Automatic Determination of the Non-Covalent Stable Conformations of the NO2-Pyrene Cluster in Full Dimensionality (81D) Using the vdW-TSSCDS Approach.

We present the detailed topographical characterisation (stationary points and minimum energy paths connecting them) of the full dimensional (81D) intermolecular potential energy surface associated with the non-covalent interactions between the NO2 radical and the pyrene (C16H10) molecule. The whole procedure is (quasi) fully automated. We have used our recent algorithm vdW-TSSCDS as implemented on the freely-available AutoMekin software package. To this end, a series of inexpensive classical trajectories using forces from a low-level (semi-empirical) theory are used to sample the configuration space of the system in the search for candidates to first order saddle points. These guess structures are determined by means of a graph-theory based algorithm using the concept of adjacency matrix. Low-level optimizations are followed by re-optimizations at a final high-level of theory (DFT and CCSD(T)-F12 in our case.). The resulting set of stationary points and paths connecting them constitutes the so-called reaction network. In the case of NO2-pyrene, this network exhibits four major basins which can be characterized by their point-group symmetry. A central one, of global C2 symmetry, comprises the global minimum (as well as all other permutationally related conformers) together with the corresponding C2v saddle points connecting them. This central basin is connected to three others of lower C1 symmetry. The latter can be distinguished by the projection of the position of the NO2 nitrogen atom on the pyrene plane in combination with the relative orientation of the oxygen pair pointing either inwards, outwards, upwards or downwards.

Mechanism of Ultraviolet-Induced CO Desorption from CO Ice: Role of Vibrational Relaxation Highlighted.

Although UV photon-induced CO ice desorption is clearly observed in many cold regions of the Universe as well as in the laboratory, the fundamental question of the mechanisms involved at the molecular scale remains debated. In particular, the exact nature of the involved energy transfers in the indirect desorption pathway highlighted in previous experiments is not explained. Using ab initio molecular dynamics simulations, we explore a new indirect desorption mechanism in which a highly vibrationally excited CO (v=40) within an aggregate of 50 CO molecules triggers the desorption of molecules at the surface. The desorption originates first from a mutual attraction between the excited molecule and the surrounding molecule(s), followed by a cascade of energy transfers, ultimately resulting in the desorption of vibrationally cold CO (∼95% in v=0). The theoretical vibrational distribution, along with the kinetic energy one, which peaks around 25 meV for CO with low rotational levels (v=0, J<7), is in excellent agreement with the results obtained from VUV laser induced desorption (157 nm) of CO (v=0, 1) probed using REMPI.

Absolute Photoabsorption Cross-Sections of Methanol for Terrestrial and Astrophysical Relevance.

We investigate the methanol absorption spectrum in the range 5.5-10.8 eV to provide accurate and absolute cross-sections values. The main goal of this study is to provide a comprehensive analysis of methanol electronic-state spectroscopy by employing high-resolution vacuum ultraviolet (VUV) photoabsorption measurements together with state-of-the-art quantum chemical calculation methods. The VUV spectrum reveals several new features that are not previously reported in literature, for n > 3 in the transitions (nsσ(a') ← (2a″)) (1A' ← X̃1A') and (nsσ, npσ, npσ', ndσ ← (7a')) (1A' ← X̃1A'), and with particular relevance to vibrational progressions of the CH3 rocking mode, v11'(a″), mode in the (3pπ(a″) ← (2a″)) (21A' ← X̃1A') absorption band at 8.318 eV. The measured absolute photoabsorption cross-sections have subsequently been used to calculate the photolysis lifetime of methanol in the Earth's atmosphere from the ground level up to the limit of the stratosphere (50 km altitude). This shows that solar photolysis plays a negligible role in the removal of methanol from the lower atmosphere compared with competing sink mechanisms. Torsional potential energy scans, as a function of the internal rotation angle for the ground and first Rydberg states, have also been calculated as part of this investigation.

Spectroscopy and Photodissociation of the Perfluorooctanoate Anion.

Perfluorocarbons, a class of fully fluorinated compounds, are highly persistent and toxic pollutants that are receiving increasing attention due to their widespread environmental distribution. In this study, attention was focused on one compound in particular, namely, perfluorooctanoic acid (PFOA). The first investigation of the UV/VUV photochemistry of the PFOA anion in the gas phase by action spectroscopy of selected ions is reported. Two main relaxation channels were identified: photodissociation and photodetachment. Absolute cross sections for the individual observed processes were measured. DFT calculations and natural transition orbital analysis were carried out to help in the interpretation of the experimental results.

Carotenoids: Experimental Ionization Energies and Capacity at Inhibiting Lipid Peroxidation in a Chemical Model of Dietary Oxidative Stress.

Carotenoids are important natural pigments and micronutrients contributing to health prevention by several mechanisms, including their electron-donating (antioxidant) activity. In this work, a large series of carotenoids, including 11 carotenes and 14 xanthophylls, have been investigated by wavelength-resolved atmospheric pressure photoionization mass spectrometry (DISCO line of SOLEIL synchrotron), thus allowing the experimental determination of their ionization energy (IE) for the first time. On the other hand, the carotenoids have been also investigated for their ability to inhibit the heme iron-induced peroxidation of linoleic acid in mildly acidic micelles, a simple but relevant chemical model of oxidative stress in the gastric compartment. Thus, the carotenoids can be easily classified from IC50 concentrations deduced from the time dependence of the lipid hydroperoxide concentration. With a selection of two carotenes and three xanthophylls a quantitative analysis is also provided to extract stoichio-kinetic parameters. The influence of the carotenoid structure (number of conjugated carbon-carbon double bonds, presence of terminal six-membered rings, hydroxyl, keto, and/or epoxy groups) on the IE, IC50, and stoichio-kinetic parameters is discussed in details. The data show that the antioxidant activity of carotenes is well correlated to their electron-donating capacity, which itself largely depends on the length of the conjugated polyene chain. By contrast, the IE of xanthophylls is poorly correlated to the polyene chain length because of the strong, and sometimes unexpected, electronic effects of the O-atoms. Although IE remains an approximate predictor of the antioxidant activity of xanthophylls, other factors (interaction with the aqueous phase, competing radical-scavenging mechanisms, the residual activity of the antioxidant's oxidation products) probably play a significant role.

Photoionization of the Buckminsterfullerene Cation.

Photoionization of a buckminsterfullerene ion is investigated using an ion trap and a merged beam setup coupled to synchrotron radiation beamlines and compared to theoretical calculations. Absolute measurements derived from the ion trap experiment allow discrepancies concerning the photoionization cross section of C60+ to be solved.

Water-Induced Organization of Palmitic Acid at the Surface of a Model Sea Salt Particle: A Molecular Dynamics Study.

Marine aerosols represent the most important aerosol fraction in the Earth atmosphere. Field studies have revealed that fatty acids form an organic film at the surface of sea salt particles, altering the properties of the aerosol. By means of classical molecular dynamics simulation, the surface organization of palmitic acid (PA) on a salt surface, NaCl, has been investigated at two different temperatures, 235 and 300 K, and with relative humidity varying from 0 to 40%. Calculations show that water promotes the formation of well-ordered close-packed PA islands. As a result, some area of the salt may be covered by water only or by PA molecules supported by water. Depending on the relative humidity, the hydrophilic/hydrophobic character of the sea salt surface varies. This heterogeneous coating gives rise locally to very different surface properties and hence may affect the transfer of gas phase species to the salt and their reactivity.

Ground state analytical ab initio intermolecular potential for the Cl(2)-water system.

The chlorine/water interface is of crucial importance in the context of atmospheric chemistry. Modeling the structure and dynamics at this interface requires an accurate description of the interaction potential energy surfaces. We propose here an analytical intermolecular potential that reproduces the interaction between the Cl2 molecule and a water molecule. Our functional form is fitted to a set of high level ab initio data using the coupled-cluster single double (triple)/aug-cc-p-VTZ level of electronic structure theory for the Cl2 - H2O complex. The potential fitted to reproduce the three minima structures of 1:1 complex is validated by the comparison of ab initio results of Cl2 interacting with an increasing number of water molecules. Finally, the model potential is used to study the physisorption of Cl2 on a perfectly ordered hexagonal ice slab. The calculated adsorption energy, in the range 0.27 eV, shows a good agreement with previous experimental results.

A global ab initio potential energy surface for the X2A' ground state of the Si + OH → SiO + H reaction.

We report the first global potential energy surface (PES) for the X(2)A' ground electronic state of the Si((3)P) + OH(X(2)Π) → SiO(X(1)Σg(+)) + H((2)S) reaction. The PES is based on a large number of ab initio energies obtained from multireference configuration interaction calculations plus Davidson correction (MRCI+Q) using basis sets of quadruple zeta quality. Corrections were applied to the ab initio energies in the reactant channel allowing a proper description of long-range interactions between Si((3)P) and OH(X(2)Π). An analytical representation of the global PES has been developed by means of the reproducing kernel Hilbert space method. The reaction is found barrierless. Two minima, corresponding to the SiOH and HSiO isomers, and six saddle points, among which the isomerization transition state, have been characterized on the PES. The vibrational spectra of the SiOH/HSiO radicals have been computed from second-order perturbation theory and quantum dynamics methods. The structural, energetic, and spectroscopic properties of the two isomers are in good agreement with experimental data and previous high quality calculations.

The H + CO ⇌ HCO reaction studied by ab initio benchmark calculations.

The title reaction has been calculated using complete active space self-consistent field and internally contracted multi-reference configuration interaction, including Davidson correction, calculations. Dunning's correlation consistent atomic basis sets, together with several complete basis set extrapolation schemes, were employed. Core-valence and scalar relativistic effects were also taken into account, as well as anharmonicity of the vibrational modes. Core-valence correlation appears to have a large impact on the calculated frequencies, spectroscopic constants, and on the energetics. In particular, the best estimate for the HCO (DCO) formation barrier height at 0 K, 4.54 ± 0.14 (4.43 ± 0.14) kcal mol(-1) is larger than previous theoretical works and well above the usually accepted value of 2.0 ± 0.4 kcal mol(-1), measured at room temperature. Inclusion of temperature and entropy at 298 K does not seem to be able to solve this discrepancy. The present theoretical barrier height is therefore the recommended value. The exo-ergicity of the HCO (DCO) dissociation reaction, predicted to be -13.36 ± 0.57 (-14.72 ± 0.57) kcal mol(-1), is slightly below the experimental value. Finally, all tested density functionals fail to reproduce accurately both the formation and dissociation barriers.

The vibrational structure of the oxygen K-shell spectra in acenaphthenequinones: an ab initio study.

The vibrational structure of the K-shell O1s → π∗ of acenaphthenequinone C(12)H(6)O(2) and its halogenated compound C(12)H(2)Br(2)Cl(2)O(2) has been simulated using an entirely ab initio approach. For both molecules, analysis of the calculated Franck-Condon factors confirm without ambiguity that, contrary to initial claims, the C-H stretching modes are not modified in the core states and are not excited. For C(12)H(6)O(2), the vibrational fine structure appears to be mainly due to three modes, involving C=O∗ asymmetric stretch and in-plane ring deformation modes, due to the symmetry breaking of the core state. For C(12)H(2)Br(2)Cl(2)O(2), the vibrational excitation arises essentially from the C=O∗ asymmetric stretch, with numerous secondary peaks arising from hot and combination bands. For both molecules, these bands are probably responsible for the asymmetry deduced in the experimental fits using a unique Morse potential and initially assigned to anharmonic effects.

Theoretical investigation of the isomerization of trans-HCOH to H2CO: an example of a water-catalyzed reaction.

A concerted hydrogen atom transfer mechanism has been elucidated for the isomerization of trans-HCOH to H(2)CO using a variety of ab initio and density functional theory methods. This work places specific emphasis on the role water molecules can play as a catalyst for this reaction and the mechanism by which this is achieved. This is of particular importance in the context of molecular ices in the interstellar medium because the presence of water in this reaction reduces the activation energy by at least 80%, which is accompanied by a significant enhancement of the reaction rate, at ≤300 K.