spots with estimated M(r) of 12.5-29 kDa from the 2DE maps of six patients were identified as fragments of albumin. 2D immunoblotting of sera from 12 other patients detected numerous albumin fragments. CONCLUSIONS: These results indicate that in addition to increased expression of LMWP, a relevant amount of albumin fragments are detectable in the serum of patients undergoing MHD. Uremia appears to facilitate the fragmentation of albumin and/or the retention of albumin fragments in blood.


Subject(s)
Kidney Failure, Chronic/blood , Kidney Neoplasms/blood , Serum Albumin/analysis , Adult , Aged , Aged, 80 and over , Electrophoresis, Polyacrylamide Gel , Humans , Kidney Function Tests , Middle Aged , Pilot Projects , Renal Dialysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
19.
FEMS Microbiol Lett ; 269(1): 77-84, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17227460

ABSTRACT

An expressed sequence tag database of the freshwater fish parasite, Ichthyophthirius multifiliis (Ciliophora) was analyzed to seek for proteases potentially involved in the invasion and degradation of host tissues during infection. The translation of the database revealed two cathepsin L cysteine proteases (Icp1 and Icp2) of the C1A peptidase subfamily. The analysis of Icp1 and Icp2 sequences suggested that both proteases would be synthesized as preproproteins, with a mature domain of 27.9 and 22.8 kDa, respectively. Their expression level was determined in the trophont parasitic stage, in the tomont reproductive stage, and in the theront infective stage by real-time RT-PCR. ICP1 and ICP2 were significantly upregulated in trophont and theront stages in comparison with the tomont stage. Mature peptides of Icp1 and Icp2 were identified in crude extracts of I. multifiliis trophonts by LC-MS/MS. Zymograms showed three to seven activity bands at the optimum pH of cathepsin L cysteine proteases. Two bands displaying cysteine protease activity were identified by inhibition with E-64. They represented the major proteolytic activity of the trophont stage at pH 5-7, suggesting that cysteine proteases play an important role in the infection process.


Subject(s)
Cysteine Endopeptidases/metabolism , Hymenostomatida/enzymology , Protozoan Proteins/metabolism , Amino Acid Sequence , Animals , Chromatography, Liquid , Cysteine Endopeptidases/genetics , Cysteine Endopeptidases/physiology , Electrophoresis, Polyacrylamide Gel , Expressed Sequence Tags , Gene Expression Regulation , Gene Library , Hymenostomatida/growth & development , Hymenostomatida/pathogenicity , Mass Spectrometry , Molecular Sequence Data , Protozoan Proteins/genetics , Protozoan Proteins/physiology , Reverse Transcriptase Polymerase Chain Reaction , Sequence Alignment , Sequence Analysis, Protein
20.
Parasitol Res ; 100(6): 1281-5, 2007 May.
Article in English | MEDLINE | ID: mdl-17219221

ABSTRACT

Immunocytochemistry was used to identify possible target antigens in the digestive system of Psoroptes cuniculi. Sera from three recently acutely infested rabbits, from rabbits with a mild long lasting infestation, and from a rabbit with repeated mite infestations and no longer able to maintain a population of P. cuniculi were used to determine any antibody specificity to the mite digestive system. The reactivity of these sera was compared with sera from three un-infested animals. The different pool of sera targeted different mite antigens; in particular, sera from the resistant rabbit and the chronically infested rabbits reacted with gut cells, faecal material and cuticle, while sera from the recently infested rabbits reacted with gut contents, faecal material and cuticle of the parasites but not with gut cells. Finally, sera from un-infested rabbits did not demonstrate any specificity to P. cuniculi antigens reacting only with mite gut contents in a weak manner. These preliminary data suggest the presence of antibodies induced in the host blood by infection, which act against the parasite by binding to antigen at the surface of its gut.


Subject(s)
Animal Diseases/immunology , Immunohistochemistry/methods , Mite Infestations/veterinary , Psoroptidae/immunology , Rabbits/immunology , Rabbits/parasitology , Animal Diseases/parasitology , Animals , Mite Infestations/parasitology , Psoroptidae/anatomy & histology , Psoroptidae/cytology , Rabbits/blood , Staining and Labeling
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