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1.
Sci Rep ; 9(1): 7959, 2019 May 28.
Article in English | MEDLINE | ID: mdl-31138884

ABSTRACT

The prediction of magnetic skyrmions being used to change the way we store and process data has led to materials with Dzyaloshinskii-Moriya interaction coming into the focus of intensive research. So far, studies have looked mostly at magnetic systems composed of materials with single chirality. In a search for potential future spintronic devices, combination of materials with different chirality into a single system may represent an important new avenue for research. Using finite element micromagnetic simulations, we study an FeGe disk with two layers of different chirality. We show that for particular thicknesses of layers, a stable Bloch point emerges at the interface between two layers. In addition, we demonstrate that the system undergoes hysteretic behaviour and that two different types of Bloch point exist. These 'head-to-head' and 'tail-to-tail' Bloch point configurations can, with the application of an external magnetic field, be switched between. Finally, by investigating the time evolution of the magnetisation field, we reveal the creation mechanism of the Bloch point. Our results introduce a stable and manipulable Bloch point to the collection of particle-like state candidates for the development of future spintronic devices.

2.
Biochemistry ; 41(7): 2158-65, 2002 Feb 19.
Article in English | MEDLINE | ID: mdl-11841206

ABSTRACT

Glycidaldehyde is an industrial chemical which has been shown to be genotoxic in in vitro experiments and carcinogenic in rodent studies. It is a bifunctional alkylating agent capable of reacting with DNA to form exocyclic hydroxymethyl-substituted ethenobases. In this work, 8-(hydroxymethyl)-3,N4-etheno-2'-deoxycytidine (8-HM-epsilondC), a potential nucleoside derivative of glycidaldehyde, was synthesized using phosphoramidite chemistry and site-specifically incorporated into a defined 25-mer oligodeoxynucleotide. The 8-HM-epsilonC adduct is structurally related to 3,N4-ethenocytosine (epsilonC), a product of reaction with vinyl chloride or through lipid peroxidation. In Escherichia coli, epsilonC has been shown previously to be a primary substrate for the mismatch uracil-DNA glycosylase (Mug). In this study, we report that the same glycosylase also acts on 8-HM-epsilonC in an oligonucleotide duplex. The enzyme binds to the 8-HM-epsilonC-oligonucleotide to a similar extent as the epsilonC-oligonucleotide. The Mug excision activity toward 8-HM-epsilonC is approximately 2.5-fold lower than that toward the epsilonC substrate. Both activities can be stimulated up to approximately 2-fold higher by the addition of E. coli endonuclease IV. These two adducts, when mispaired with normal bases, were all excised from DNA by Mug with similar efficiencies. Structural studies using molecular simulations showed similar adjustment and hydrogen bonding pattern for both 8-HM-epsilonC*G and epsilonC*G pairs in oligomer duplexes. We believe that these findings may have biological and structural implications in defining the role of 8-HM-epsilonC in glycosylase recognition/repair.


Subject(s)
Aldehydes/chemistry , Base Pair Mismatch , Cytosine/analogs & derivatives , Cytosine/chemistry , DNA Adducts/chemistry , DNA Repair , Epoxy Compounds/chemistry , Escherichia coli/enzymology , N-Glycosyl Hydrolases/chemistry , Thymine DNA Glycosylase , Aldehydes/metabolism , Alkylating Agents/chemistry , Carcinogens/chemistry , Cytosine/metabolism , DNA Adducts/metabolism , DNA, Single-Stranded/chemistry , Epoxy Compounds/metabolism , Models, Molecular , Mutagens/chemistry , N-Glycosyl Hydrolases/metabolism , Nucleic Acid Conformation , Nucleic Acid Heteroduplexes/chemistry , Protein Binding
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