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1.
Brain ; 147(6): 2053-2068, 2024 Jun 03.
Article in English | MEDLINE | ID: mdl-38739752

ABSTRACT

Aggregation of the RNA-binding protein TAR DNA binding protein (TDP-43) is a hallmark of TDP-proteinopathies including amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). As TDP-43 aggregation and dysregulation are causative of neuronal death, there is a special interest in targeting this protein as a therapeutic approach. Previously, we found that TDP-43 extensively co-aggregated with the dual function protein GEF (guanine exchange factor) and RNA-binding protein rho guanine nucleotide exchange factor (RGNEF) in ALS patients. Here, we show that an N-terminal fragment of RGNEF (NF242) interacts directly with the RNA recognition motifs of TDP-43 competing with RNA and that the IPT/TIG domain of NF242 is essential for this interaction. Genetic expression of NF242 in a fruit fly ALS model overexpressing TDP-43 suppressed the neuropathological phenotype increasing lifespan, abolishing motor defects and preventing neurodegeneration. Intracerebroventricular injections of AAV9/NF242 in a severe TDP-43 murine model (rNLS8) improved lifespan and motor phenotype, and decreased neuroinflammation markers. Our results demonstrate an innovative way to target TDP-43 proteinopathies using a protein fragment with a strong affinity for TDP-43 aggregates and a mechanism that includes competition with RNA sequestration, suggesting a promising therapeutic strategy for TDP-43 proteinopathies such as ALS and FTD.


Subject(s)
Amyotrophic Lateral Sclerosis , DNA-Binding Proteins , Disease Models, Animal , Guanine Nucleotide Exchange Factors , Phenotype , Animals , Amyotrophic Lateral Sclerosis/metabolism , Amyotrophic Lateral Sclerosis/genetics , Amyotrophic Lateral Sclerosis/pathology , DNA-Binding Proteins/metabolism , DNA-Binding Proteins/genetics , Mice , Humans , Guanine Nucleotide Exchange Factors/metabolism , Guanine Nucleotide Exchange Factors/genetics , Drosophila , Mice, Transgenic , Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Male
3.
Front Cell Dev Biol ; 9: 621779, 2021.
Article in English | MEDLINE | ID: mdl-34095105

ABSTRACT

Stress granules (SGs) are phase-separated, membraneless, cytoplasmic ribonucleoprotein (RNP) assemblies whose primary function is to promote cell survival by condensing translationally stalled mRNAs, ribosomal components, translation initiation factors, and RNA-binding proteins (RBPs). While the protein composition and the function of proteins in the compartmentalization and the dynamics of assembly and disassembly of SGs has been a matter of study for several years, the role of RNA in these structures had remained largely unknown. RNA species are, however, not passive members of RNA granules in that RNA by itself can form homo and heterotypic interactions with other RNA molecules leading to phase separation and nucleation of RNA granules. RNA can also function as molecular scaffolds recruiting multivalent RBPs and their interactors to form higher-order structures. With the development of SG purification techniques coupled to RNA-seq, the transcriptomic landscape of SGs is becoming increasingly understood, revealing the enormous potential of RNA to guide the assembly and disassembly of these transient organelles. SGs are not only formed under acute stress conditions but also in response to different diseases such as viral infections, cancer, and neurodegeneration. Importantly, these granules are increasingly being recognized as potential precursors of pathological aggregates in neurodegenerative diseases. In this review, we examine the current evidence in support of RNA playing a significant role in the formation of SGs and explore the concept of SGs as therapeutic targets.

4.
Sci Rep ; 9(1): 19928, 2019 12 27.
Article in English | MEDLINE | ID: mdl-31882736

ABSTRACT

Amyotrophic lateral sclerosis (ALS) is a devastating progressive neurodegenerative disease with no known etiology. The formation of pathological protein inclusions, including RNA-binding proteins such as TDP-43 and rho guanine nucleotide exchange factor (RGNEF) are a hallmark of ALS. Despite intensive research, the mechanisms behind protein aggregate formation in ALS remains unclear. We have investigated the role of metabolic stress in protein aggregate formation analyzing how it is relevant to the co-aggregation observed between RGNEF and TDP-43 in motor neurons of ALS patients. Metabolic stress was able to induce formation of micronuclei, small nuclear fragments, in cultured cells. Notably, we observed the formation TDP-43 protein inclusions within micronuclei that co-aggregate with RGNEF and can be released to the cytoplasm. We observed that the leucine-rich domain of RGNEF is critical for its interaction with TDP-43 and localization in micronuclei. Finally, we described that micronuclei-like structures can be found in brain and spinal cord of ALS patients. This work is the first description of protein inclusion formation within micronuclei which also is linked with a neurodegenerative disease. The formation of TDP-43 inclusions within micronuclei induced by metabolic stress is a novel mechanism of protein aggregate formation which may have broad relevance for ALS and other neurodegenerative diseases.


Subject(s)
Amyotrophic Lateral Sclerosis/metabolism , DNA-Binding Proteins/metabolism , Amyotrophic Lateral Sclerosis/genetics , Animals , Blotting, Western , DNA-Binding Proteins/genetics , Female , Fluorescent Antibody Technique , HEK293 Cells , Humans , Immunoprecipitation , Inclusion Bodies/metabolism , Motor Neurons/metabolism , Neurodegenerative Diseases/metabolism , Rats , Reactive Oxygen Species/metabolism , Spinal Cord/metabolism
5.
Eur J Cell Biol ; 98(1): 27-35, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30482479

ABSTRACT

Rho Guanine Nucleotide Exchange Factor (RGNEF) is a 190 kDa protein implicated in both amyotrophic lateral sclerosis (ALS) and cancer. Under normal physiological conditions, RGNEF is predominantly cytoplasmic with moderate levels of nuclear localization. We have identified a 23-amino acid region containing a bipartite nuclear localization signal (NLS) within the Pleckstrin Homology (PH) domain of RGNEF, which when deleted or mutated abolishes the nuclear localization of this protein. Fusion proteins containing only the PH domain demonstrated that this region by itself is able to translocate a 160 kDa protein to the nucleus. Interestingly, we also detected a nuclear export signal (NES) within the linker region of this bipartite NLS which is able to export from the nucleus a fusion protein containing two NLSs. Experiments using Leptomycin-B -an inhibitor of nuclear export- confirmed that this region promotes nuclear export in an exportin-1 dependent manner. This study is the first report demonstrating either of these signals embedded within a PH domain. Notably, this is also the first description of a functional overlapped NLS/NES signal.


Subject(s)
Cell Nucleus/metabolism , Guanine Nucleotide Exchange Factors/chemistry , Guanine Nucleotide Exchange Factors/metabolism , Nuclear Export Signals , Nuclear Localization Signals/metabolism , Pleckstrin Homology Domains , Amino Acid Sequence , HEK293 Cells , Humans , Karyopherins/metabolism , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Protein Transport , Receptors, Cytoplasmic and Nuclear/metabolism , Structure-Activity Relationship , Exportin 1 Protein
6.
Mol Cell Neurosci ; 82: 88-95, 2017 07.
Article in English | MEDLINE | ID: mdl-28495450

ABSTRACT

Rho guanine nucleotide exchange factor (RGNEF) is a 190kDa RNA binding protein (RBP) that also contains a Dbl/PH domain capable of RhoA activation. Consistent with a key role in the pathogenesis of amyotrophic lateral sclerosis (ALS), RGNEF forms pathological neuronal cytoplasmic inclusions in degenerating spinal motor neurons. To further understand the role of RGNEF in the stress response, we first observed that the expression of RGNEF is upregulated in murine spinal motor neurons following distal sciatic nerve injury. Secondly, in response to in vitro cellular stress (500µM sodium arsenite for 1h; or 400mM sorbitol 1 hour exposure; as an oxidative or osmotic stress, respectively), we observed a significant survival benefit in RGNEF-transfected HEK293T cells. Using deletion constructs, we found that the NH2-terminus domain is essential for this protective effect. Interestingly, we observed that under stress conditions RGNEF associates with Staufen1 positive granules but not TIA-1-positive stress granules. These findings support the hypothesis that RGNEF plays a critical role both in RNA homeostasis and in the response to cell stress.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Motor Neurons/metabolism , Stress, Physiological , ras-GRF1/metabolism , Animals , Arsenites/pharmacology , HEK293 Cells , Homeostasis/physiology , Humans , Inclusion Bodies/metabolism , Mice, Inbred C57BL , RNA/metabolism , Sodium Compounds/pharmacology
7.
Front Mol Neurosci ; 10: 127, 2017.
Article in English | MEDLINE | ID: mdl-28522960

ABSTRACT

MiRNAs are key regulators of the mammalian transcriptome that have been increasingly linked to degenerative diseases of the motor neurons. Although many of the miRNAs currently incriminated as participants in the pathogenesis of these diseases are also important to the normal development and function of motor neurons, at present there is no knowledge of the complete miRNA profile of motor neurons. In this review, we examine the current understanding with respect to miRNAs that are specifically required for motor neuron development, function and viability, and provide evidence that these should be considered as a functional network of miRNAs which we have collectively termed MotomiRs. We will also summarize those MotomiRs currently known to be associated with both amyotrophic lateral sclerosis (ALS) and spinal muscular atrophy (SMA), and discuss their potential use as biomarkers.

8.
Curr Vasc Pharmacol ; 14(1): 106-15, 2016.
Article in English | MEDLINE | ID: mdl-26463982

ABSTRACT

Angiogenesis is a key process by which new capillary blood vessels are formed, sustaining the supply of oxygen and other nutrients to the body allowing its growth and wound healing, among others. However, angiogenesis also associates with pathological processes, such us tumor growth. Vascular endothelial cells produce different matrix remodeling enzymes such as matrix metalloproteinases and a-disintegrin and metalloproteinases, which have both positive and negative effects on angiogenesis, regulating the cell environment and signaling. However, little is known about the regulation of the activity of these proteases during vascular development. Reversion-inducing cysteine-rich protein with Kazal motifs (RECK) is a membrane-anchored inhibitor of different matrix metalloproteinases and a-disintegrin and metalloproteinases, being a critical regulator of extracellular matrix remodeling and signaling pathway, particularly Notch, which is critical for the maturation of the growing vessels. Reck knockout mice die in utero showing vascular developmental defects and massive hemorrhages. These defects were not observed in knockout mice for secreted-soluble matrix metalloproteinase inhibitors pointing to an exclusive role of RECK in vascular development and maturation since its location at the plasma membrane. Despite the above, the exact role of RECK in this process has not been clarified. This review is focused to summarize the available information on the role of RECK as membrane anchored matrix metalloproteinases and a-disintegrin and metalloproteinases inhibitor, proposing a hypothesis by which RECK play key roles in the physiology and pathophysiology of the angiogenesis processes.


Subject(s)
GPI-Linked Proteins/metabolism , Neovascularization, Pathologic/physiopathology , Neovascularization, Physiologic/physiology , ADAM Proteins/metabolism , Animals , Extracellular Matrix/metabolism , Humans , Matrix Metalloproteinases/metabolism , Mice , Mice, Knockout , Signal Transduction/physiology
9.
Biochem J ; 472(2): 225-37, 2015 Dec 01.
Article in English | MEDLINE | ID: mdl-26417114

ABSTRACT

Understanding how glucose metabolism is finely regulated at molecular and cellular levels in the liver is critical for knowing its relationship to related pathologies, such as diabetes. In order to gain insight into the regulation of glucose metabolism, we studied the liver-expressed isoforms aldolase B and fructose-1,6-bisphosphatase-1 (FBPase-1), key enzymes in gluconeogenesis, analysing their cellular localization in hepatocytes under different metabolic conditions and their protein-protein interaction in vitro and in vivo. We observed that glucose, insulin, glucagon and adrenaline differentially modulate the intracellular distribution of aldolase B and FBPase-1. Interestingly, the in vitro protein-protein interaction analysis between aldolase B and FBPase-1 showed a specific and regulable interaction between them, whereas aldolase A (muscle isozyme) and FBPase-1 showed no interaction. The affinity of the aldolase B and FBPase-1 complex was modulated by intermediate metabolites, but only in the presence of K(+). We observed a decreased association constant in the presence of adenosine monophosphate, fructose-2,6-bisphosphate, fructose-6-phosphate and inhibitory concentrations of fructose-1,6-bisphosphate. Conversely, the association constant of the complex increased in the presence of dihydroxyacetone phosphate (DHAP) and non-inhibitory concentrations of fructose-1,6-bisphosphate. Notably, in vivo FRET studies confirmed the interaction between aldolase B and FBPase-1. Also, the co-expression of aldolase B and FBPase-1 in cultured cells suggested that FBPase-1 guides the cellular localization of aldolase B. Our results provide further evidence that metabolic conditions modulate aldolase B and FBPase-1 activity at the cellular level through the regulation of their interaction, suggesting that their association confers a catalytic advantage for both enzymes.


Subject(s)
Energy Metabolism , Fructose-Bisphosphatase/metabolism , Fructose-Bisphosphate Aldolase/metabolism , Gluconeogenesis , Glycolysis , Hepatocytes/metabolism , Models, Biological , Animals , Cells, Cultured , Fluorescence Resonance Energy Transfer , Fluorescent Antibody Technique , Fructose-Bisphosphatase/chemistry , Fructose-Bisphosphatase/genetics , Fructose-Bisphosphate Aldolase/chemistry , Fructose-Bisphosphate Aldolase/genetics , HeLa Cells , Hepatocytes/cytology , Hepatocytes/enzymology , Humans , Isoenzymes/genetics , Isoenzymes/metabolism , Kinetics , Male , Microscopy, Confocal , Protein Transport , Rats, Wistar , Recombinant Fusion Proteins/metabolism
10.
PLoS One ; 10(8): e0135005, 2015.
Article in English | MEDLINE | ID: mdl-26247610

ABSTRACT

Fibroblasts are critical for wound contraction; a pivotal step in wound healing. They produce and modify the extracellular matrix (ECM) required for the proper tissue remodeling. Reversion-inducing cysteine-rich protein with Kazal motifs (RECK) is a key regulator of ECM homeostasis and turnover. However, its role in wound contraction is presently unknown. Here we describe that Transforming growth factor type ß1 (TGF-ß1), one of the main pro-fibrotic wound-healing promoting factors, decreases RECK expression in fibroblasts through the Smad and JNK dependent pathways. This TGF-ß1 dependent downregulation of RECK occurs with the concomitant increase of ß1-integrin, which is required for fibroblasts adhesion and wound contraction through the activation of focal adhesion kinase (FAK). Loss and gain RECK expression experiments performed in different types of fibroblasts indicate that RECK downregulation mediates TGF-ß1 dependent ß1-integrin expression. Also, reduced levels of RECK potentiate TGF-ß1 effects over fibroblasts FAK-dependent contraction, without affecting its cognate signaling. The above results were confirmed on fibroblasts derived from the Reck+/- mice compared to wild type-derived fibroblasts. We observed that Reck+/- mice heal dermal wounds more efficiently than wild type mice. Our results reveal a critical role for RECK in skin wound contraction as a key mediator in the axis: TGF-ß1-RECK-ß1-integrin.


Subject(s)
GPI-Linked Proteins/genetics , Integrin beta1/metabolism , Transforming Growth Factor beta1/metabolism , Wound Healing/genetics , Wounds, Nonpenetrating/metabolism , Animals , Extracellular Matrix/chemistry , Extracellular Matrix/metabolism , Fibroblasts/metabolism , Fibroblasts/pathology , Focal Adhesion Kinase 1/genetics , Focal Adhesion Kinase 1/metabolism , GPI-Linked Proteins/deficiency , Gene Expression Regulation , Hemizygote , Integrin beta1/genetics , Mice , Mice, Inbred C57BL , Mice, Transgenic , NIH 3T3 Cells , Primary Cell Culture , Signal Transduction , Skin/injuries , Skin/metabolism , Transforming Growth Factor beta1/genetics , Wounds, Nonpenetrating/genetics , Wounds, Nonpenetrating/pathology
11.
Front Cell Neurosci ; 8: 282, 2014.
Article in English | MEDLINE | ID: mdl-25309324

ABSTRACT

Small GTPases participate in a broad range of cellular processes such as proliferation, differentiation, and migration. The exchange of GDP for GTP resulting in the activation of these GTPases is catalyzed by a group of enzymes called guanine nucleotide exchange factors (GEFs), of which two classes: Dbl-related exchange factors and the more recently described dedicator of cytokinesis proteins family exchange factors. Increasingly, deregulation of normal GEF activity or function has been associated with a broad range of disease states, including neurodegeneration and neurodevelopmental disorders. In this review, we examine this evidence with special emphasis on the novel role of Rho guanine nucleotide exchange factor (RGNEF/p190RhoGEF) in the pathogenesis of amyotrophic lateral sclerosis. RGNEF is the first neurodegeneration-linked GEF that regulates not only RhoA GTPase activation but also functions as an RNA binding protein that directly acts with low molecular weight neurofilament mRNA 3' untranslated region to regulate its stability. This dual role for RGNEF, coupled with the increasing understanding of the key role for GEFs in modulating the GTPase function in cell survival suggests a prominent role for GEFs in mediating a critical balance between cytotoxicity and neuroprotection which, when disturbed, contributes to neuronal loss.

12.
Biogerontology ; 15(6): 587-610, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25231915

ABSTRACT

For many years, epidemiological studies have suggested an association between cancer and neurodegenerative disorders-two disease processes that seemingly have little in common. Although these two disease processes share disruptions in a wide range of cellular pathways, including cell survival, cell death and the cell cycle, the end result is very divergent: uncontrolled cell survival and proliferation in cancer and progressive neuronal cell death in neurodegeneration. Despite the clinical data connecting these two disease processes, little is known about the molecular links between them. Among the mechanisms affected in cancer and neurodegenerative diseases, alterations in RNA metabolism are obtaining significant attention given the critical role for RNA transcription, maturation, transport, stability, degradation and translation in normal cellular function. RNA-binding proteins (RBPs) are integral to each stage of RNA metabolism through their participation in the formation of ribonucleoprotein complexes (RNPs). RBPs have a broad range of functions including posttranscriptional regulation of mRNA stability, splicing, editing and translation, mRNA export and localization, mRNA polyadenylation and miRNA biogenesis, ultimately impacting the expression of every single gene in the cell. In this review, we examine the evidence for RBPs as being key a molecular linkages between cancer and neurodegeneration.


Subject(s)
Neoplasms/metabolism , Neurodegenerative Diseases/metabolism , RNA-Binding Proteins/metabolism , Adenosine Deaminase/metabolism , Aged , Aging/genetics , Aging/metabolism , DNA-Binding Proteins/metabolism , ELAV Proteins/metabolism , Fragile X Mental Retardation Protein/metabolism , Guanine Nucleotide Exchange Factors/metabolism , Humans , Neoplasms/genetics , Neurodegenerative Diseases/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Neoplasm/genetics , RNA, Neoplasm/metabolism , RNA-Binding Protein EWS/metabolism , RNA-Binding Protein FUS/metabolism , Ribonuclease, Pancreatic/metabolism , TATA-Binding Protein Associated Factors/metabolism
13.
Int J Mol Sci ; 15(9): 15592-602, 2014 Sep 03.
Article in English | MEDLINE | ID: mdl-25192285

ABSTRACT

MicroRNAs (miRNAs) are small non-coding RNAs that regulate the majority of the transcriptome at a post-transcriptional level. Because of this critical role, it is important to ensure that the assays used to determine their functionality are robust and reproducible. Typically, the reporter gene assay in cell-based systems has been the first-line method to study miRNA functionality. In order to overcome some of the potential errors in interpretation that can be associated with this assay, we have developed a detailed protocol for the luciferase reporter gene assay that has been modified for miRNAs. We demonstrate that normalization against the effect of the miRNA and cellular factors on the luciferase coding sequence is essential to obtain the specific impact of the miRNA on the 3'UTR (untranslated region) target. Our findings suggest that there is a real possibility that the roles for miRNA in transcriptome regulation may be misreported due to inaccurate normalization of experimental data and also that up-regulatory effects of miRNAs are not uncommon in cells. We propose to establish this comprehensive method as standard for miRNA luciferase reporter assays to avoid errors and misinterpretations in the functionality of miRNAs.


Subject(s)
Gene Expression Profiling/methods , Genes, Reporter , Genetic Engineering/methods , Luciferases/metabolism , MicroRNAs/metabolism , 3' Untranslated Regions , Gene Expression Profiling/standards , Genetic Engineering/standards , HEK293 Cells , Humans , Luciferases/genetics , MicroRNAs/genetics , Neurofilament Proteins/genetics , Neurofilament Proteins/metabolism , Reference Standards , Sensitivity and Specificity , Up-Regulation
14.
Article in English | MEDLINE | ID: mdl-24555412

ABSTRACT

Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease caused by the death of motor neurons. While the exact molecular and cellular basis for motor neuron death is not yet fully understood, the current conceptualization is that multiple aberrant biological processes contribute. Among these, one of the most compelling is based on alterations of RNA metabolism. In this review, we examine how the normal process of cellular response to stress leading to RNA stress granule formation might become pathological, resulting in the formation of stable protein aggregates. We discuss the emerging roles of post-translational modifications of RNA binding proteins in the genesis of these aggregates. We also review the contemporary literature regarding the potential role for more widespread alterations in RNA metabolism in ALS, including alterations in miRNA biogenesis, spliceosome integrity and RNA editing. A hypothesis is presented in which aberrant RNA processing, modulated through pathological stress granule formation as a reflection of either mutations within intrinsically disordered or prion-like domains of critical RNA binding proteins, or the post-translational modification of RNA binding proteins, contributes directly to motor neuron death.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Amyotrophic Lateral Sclerosis/metabolism , RNA/metabolism , Humans
15.
Biochim Biophys Acta ; 1840(6): 1798-807, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24444799

ABSTRACT

BACKGROUND: Fructose-1,6-bisphosphatase, a major enzyme of gluconeogenesis, is inhibited by AMP, Fru-2,6-P2 and by high concentrations of its substrate Fru-1,6-P2. The mechanism that produces substrate inhibition continues to be obscure. METHODS: Four types of experiments were used to shed light on this: (1) kinetic measurements over a very wide range of substrate concentrations, subjected to detailed statistical analysis; (2) fluorescence studies of mutants in which phenylalanine residues were replaced by tryptophan; (3) effect of Fru-2,6-P2 and Fru-1,6-P2 on the exchange of subunits between wild-type and Glu-tagged oligomers; and (4) kinetic studies of hybrid forms of the enzyme containing subunits mutated at the active site residue tyrosine-244. RESULTS: The kinetic experiments with the wild-type enzyme indicate that the binding of Fru-1,6-P2 induces the appearance of catalytic sites with lower affinity for substrate and lower catalytic activity. Binding of substrate to the high-affinity sites, but not to the low-affinity sites, enhances the fluorescence emission of the Phe219Trp mutant; the inhibitor, Fru-2,6-P2, competes with the substrate for the high-affinity sites. Binding of substrate to the low-affinity sites acts as a "stapler" that prevents dissociation of the tetramer and hence exchange of subunits, and results in substrate inhibition. CONCLUSIONS: Binding of the first substrate molecule, in one dimer of the enzyme, produces a conformational change at the other dimer, reducing the substrate affinity and catalytic activity of its subunits. GENERAL SIGNIFICANCE: Mimics of the substrate inhibition of fructose-1,6-bisphosphatase may provide a future option for combatting both postprandial and fasting hyperglycemia.


Subject(s)
Biocatalysis , Fructose-Bisphosphatase/chemistry , Kidney/enzymology , Animals , Base Sequence , Binding Sites , Fructose-Bisphosphatase/antagonists & inhibitors , Fructose-Bisphosphatase/metabolism , Fructosediphosphates/chemistry , Molecular Sequence Data , Protein Subunits , Substrate Specificity , Swine
16.
Mol Brain ; 6: 26, 2013 May 24.
Article in English | MEDLINE | ID: mdl-23705811

ABSTRACT

BACKGROUND: Amyotrophic Lateral Sclerosis (ALS) is a progressive, adult onset, fatal neurodegenerative disease of motor neurons. There is emerging evidence that alterations in RNA metabolism may be critical in the pathogenesis of ALS. MicroRNAs (miRNAs) are small non-coding RNAs that are key determinants of mRNA stability. Considering that miRNAs are increasingly being recognized as having a role in a variety of neurodegenerative diseases, we decided to characterize the miRNA expression profile in spinal cord (SC) tissue in sporadic ALS (sALS) and controls. Furthermore, we performed functional analysis to identify a group of dysregulated miRNAs that could be responsible for the selective suppression of low molecular weight neurofilament (NFL) mRNA observed in ALS. RESULTS: Using TaqMan arrays we analyzed 664 miRNAs and found that a large number of miRNAs are differentially expressed in ventral lumbar SC in sALS compared to controls. We observed that the majority of dysregulated miRNAs are down-regulated in sALS SC tissues. Ingenuity Pathway Analysis (IPA) showed that dysregulated miRNAs are linked with nervous system function and cell death. We used two prediction algorithms to develop a panel of miRNAs that have recognition elements within the human NFL mRNA 3'UTR, and then we performed functional analysis for these miRNAs. Our results demonstrate that three miRNAs that are dysregulated in sALS (miR-146a*, miR-524-5p and miR-582-3p) are capable of interacting with NFL mRNA 3'UTR in a manner that is consistent with the suppressed steady state mRNA levels observed in spinal motor neurons in ALS. CONCLUSIONS: The miRNA expression profile is broadly altered in the SC in sALS. Amongst these is a group of dysregulated miRNAs directly regulate the NFL mRNA 3'UTR, suggesting a role in the selective suppression of NFL mRNA in the ALS spinal motor neuron neurofilamentous aggregate formation.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Gene Expression Profiling , MicroRNAs/genetics , Neurofilament Proteins/genetics , 3' Untranslated Regions/genetics , Adult , Aged , Base Sequence , Case-Control Studies , Cell Death/genetics , Demography , Female , Gene Regulatory Networks/genetics , Genes, Reporter/genetics , HEK293 Cells , Humans , Luciferases/metabolism , Male , MicroRNAs/metabolism , Middle Aged , Molecular Sequence Data , Mutation/genetics , Nervous System/pathology , Nervous System/physiopathology , Neurofilament Proteins/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Sequence Alignment , Spinal Cord/metabolism , Spinal Cord/pathology , Up-Regulation/genetics
17.
Article in English | MEDLINE | ID: mdl-23286752

ABSTRACT

Rho guanine nucleotide exchange factor (RGNEF) is a novel NFL mRNA destabilizing factor that forms neuronal cytoplasmic inclusions in spinal motor neurons in both sporadic (SALS) and familial (FALS) ALS patients. Given the observation of genetic mutations in a number of mRNA binding proteins associated with ALS, including TDP-43, FUS/TLS and mtSOD1, we analysed the ARHGEF28 gene (approx. 316 kb) that encodes for RGNEF in FALS cases to determine if mutations were present. We performed genomic sequencing, copy number variation analysis using TaqMan real-time PCR and spinal motor neuron immunohistochemistry using a novel RGNEF antibody. In this limited sample of FALS cases (n=7) we identified a heterozygous mutation that is predicted to generate a premature truncated gene product. We also observed extensive regions of homozygosity in the ARHGEF28 gene in two FALS patients. In conclusion, our findings of genetic alterations in the ARHGEF28 gene in cases of FALS suggest that a more comprehensive genetic analysis would be warranted.


Subject(s)
Amyotrophic Lateral Sclerosis/genetics , Guanine Nucleotide Exchange Factors/genetics , Spinal Cord/metabolism , Aged , Amyotrophic Lateral Sclerosis/metabolism , Case-Control Studies , DNA Copy Number Variations , Female , Frameshift Mutation , Guanine Nucleotide Exchange Factors/metabolism , Homozygote , Humans , Immunohistochemistry , Male , Middle Aged , Real-Time Polymerase Chain Reaction
18.
Neurobiol Aging ; 34(1): 248-62, 2013 Jan.
Article in English | MEDLINE | ID: mdl-22835604

ABSTRACT

Amyotrophic lateral sclerosis (ALS) is an adult-onset progressive disorder of unknown etiology characterized by the selective degeneration of motor neurons. Recent evidence supports the hypothesis that alterations in RNA metabolism in motor neurons can explain the development of protein inclusions, including neurofilamentous aggregates, observed in this pathology. In mice, p190RhoGEF, a guanine nucleotide exchange factor, is involved in neurofilament protein aggregation in an RNA-triggered transgenic model of motor neuron disease. Here, we observed that rho guanine nucleotide exchange factor (RGNEF), the human homologue of p190RhoGEF, binds low molecular weight neurofilament mRNA and affects its stability via 3' untranslated region destabilization. We observed that the overexpression of RGNEF in a stable cell line significantly decreased the level of low molecular weight neurofilament protein. Furthermore, we observed RGNEF cytoplasmic inclusions in ALS spinal motor neurons that colocalized with ubiquitin, p62/sequestosome-1, and TAR (trans-active regulatory) DNA-binding protein 43 (TDP-43). Our results provide further evidence that RNA metabolism pathways are integral to ALS pathology. This is also the first described link between ALS and an RNA binding protein with aggregate formation that is also a central cell signaling pathway molecule.


Subject(s)
Amyotrophic Lateral Sclerosis/pathology , Guanine Nucleotide Exchange Factors/metabolism , Inclusion Bodies/metabolism , Neurofilament Proteins/genetics , RNA, Messenger/metabolism , Adaptor Proteins, Signal Transducing/metabolism , Aged , Aged, 80 and over , Animals , Cell Line, Transformed , DNA-Binding Proteins/metabolism , Female , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Guanine Nucleotide Exchange Factors/genetics , Humans , Immunoprecipitation , Inclusion Bodies/pathology , Male , Mice , Middle Aged , Protein Binding/genetics , RNA Stability/genetics , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Rho Guanine Nucleotide Exchange Factors , Sequestosome-1 Protein , Transfection , Ubiquitin/metabolism
19.
Acta Neuropathol ; 124(5): 733-47, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22941224

ABSTRACT

While the pathogenesis of amyotrophic lateral sclerosis (ALS) remains to be clearly delineated, there is mounting evidence that altered RNA metabolism is a commonality amongst several of the known genetic variants of the disease. In this study, we evaluated the expression of 10 ALS-associated proteins in spinal motor neurons (MNs) in ALS patients with mutations in C9orf72 (C9orf72(GGGGCC)-ALS; n = 5), SOD1 (mtSOD1-ALS; n = 9), FUS/TLS (mtFUS/TLS-ALS; n = 2), or TARDBP (mtTDP-43-ALS; n = 2) and contrasted these to cases of sporadic ALS (sALS; n = 4) and familial ALS without known mutations (fALS; n = 2). We performed colorimetric immunohistochemistry (IHC) using antibodies against TDP-43, FUS/TLS, SOD1, C9orf72, ubiquitin, sequestosome 1 (p62), optineurin, phosphorylated high molecular weight neurofilament, peripherin, and Rho-guanine nucleotide exchange factor (RGNEF). We observed that RGNEF-immunoreactive neuronal cytoplasmic inclusions (NCIs) can co-localize with TDP-43, FUS/TLS and p62 within spinal MNs. We confirmed their capacity to interact by co-immunoprecipitations. We also found that mtSOD1-ALS cases possess a unique IHC signature, including the presence of C9orf72-immunoreactive diffuse NCIs, which allows them to be distinguished from other variants of ALS at the level of light microscopy. These findings support the hypothesis that alterations in RNA metabolism are a core pathogenic pathway in ALS. We also conclude that routine IHC-based analysis of spinal MNs may aid in the identification of families not previously suspected to harbor SOD1 mutations.


Subject(s)
Amyotrophic Lateral Sclerosis/pathology , Motor Neurons/metabolism , RNA-Binding Proteins/metabolism , Spinal Cord/pathology , Adaptor Proteins, Signal Transducing/metabolism , Amyotrophic Lateral Sclerosis/classification , Amyotrophic Lateral Sclerosis/genetics , C9orf72 Protein , Cell Cycle Proteins , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Female , Gene Expression Regulation/genetics , Guanine Nucleotide Exchange Factors/metabolism , Humans , Immunoprecipitation , Intermediate Filament Proteins/metabolism , Male , Membrane Glycoproteins/metabolism , Membrane Transport Proteins , Microscopy, Confocal , Mutation/genetics , Nerve Tissue Proteins/metabolism , Neurofilament Proteins/metabolism , Organic Chemicals , Peripherins , Proteins/genetics , Proteins/metabolism , RNA-Binding Protein FUS/genetics , RNA-Binding Protein FUS/metabolism , Sequestosome-1 Protein , Superoxide Dismutase/genetics , Superoxide Dismutase/metabolism , Superoxide Dismutase-1 , Transcription Factor TFIIIA/metabolism
20.
J Biol Chem ; 284(20): 13551-13561, 2009 May 15.
Article in English | MEDLINE | ID: mdl-19276073

ABSTRACT

Matrix metalloproteinase-2 (MMP-2) is an important extracellular matrix remodeling enzyme, and it has been involved in different fibrotic disorders. The connective tissue growth factor (CTGF/CCN2), which is increased in these pathologies, induces the production of extracellular matrix proteins. To understand the fibrotic process observed in diverse pathologies, we analyzed the fibroblast response to CTGF when MMP-2 activity is inhibited. CTGF increased fibronectin (FN) amount, MMP-2 mRNA expression, and gelatinase activity in 3T3 cells. When MMP-2 activity was inhibited either by the metalloproteinase inhibitor GM-6001 or in MMP-2-deficient fibroblasts, an increase in the basal amount of FN together with a decrease of its levels in response to CTGF was observed. This paradoxical effect could be explained by the fact that the excess of FN could block the access to other ligands, such as CTGF, to integrins. This effect was emulated in fibroblasts by adding exogenous FN or RGDS peptides or using anti-integrin alpha(V) subunit-blocking antibodies. Additionally, in MMP-2-deficient cells CTGF did not induce the formation of stress fibers, focal adhesion sites, and ERK phosphorylation. Anti-integrin alpha(V) subunit-blocking antibodies inhibited ERK phosphorylation in control cells. Finally, in MMP-2-deficient cells, FN mRNA expression was not affected by CTGF, but degradation of (125)I-FN was increased. These results suggest that expression, regulation, and activity of MMP-2 can play an important role in the initial steps of fibrosis and shows that FN levels can regulate the cellular response to CTGF.


Subject(s)
Connective Tissue Growth Factor/pharmacology , Fibroblasts/enzymology , Fibronectins/biosynthesis , Gene Expression Regulation, Enzymologic/drug effects , Matrix Metalloproteinase 2/metabolism , Stress Fibers/metabolism , Animals , Connective Tissue Growth Factor/metabolism , Dipeptides/pharmacology , Extracellular Matrix/genetics , Extracellular Matrix/metabolism , Extracellular Signal-Regulated MAP Kinases/genetics , Extracellular Signal-Regulated MAP Kinases/metabolism , Fibronectins/genetics , Gene Expression Regulation, Enzymologic/physiology , Integrin alphaV/genetics , Integrin alphaV/metabolism , Matrix Metalloproteinase 2/genetics , Matrix Metalloproteinase Inhibitors , Mice , NIH 3T3 Cells , Phosphorylation/drug effects , Phosphorylation/physiology , Protease Inhibitors/pharmacology , RNA, Messenger/biosynthesis , RNA, Messenger/genetics , Stress Fibers/genetics
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