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1.
J Agric Food Chem ; 70(22): 6617-6623, 2022 Jun 08.
Article in English | MEDLINE | ID: mdl-35617526

ABSTRACT

Pesticides are widely used agrochemicals for crop protection. The need for novel pesticides becomes urgent as a result of the emergence of resistance and environmental toxicity. Pesticide informatics has been applied in different phase processes of pesticide target identification, active ingredient design, and impact evaluation. However, these valuable resources are scattered over the literature and web, limiting their availability. Here, we summarize and connect research on pesticide informatics resources. A pesticide informatics platform (PIP) was constructed to share these tools. We finally discuss the future direction of pesticide informatics, including pesticide contamination. We expect to share the pesticide informatics approaches and stimulate further research.


Subject(s)
Pesticide Residues , Pesticides , Agrochemicals/analysis , Crop Protection , Informatics , Pesticide Residues/analysis , Pesticides/chemistry
2.
Brief Bioinform ; 22(6)2021 11 05.
Article in English | MEDLINE | ID: mdl-34098581

ABSTRACT

The grand challenge to meet the increasing demands for food by a rapidly growing global population requires protecting crops from pests. Natural active substances play a significant role in the sustainable pests and pathogenic microbes management. In recent years, natural products- (NPs), antimicrobial peptides- (AMPs), medicinal plant- and plant essential oils (EOs)-related online resources have greatly facilitated the development of pests and pathogenic microbes control agents in an efficient and economical manner. However, a comprehensive comparison, analysis and summary of these existing web resources are still lacking. Here, we surveyed these databases of NPs, AMPs, medicinal plants and plant EOs with insecticidal, antibacterial, antiviral and antifungal activity, and we compared their functionality, data volume, data sources and applicability. We comprehensively discussed the limitation of these web resources. This study provides a toolbox for bench scientists working in the pesticide, botany, biomedical and pharmaceutical engineering fields. The aim of the review is to hope that these web resources will facilitate the discovery and development of potential active ingredients of pests and pathogenic microbes control agents.


Subject(s)
Anti-Infective Agents , Biological Products , Databases, Factual , Pest Control , Web Browser , Agriculture , Animals , Anti-Infective Agents/chemistry , Anti-Infective Agents/pharmacology , Antimicrobial Peptides/chemistry , Antimicrobial Peptides/pharmacology , Biological Products/chemistry , Biological Products/pharmacology , Computational Biology/methods , Drug Development , Humans , Infection Control , Pest Control/methods , Plants, Medicinal
3.
Trends Plant Sci ; 26(9): 953-967, 2021 09.
Article in English | MEDLINE | ID: mdl-34039514

ABSTRACT

Food loss due to pathogens is a major concern in agriculture, requiring the need for advanced disease detection and prevention measures to minimize pathogen damage to plants. Novel bioinformatic tools have opened doors for the low-cost rapid identification of pathogens and prevention of disease. The number of these tools is growing fast and a comprehensive and comparative summary of these resources is currently lacking. Here, we review all current bioinformatic tools used to identify the mechanisms of pathogen pathogenicity, plant resistance protein identification, and the detection and treatment of plant disease. We compare functionality, data volume, data sources, performance, and applicability of all tools to provide a comprehensive toolbox for researchers in plant disease management.


Subject(s)
Computational Biology , Plant Diseases , Plant Diseases/prevention & control , Plant Proteins , Plants
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