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1.
Proteomics ; 16(14): 2019-27, 2016 07.
Article in English | MEDLINE | ID: mdl-27214824

ABSTRACT

Pharmacologic blockade of the myostatin (Mstn)/activin receptor pathway is being pursued as a potential therapy for several muscle wasting disorders. The functional benefits of blocking this pathway are under investigation, in particular given the findings that greater muscle hypertrophy results from Mstn deficiency arising from genetic ablation compared to post-developmental Mstn blockade. Using high-resolution MS coupled with SILAC mouse technology, we quantitated the relative proteomic changes in gastrocnemius muscle from Mstn knockout (Mstn(-/-) ) and mice treated for 2-weeks with REGN1033, an anti-Mstn antibody. Relative to wild-type animals, Mstn(-/-) mice had a two-fold greater muscle mass and a >1.5-fold change in expression of 12.0% of 1137 quantified muscle proteins. In contrast, mice treated with REGN1033 had minimal changes in muscle proteome (0.7% of 1510 proteins >1.5-fold change, similar to biological difference 0.5% of 1310) even though the treatment induced significant 20% muscle mass increase. Functional annotation of the altered proteins in Mstn(-/-) mice corroborates the mutiple physiological changes including slow-to-fast fiber type switch. Thus, the proteome-wide protein expression differs between Mstn(-/-) mice and mice subjected to specific Mstn blockade post-developmentally, providing molecular-level insights to inform mechanistic hypotheses to explain the observed functional differences.


Subject(s)
Hypertrophy/genetics , Muscle, Skeletal/metabolism , Muscular Diseases/genetics , Myostatin/genetics , Proteome/genetics , Animals , Antibodies, Monoclonal/pharmacology , Disease Models, Animal , Female , Gene Expression Profiling , Gene Expression Regulation , Gene Ontology , Humans , Hypertrophy/metabolism , Hypertrophy/pathology , Isotope Labeling , Male , Mice , Mice, Knockout , Molecular Sequence Annotation , Muscle Fibers, Fast-Twitch/drug effects , Muscle Fibers, Fast-Twitch/metabolism , Muscle Fibers, Fast-Twitch/pathology , Muscle Fibers, Slow-Twitch/drug effects , Muscle Fibers, Slow-Twitch/metabolism , Muscle Fibers, Slow-Twitch/pathology , Muscle, Skeletal/drug effects , Muscle, Skeletal/pathology , Muscular Diseases/metabolism , Muscular Diseases/pathology , Myostatin/antagonists & inhibitors , Myostatin/deficiency , Organ Size , Proteome/metabolism
2.
Cancer Res ; 76(8): 2327-39, 2016 04 15.
Article in English | MEDLINE | ID: mdl-26921327

ABSTRACT

Anti-VEGF therapies benefit several cancer types, but drug resistance that limits therapeutic response can emerge. We generated cell lines from anti-VEGF-resistant tumor xenografts to investigate the mechanisms by which resistance develops. Of all tumor cells tested, only A431 (A431-V) epidermoid carcinoma cells developed partial resistance to the VEGF inhibitor aflibercept. Compared with the parental tumors, A431-V tumors secreted greater amounts of IL6 and exhibited higher levels of phospho-STAT3. Notably, combined blockade of IL6 receptor (IL6R) and VEGF resulted in enhanced activity against A431-V tumors. Similarly, inhibition of IL6R enhanced the antitumor effects of aflibercept in DU145 prostate tumor cells that displays high endogenous IL6R activity. In addition, post hoc stratification of data obtained from a clinical trial investigating aflibercept efficacy in ovarian cancer showed poorer survival in patients with high levels of circulating IL6. These results suggest that the activation of the IL6/STAT3 pathway in tumor cells may provide a survival advantage during anti-VEGF treatment, suggesting its utility as a source of response biomarkers and as a therapeutic target to heighten efficacious results. Cancer Res; 76(8); 2327-39. ©2016 AACR.


Subject(s)
Interleukin-6/metabolism , STAT3 Transcription Factor/metabolism , Signal Transduction , Vascular Endothelial Growth Factor A/antagonists & inhibitors , Animals , Cell Line, Tumor , Drug Resistance, Neoplasm , Heterografts , Humans , Interleukin-6/antagonists & inhibitors , Mice , Receptors, Vascular Endothelial Growth Factor , Recombinant Fusion Proteins/pharmacology
3.
PLoS One ; 9(2): e86453, 2014.
Article in English | MEDLINE | ID: mdl-24498275

ABSTRACT

Recombinant adeno-associated vectors (rAAV) are commonly purified by either chromatography or equilibrium CsCl gradient. Nevertheless, even after purification various cellular proteins often associate with rAAV vector capsids. Such co-purifying cellular proteins may raise concern about safety of gene therapy. Here we report identification and characterization of the co-purifying cellular protein in the vector preparations by using a combination of two proteomics approaches, GeLC-MS (gel electrophoresis liquid chromatography-mass spectrometry) and 2DE (two-dimensional gel electrophoresis). Most prominent bands revealed by Coomassie Blue staining were mostly similar to the AAV capsid proteins. Posttranslational modifications of capsid proteins were detected by the proteomics analysis. A total of 13 cellular proteins were identified in the rAAV vectors purified by two rounds of cesium chloride gradient centrifugation, including 9 by the GeLC-MS analysis and 4 by the 2DE analysis. Selected cellular proteins were verified by western blot. Furthermore, the cellular proteins could be consistently found associated with different AAV serotypes and carrying different transgenes. Yet, the proteins were not integral components of the viral capsis since a stringent washing procedure by column purification could remove them. These co-purified proteins in AAV vector preparations may have a role in various stages of the AAV life cycle.


Subject(s)
Capsid Proteins/analysis , Dependovirus/metabolism , Proteome/analysis , Proteomics/methods , Blotting, Western , Capsid Proteins/isolation & purification , Chromatography, Liquid , Dependovirus/genetics , Electrophoresis, Gel, Two-Dimensional , Genetic Therapy/methods , Genetic Therapy/standards , Genetic Vectors/genetics , Humans , Mass Spectrometry , Proteome/isolation & purification , Reproducibility of Results , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
4.
Obesity (Silver Spring) ; 19(7): 1366-73, 2011 Jul.
Article in English | MEDLINE | ID: mdl-21475143

ABSTRACT

Endoplasmic reticulum (ER) stress has recently been implicated as a cause for obesity-related insulin resistance; however, what causes ER stress in obesity has remained uncertain. Here, we have tested the hypothesis that macronutrients can cause acute (ER) stress in rat liver. Examined were the effects of intravenously infused glucose and/or lipids on proximal ER stress sensor activation (PERK, eIF2-α, ATF4, Xbox protein 1 (XBP1s)), unfolded protein response (UPR) proteins (GRP78, calnexin, calreticulin, protein disulphide isomerase (PDI), stress kinases (JNK, p38 MAPK) and insulin signaling (insulin/receptor substrate (IRS) 1/2 associated phosphoinositol-3-kinase (PI3K)) in rat liver. Glucose and/or lipid infusions, ranging from 23.8 to 69.5 kJ/4 h (equivalent to between ~17% and ~50% of normal daily energy intake), activated the proximal ER stress sensor PERK and ATF6 increased the protein abundance of calnexin, calreticulin and PDI and increased two GRP78 isoforms. Glucose and glucose plus lipid infusions induced comparable degrees of ER stress, but only infusions containing lipid activated stress kinases (JNK and p38 MAPK) and inhibited insulin signaling (PI3K). In summary, physiologic amounts of both glucose and lipids acutely increased ER stress in livers 12-h fasted rats and dependent on the presence of fat, caused insulin resistance. We conclude that this type of acute ER stress is likely to occur during normal daily nutrient intake.


Subject(s)
Endoplasmic Reticulum/metabolism , Fat Emulsions, Intravenous/administration & dosage , Glucose/administration & dosage , Liver/metabolism , Phospholipids/administration & dosage , Soybean Oil/administration & dosage , Stress, Physiological , Activating Transcription Factor 6/metabolism , Animals , Emulsions/administration & dosage , Emulsions/adverse effects , Endoplasmic Reticulum Chaperone BiP , Fat Emulsions, Intravenous/adverse effects , Glucose/adverse effects , Heat-Shock Proteins/chemistry , Heat-Shock Proteins/metabolism , Infusions, Intravenous , Insulin/administration & dosage , Insulin/blood , Insulin/metabolism , Insulin Resistance , Kinetics , MAP Kinase Signaling System , Male , Phosphatidylinositol 3-Kinase/metabolism , Phosphoinositide-3 Kinase Inhibitors , Phospholipids/adverse effects , Rats , Rats, Sprague-Dawley , Soybean Oil/adverse effects , Unfolded Protein Response , eIF-2 Kinase/metabolism
5.
Genes Cancer ; 2(10): 985-92, 2011 Oct.
Article in English | MEDLINE | ID: mdl-22701764

ABSTRACT

Cardiac toxicity is a major limitation in the use of doxorubicin (and related anthracyclins). ON 1910.Na (Estybon, Rogersitib, or 1910), a substituted benzyl styryl sulfone, is equally active as doxorubicin against MCF-7 human mammary carcinoma xenografted into nude mice. 1910 augments the antitumor activity of doxorubicin when given simultaneously. Furthermore, when given in combination, 1910 protects against cardiac weight loss and against morphological damage to cardiac tissues. Doxorubicin induces inactivation of glucose response protein 78 (GRP78), a principal chaperone that serves as the master regulator of the unfolded protein response (UPR). Inactivated GRP78 leads to an increase in misfolded proteins, endoplasmic reticulum (ER) stress, activation of UPR sensors, and increased CHOP expression. 1910 prevents the inactivation of GRP78 by doxorubicin, and the combination, while more active against the tumor, protects against cardiac weight loss.

6.
J Proteome Res ; 9(11): 6025-6032, 2010 Nov 05.
Article in English | MEDLINE | ID: mdl-20883044

ABSTRACT

Embryos produced by somatic cell nuclear transfer (SCNT) display low term developmental potential. This is associated with deficiencies in spindle composition prior to activation and at early mitotic divisions, including failure to assemble certain proteins on the spindle. The protein-deficient spindles are accompanied by chromosome congression defects prior to activation and during the first mitotic divisions of the embryo. The molecular basis for these deficiencies and how they might be avoided are unknown. Proteomic analyses of spindles isolated from normal metaphase II (MII) stage oocytes and SCNT constructs, along with a systematic immunofluorescent survey of known spindle-associated proteins were undertaken. This was the first proteomics study of mammalian oocyte spindles. The study revealed four proteins as being deficient in spindles of SCNT embryos in addition to those previously identified; these were clathrin heavy chain (CLTC), aurora B kinase, dynactin 4, and casein kinase 1 alpha. Due to substantial reduction in CLTC abundance after spindle removal, we undertook functional studies to explore the importance of CLTC in oocyte spindle function and in chromosome congression defects of cloned embryos. Using siRNA knockdown, we demonstrated an essential role for CLTC in chromosome congression during oocyte maturation. We also demonstrated rescue of chromosome congression defects in SCNT embryos at the first mitosis using CLTC mRNA injection. These studies are the first to employ proteomics analyses coupled to functional interventions to rescue a specific molecular defect in cloned embryos.


Subject(s)
Chromosome Segregation/drug effects , Cloning, Organism , Oocytes/ultrastructure , Proteomics/methods , Spindle Apparatus/chemistry , Animals , Aurora Kinase B , Aurora Kinases , Casein Kinase I/deficiency , Chromosome Segregation/genetics , Clathrin Heavy Chains/analysis , Clathrin Heavy Chains/drug effects , Dynactin Complex , Embryo, Mammalian , Mice , Mice, Inbred Strains , Microtubule-Associated Proteins/deficiency , Oocytes/chemistry , Protein Serine-Threonine Kinases/deficiency , Proteins/analysis , RNA, Messenger/administration & dosage , RNA, Messenger/therapeutic use
7.
Proteomics ; 10(11): 2165-74, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20340163

ABSTRACT

To better understand lung oxidant stress responses, we examined A549 lung cells exposed to H(2)O(2) using "stable isotope labeling by amino acids." We identified 466 cytosolic and 387 nuclear proteins; H(2)O(2) exposure produced >or=twofold differences in 31, all were downregulations. None were previously reported as oxidant stress response proteins, although they share common functions. One of the responders, treacle, was linked to p53, an important oxidative stress response. The Treacher Collins-Franceschetti syndrome can result from treacle mutation and insufficiency was suggested to cause increased p53 leading to the syndrome. However, results here indicate p53 and treacle responses to H(2)O(2) are independent: treacle remains suppressed after p53 recovery; the threshold for treacle reduction is well above that for p53 induction; and treacle suppression by short interfering RNA does not modify the p53 response. Evidence of treacle antioxidant activity include reduction being driven by proteasome degradation independently of mRNA, typical for oxidant-absorbing proteins, and increased sensitivity to H(2)O(2) consequent to short interfering RNA suppression. Data here show a link between oxidative stress and treacle reduction, demonstrate that treacle does not control p53, provide evidence of a treacle oxidant defense role, support the hypothesis that oxidant stress plays a role in the Treacher Collins-Franceschetti syndrome, and raise the possibility that treacle plays an anti-oxidant role in lungs.


Subject(s)
Alveolar Epithelial Cells/drug effects , Alveolar Epithelial Cells/metabolism , Oxidative Stress/drug effects , Proteome/analysis , Blotting, Western , Cell Line , Electrophoresis, Polyacrylamide Gel , Humans , Hydrogen Peroxide/pharmacology , Isotope Labeling , Mass Spectrometry , Oxidative Stress/physiology , Polymerase Chain Reaction
8.
Proteomics ; 9(3): 636-47, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19137545

ABSTRACT

The liver plays a major role in the early hypometabolic and later hypermetabolic phases after severe burn injury. Proteomic analysis was used to identify altered proteins in liver during these two phases. Sprague-Dawley rats were subjected to a full-thickness dorsal burn injury covering 40% of the total body surface area. Controls consisted of sham-treated animals. Liver tissues were collected on postburn days 1 and 7. The proteomic data show greater production of positive acute phase proteins on day 1 than on day 7. Many antioxidant enzymes were coordinately downregulated on day 1, including the potent biliverdin reductase. These antioxidants were restored and in some cases upregulated on day 7. This opposite trend in the change of antioxidant proteins corroborated our finding of more pronounced oxidative stress on day 1 than on day 7 as measured via protein carbonyl content. The changes of metabolic enzymes on days 1 and 7 were consistent with hypo- and hyper-metabolic states, respectively. Furthermore, a previously unreported decrease in ornithine aminotransferase on day 7 may be a key contributor to the observed increased urinary urea excretion during the hypermetabolic phase. Overall, the many differences in protein expression observed on postburn days 1 and 7 reflect the dissimilar hepatic metabolic patterns during the acute and flow phases following burn injury.


Subject(s)
Burns/physiopathology , Liver/metabolism , Animals , Blotting, Western , Disease Models, Animal , Electrophoresis, Gel, Two-Dimensional , Male , Mass Spectrometry , Random Allocation , Rats , Rats, Sprague-Dawley , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
9.
J Proteome Res ; 7(11): 4955-61, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18817430

ABSTRACT

Oxidative injury is believed to play an important role in the pathogenesis of lung diseases such as emphysema and lung cancer. We examined the effects of a classic reactive oxygen species, H 2O 2, on the hydrogen peroxide response proteins (HPRP) in human pneumocytes using comparative two-dimensional gel electrophoresis (2DE) and peptide mass fingerprinting. Four HPRP-associated proteins (DJ-1, peroxiredoxins [Prxs] I and IV and glyceraldehyde-3-phosphate dehydrogenase [GAPDH]) were changed upon exposure to H 2O 2 (1 mM for 24 h). H 2O 2 exposure increased the acid (oxidized) form and decreased the basic (reduced) form of DJ-1 (pI 5.8 and 6.2, respectively), Prx I and IV and GAPDH. Mechanistic studies on DJ-1 indicated that the slow recovery of the reduced form was blocked by cyclohexamide, suggesting that the recovery was due to new protein synthesis. Total DJ-1 expression was decreased by increasing concentrations of H 2O 2. In contrast, a more complex mix of oxidants in the form of cigarette smoke extract (CSE) dose-dependently increased DJ-1 expression and produced a novel DJ-1 isoform (p I 5.6). Moreover, DJ-1 expression was higher in the lungs of chronic cigarette smokers compared with nonsmokers, a result which resembled the effects of CSE in cultured cells. These data indicate that in human pneumocytes, DJ-1 functions as an antioxidant but that no enzymatic system converts the oxidized to the reduced form. Up-regulation of DJ-1 by cigarette smoke may be a compensatory mechanism that protects the lung from oxidative stress-related injury.


Subject(s)
Gene Expression Regulation , Intracellular Signaling Peptides and Proteins/metabolism , Oncogene Proteins/metabolism , Oxidative Stress/physiology , Proteome/analysis , Pulmonary Alveoli/metabolism , Cell Line , Dose-Response Relationship, Drug , Humans , Hydrogen Peroxide/metabolism , Hydrogen Peroxide/pharmacology , Intracellular Signaling Peptides and Proteins/genetics , Oncogene Proteins/genetics , Oxidants/metabolism , Oxidants/pharmacology , Oxidative Stress/drug effects , Protein Deglycase DJ-1 , Proteomics/methods , Pulmonary Alveoli/cytology
10.
Diabetes ; 57(9): 2438-44, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18567819

ABSTRACT

OBJECTIVE: To examine fat biopsy samples from lean insulin-sensitive and obese insulin-resistant nondiabetic individuals for evidence of endoplasmic reticulum (ER) stress. RESEARCH DESIGN AND METHODS: Subcutaneous fat biopsies were obtained from the upper thighs of six lean and six obese nondiabetic subjects. Fat homogenates were used for proteomic (two-dimensional gel and MALDI-TOF/TOF), Western blot, and RT-PCR analysis. RESULTS: Proteomic analysis revealed 19 differentially upregulated proteins in fat of obese subjects. Three of these proteins were the ER stress-related unfolded protein response (UPR) proteins calreticulin, protein disulfide-isomerase A3, and glutathione-S-transferase P. Western blotting revealed upregulation of several other UPR stress-related proteins, including calnexin, a membrane-bound chaperone, and phospho c-jun NH(2)-terminal kinase (JNK)-1, a downstream effector protein of ER stress. RT-PCR analysis revealed upregulation of the spliced form of X-box binding protein-1s, a potent transcription factor and part of the proximal ER stress sensor inositol-requiring enzyme-1 pathway. CONCLUSIONS: These findings represent the first demonstration of UPR activation in subcutaneous adipose tissue of obese human subjects. As JNK can inhibit insulin action and activate proinflammatory pathways, ER stress activation of JNK may be a link between obesity, insulin resistance, and inflammation.


Subject(s)
Endoplasmic Reticulum/metabolism , Insulin Resistance/physiology , Obesity/physiopathology , Oxidative Stress/physiology , Proteomics , Subcutaneous Fat/physiology , Adult , Biopsy , Body Weight , Electrophoresis, Gel, Two-Dimensional , Female , Gene Expression Profiling , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Humans , Male , Middle Aged , Obesity/pathology , Polysaccharides, Bacterial , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Subcutaneous Fat/cytology
11.
Am J Respir Cell Mol Biol ; 38(5): 541-50, 2008 May.
Article in English | MEDLINE | ID: mdl-18079489

ABSTRACT

Cigarette smoking, which exposes the lung to high concentrations of reactive oxidant species (ROS) is the major risk factor for chronic obstructive pulmonary disease (COPD). Recent studies indicate that ROS interfere with protein folding in the endoplasmic reticulum and elicit a compensatory response termed the "unfolded protein response" (UPR). The importance of the UPR lies in its ability to alter expression of a variety of genes involved in antioxidant defense, inflammation, energy metabolism, protein synthesis, apoptosis, and cell cycle regulation. The present study used comparative proteomic technology to test the hypothesis that chronic cigarette smoking induces a UPR in the human lung. Studies were performed on lung tissue samples obtained from three groups of human subjects: nonsmokers, chronic cigarette smokers, and ex-smokers. Proteomes of lung samples from chronic cigarette smokers demonstrated 26 differentially expressed proteins (20 were up-regulated, 5 were down-regulated, and 1 was detected only in the smoking group) compared with nonsmokers. Several UPR proteins were up-regulated in smokers compared with nonsmokers and ex-smokers, including the chaperones, glucose-regulated protein 78 (GRP78) and calreticulin; a foldase, protein disulfide isomerase (PDI); and enzymes involved in antioxidant defense. In cultured human airway epithelial cells, GRP78 and the UPR-regulated basic leucine zipper, transcription factors, ATF4 and Nrf2, which enhance expression of important anti-oxidant genes, increased rapidly (< 24 h) with cigarette smoke extract. These data indicate that cigarette smoke induces a UPR response in the human lung that is rapid in onset, concentration dependent, and at least partially reversible with smoking cessation. We speculate that activation of a UPR by cigarette smoke may protect the lung from oxidant injury and the development of COPD.


Subject(s)
Lung/chemistry , Nicotiana/metabolism , Protein Folding , Proteome/chemistry , Proteomics , Pulmonary Disease, Chronic Obstructive/etiology , Pulmonary Disease, Chronic Obstructive/prevention & control , Smoke , Aged , Animals , Cell Line , Endoplasmic Reticulum Chaperone BiP , Female , Gene Expression Regulation/drug effects , Humans , Lung/metabolism , Lung/pathology , Male , Middle Aged , Oxidants/adverse effects , Proteome/drug effects , Proteome/metabolism , Pulmonary Disease, Chronic Obstructive/genetics , Reactive Nitrogen Species/adverse effects , Reactive Nitrogen Species/metabolism , Reactive Oxygen Species/adverse effects , Reactive Oxygen Species/metabolism , Smoke/adverse effects , Nicotiana/adverse effects
12.
J Leukoc Biol ; 83(2): 305-13, 2008 Feb.
Article in English | MEDLINE | ID: mdl-18024716

ABSTRACT

Burn injury results in immunosuppression; previous work implicated a combination of altered T lymphocyte subpopulations and the elaboration of macrophage-derived mediators. However, the conclusions were based on T cell stimulations in the setting of high-dose polyclonal mitogenic stimuli and a single kinetic time-point. In this study, splenocytes from burned animals were used to examine lymphocyte responses over a multi-day time course following saturating and subsaturating anti-CD3, as well as mixed lymphocyte response (MLR) stimulation. Burn injury resulted in suppressed splenocyte-proliferative responses to high-dose anti-CD3 (2 microg/ml) at all culture time-points (Days 2-5); this inhibition was eliminated by removing macrophages from the splenocyte cultures, by blocking NO production, or by using splenocytes from burned animals congenitally deficient in IFN-gamma (IFN-gamma(-/-)). The results are consistent with immunosuppression attributable to burn-induced IFN-gamma production, which in turn, drives macrophage NO synthesis (NOS). In MLR cultures, lymphocyte proliferation and IFN-gamma production were depressed at later time-points (Days 3-5). APC from burned animals showed no defects as MLR stimulators; T cells from burned animals showed defective, proliferative responses, regardless of the stimulator population. Removing macrophages, adding a NOS inhibitor, or using IFN-gamma(-/-) splenocytes did not restore the MLR response of burned splenocytes. T cells from burned IFN-gamma(-/-) animals also showed depressed proliferation with subsaturating levels of anti-CD3 (0.1 microg/ml); anti-CD-28 augmented the proliferative response. We conclude that burn-induced immunosuppression to authentic antigenic stimulation is related at least in part to defective CD3 signaling pathways and not simply to increased IFN-gamma or NO production.


Subject(s)
Burns/immunology , CD3 Complex/immunology , Immune Tolerance , Interferon-gamma/physiology , Nitric Oxide/physiology , T-Lymphocyte Subsets/immunology , Animals , Antibodies, Monoclonal/immunology , Antigen Presentation , Burns/physiopathology , Interferon-gamma/deficiency , Lymphocyte Culture Test, Mixed , Macrophages/physiology , Male , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Mice, Knockout , Spleen/immunology , Spleen/pathology
13.
Biochem J ; 397(1): 149-58, 2006 Jul 01.
Article in English | MEDLINE | ID: mdl-16483253

ABSTRACT

mRNA profiling has been extensively used to study muscle wasting. mRNA level changes may not reflect that of proteins, especially in catabolic muscle where there is decreased synthesis and increased degradation. As sepsis is often associated with burn injury, and burn superimposed by sepsis has been shown to result in significant loss of lean tissues, we characterized changes in the skeletal-muscle proteome of rats subjected to a cutaneous burn covering 20% of the total body surface area, followed 2 days later by sepsis induced by CLP (caecal ligation and puncture). EDL (extensor digitorum longus) muscles were dissected from Burn-CLP animals (n=4) and controls (sham-burned and sham-CLP-treated, n=4). Burn-CLP injury resulted in a rapid loss of EDL weight, increased ubiquitin-conjugated proteins and increased protein carbonyl groups. EDL protein profiles were obtained by two-dimensional gel electrophoresis using two immobilized pH gradient strips with overlapping pH range covering a pH 3-8 range. Seventeen spots were significantly altered in the Burn-CLP compared with the control group, representing 15 different proteins identified by peptide mass fingerprinting. The identities of three proteins including transferrin were further confirmed by liquid chromatography-tandem MS. The significant changes in transferrin and HSP27 (heat-shock protein 27) were verified by Western-blot analysis. HSP60, HSP27 and HSPbeta6 were down-regulated, along with HSP70, as detected by Western blotting. Six metabolic enzymes related to energy production were also down-regulated. A simultaneous decrease in chaperone proteins and metabolic enzymes could decrease protein synthesis. Furthermore, decreased HSPs could increase oxidative damage, thus accelerating protein degradation. Using cultured C2C12 myotubes, we showed that H2O2-induced protein degradation in vitro could be partially attenuated by prior heat-shock treatment, consistent with a protective role of HSP70 and/or other HSPs against proteolysis.


Subject(s)
Burns/complications , Muscle, Skeletal/metabolism , Muscular Atrophy/metabolism , Protein Biosynthesis , Sepsis/metabolism , Animals , Antioxidants , Cells, Cultured , Down-Regulation , HSP70 Heat-Shock Proteins/biosynthesis , Hydrogen Peroxide , Male , Molecular Chaperones/metabolism , Muscle Fibers, Skeletal , Muscle, Skeletal/pathology , Oxidative Stress , Proteomics , Rats , Rats, Sprague-Dawley
14.
Proteomics ; 5(15): 3991-4000, 2005 Oct.
Article in English | MEDLINE | ID: mdl-16130172

ABSTRACT

Immunodepletion of albumin to improve the 2-D gel resolution of human plasma proteins has recently been described. With the importance of mouse models in many studies in which serum or plasma is often analyzed, we have adopted this approach to immunoprecipitate mouse albumin and evaluated its effectiveness for 2-D separation of mouse plasma proteins. Purified polyclonal antibodies against mouse albumin were effective depleting intact albumin as well as its numerous fragments from mouse plasma samples. Removal of albumin resulted in better resolution of mouse plasma proteins. Three proteins, alpha2-macroglobulin, coagulation factor XII, and hemopexin, that were previously either undetectable or poorly resolved, were identified from albumin-depleted 2-D gels by peptide mass fingerprinting. Albumin depletion also led to partial loss of several other proteins such as clusterin and gelsolin. This loss can be attributed to the interaction with albumin itself because the specificity of the antibody was demonstrated by Western blot. When applying this method to the 2-D separation of plasma from inflamed mouse induced by cutaneous burn injury with superimposed Pseudomonas aeruginosa infection, the upregulation of inter alpha-trypsin inhibitor heavy chain 4 (ITIH4) and hemopexin was unambiguously detected along with other mouse acute-phase proteins (APP), including haptoglobin and serum amyloid A. Based on the significant increase of ITIH4, we propose that this protein is a new member of mouse APP that are upregulated during the inflammatory response.


Subject(s)
Blood Proteins/isolation & purification , Acute-Phase Proteins/isolation & purification , Animals , Blotting, Western , Burns/blood , Burns/complications , Calcium-Binding Proteins/metabolism , Disease Models, Animal , Electrophoresis, Gel, Two-Dimensional , Glycoproteins/metabolism , Hemopexin/isolation & purification , Hemopexin/metabolism , Humans , Immunoprecipitation , Infections/blood , Infections/complications , Male , Mice , Mice, Inbred Strains , Proteinase Inhibitory Proteins, Secretory , Serum Albumin , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
15.
Biotechnol Bioeng ; 91(4): 502-15, 2005 Aug 20.
Article in English | MEDLINE | ID: mdl-15918168

ABSTRACT

The liver is the major source of proteins used throughout the body for various functions. Upon injury or infection, an acute phase response (APR) is initiated in the liver that is primarily mediated by inflammatory cytokines such as interleukin-1beta (IL-1beta) and interleukin-6. Among others, the APR is characterized by an altered protein synthetic profile. We used two-dimensional gel electrophoresis to study the dynamics of changes in protein synthesis in hepatocytes exposed to these inflammatory cytokines. Protein profiles were quantified using image analysis and further analyzed using multivariate statistical methods. Our results indicate that IL-1beta and IL-6 each induces secreted protein responses with distinct dynamics and dose-dependence. Parallel stimulation by IL-1beta and IL-6 results in a protein pattern indistinguishable from the IL-1beta pattern, indicating a dominant effect of IL-1beta over IL-6 at the doses tested. Multidimensional scaling (MDS) of correlation distances between protein secretion levels revealed two protein pairs that are robustly co-secreted across the various cytokine stimulation conditions, suggesting shared regulatory pathways. Finally, we also used multivariate alternating conditional expectation (MACE) to identify transformation functions that discriminated the cytokine-stimulated and untreated hepatocyte-secreted protein profiles. Our analysis indicates that the expression of neutrophil gelatinase-associated lipocalin (NGAL) was sufficient to discriminate between IL-1beta and IL-6 stimulation. The combination of proteomics and multivariate analysis is expected to provide new information on the cellular regulatory networks involved in generating specific cellular responses.


Subject(s)
Acute-Phase Proteins/analysis , Acute-Phase Proteins/isolation & purification , Hepatocytes/metabolism , Interleukin-1/physiology , Proto-Oncogene Proteins/analysis , Proto-Oncogene Proteins/isolation & purification , Amino Acid Sequence , Animals , Biomarkers/analysis , Blood Proteins/analysis , Blotting, Western , Dose-Response Relationship, Immunologic , Hepatocytes/immunology , Humans , Interleukin-6/physiology , Lipocalin-2 , Lipocalins , Male , Molecular Sequence Data , Multivariate Analysis , Proteomics , Rats , Rats, Sprague-Dawley , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
16.
Electrophoresis ; 25(17): 3055-65, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15349948

ABSTRACT

With the importance of mouse as a model to study human diseases and the human and rat plasma/serum two-dimensional (2-D) maps being extensively annotated, this study was aimed at constructing a detailed mouse serum 2-D map. Serum proteins from two different inbred strains of mice (BALB/cJ and C57BL/6J) and mice subjected to two different inflammatory stimuli (20% burn injury and lipopolysaccharide (LPS) injection) were separated on overlapping gels covering pH 3-8 and stained with SYPRO Ruby dye. The tryptic peptides from the resolved spots were analyzed by mass spectrometry, leading to the identification of 38 different gene products. With the exception of major urinary proteins found in abundance in male C57BL/6J mice, little strain difference of the mouse serum 2-D was observed. Many proteins detected in the mouse serum 2-D map were not reported in human or rat serum 2-D maps including epidermal growth factor receptor. Three major murine acute-phase proteins (APPs), haptoglobin, serum amyloid A, and serum amyloid P, were highly induced by both inflammatory stimuli. Image analysis shows that the variations of APPs between these two inflammatory models were not uniform although LPS (100 microg/animal) in general was more effective than 20% burn injury in inducing APPs. Serum amyloid A, much more sensitive to endotoxin than burn injury, may represent a sensitive marker to differentiate these two different inflammatory states.


Subject(s)
Blood Chemical Analysis/methods , Blood Proteins/isolation & purification , Burns/blood , Infections/blood , Wounds and Injuries/blood , Animals , Blood Proteins/chemistry , Electrophoresis, Gel, Two-Dimensional/methods , Mass Spectrometry , Mice , Reference Values , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods
17.
Proteomics ; 4(6): 1830-9, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15174149

ABSTRACT

We examined the role of the pleiotropic cytokine interferon-gamma (IFN-gamma) in initiating the burn injury-induced acute phase response (APR). Two-dimensional (2-D) electrophoresis was used to obtain serum protein profiles from wild-type (WT) and IFN-gamma knockout mice following sham-burn or 20% burn injury. Serum 2-D images from both groups of burn-injured mice were characterized by the upregulation of a similar panel of protein spots. These included the three major murine acute phase proteins haptoglobin, serum amyloid A, and serum amyloid P, that were identified by matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF)-mass spectrometry. Furthermore, the changes in the levels of these protein spots were very similar between these two groups of mice, as determined by image analysis. Other features of burn-induced APR such as a decrease in total serum protein concentration, an elevated circulation level of the cytokine interleukin-6 (IL-6), and activation of the IL-6 signal transduction protein STAT3 were also evaluated and found to be similar between wild-type and IFN-gamma knockout mice. These results suggest a dispensable role of IFN-gamma in the induction of the hepatic APR in mice following burn injury.


Subject(s)
Acute-Phase Reaction/pathology , Burns/metabolism , Interferon-gamma/physiology , Proteome/analysis , Acute-Phase Reaction/etiology , Animals , Blotting, Western , Burns/pathology , Electrophoresis, Gel, Two-Dimensional , Interferon-gamma/analysis , Interferon-gamma/genetics , Mass Spectrometry , Mice , Mice, Knockout , Models, Biological , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Up-Regulation
18.
Biomaterials ; 23(4): 1197-203, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11791923

ABSTRACT

A novel method for improving the haemocompatibility of biomedical materials through endogenous nitric oxide (NO) is presented. L-cysteine was covalently immobilized onto two biomedical polymers: polyurethane (PU) and polyethylene terephthalate (PET). The L-cysteine content on the polymers was approximately 5-8 nmol/cm2 as quantified via a chemiluminescence-based assay. The haemocompatibility of the modified polymers was evaluated in terms of the number of adhered platelets when exposed to a platelet suspension labeled with Cr51. Platelet adherence on the L-cysteine-modified polymers was reduced more than 50% as compared to the control (glycine-modified polymers) when the platelet suspension contained plasma constituents. No difference in platelet adhesion was observed in the absence of plasma constituents. Further experiments demonstrated that NO was easily transferred to the L-cysteine-modified polymers from S-nitroso-albumin in PBS buffer. The NO was then released from the polymer. NO transfer or release was not observed for the control. The results suggest that L-cysteine-modified polymers are effective in reducing platelet adhesion via the transfer of NO from endogenous S-nitrosoproteins in plasma to the polymer followed by the subsequent release of NO. Thus, exploiting endogenous NO is a viable option for improving the haemocompatibility of biomaterials.


Subject(s)
Biocompatible Materials , Blood , Nitric Oxide , Polymers , Animals , Biocompatible Materials/chemistry , Cattle , Cysteine/chemistry , Humans , In Vitro Techniques , Materials Testing , Nitric Oxide/blood , Platelet Adhesiveness , Polyethylene Terephthalates/chemistry , Polymers/chemistry , Polyurethanes/chemistry , Serum Albumin, Bovine/chemistry
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