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1.
Acta Crystallogr D Biol Crystallogr ; 61(Pt 8): 1041-8, 2005 Aug.
Article in English | MEDLINE | ID: mdl-16041068

ABSTRACT

In the vapor-diffusion protein-crystallization method, a small drop containing protein sample mixed with a crystallization solution is equilibrated against a reservoir solution in a sealed chamber. Whereas the chemical composition of the crystallization solution is critical for success, the primary role of the reservoir solution is to slowly concentrate the crystallization drop in a controlled fashion. Accordingly, it might be possible to use any reservoir solution of appropriate dehydrating strength. The important practical consequence is that many different experiments can share the same reservoir solution. This approach, called the ;shared reservoir solution' method, significantly simplifies manual and robotic experiment setup, reduces cost and allows a completely new design of optically superior and higher density crystallization plates. Although this research was motivated by these practical advantages, recent reports and the authors' results indicate that this method may actually increase crystallization success. The authors suggest that this may indicate that a protein has a preferred water activity for crystallization. Here, present practical and theoretical considerations as well as experimental tests of the shared reservoir solution method are presented.


Subject(s)
Crystallization/methods , Proteins/chemistry , Aldose-Ketose Isomerases/chemistry , Chemical Precipitation , Crystallization/instrumentation , Desiccation/methods , Diffusion , Muramidase/chemistry , Plant Proteins/chemistry , Polyethylene Glycols , Sodium Chloride , Solutions
2.
Acta Crystallogr D Biol Crystallogr ; 61(Pt 1): 80-7, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15608379

ABSTRACT

High-resolution protein structures are becoming more common owing to the availability of increasingly brilliant synchrotron X-ray sources. However, to withstand the increased X-ray dose the crystals must be held at cryogenic temperatures. To compare the benefit of increased resolution with the drawback of potential temperature-induced changes, three room-temperature and three cryogenic data sets for PAK pilin have been collected at resolutions between 1.8 and 0.78 A. The results show that although the high-resolution cryogenic structures are more precise and more detailed, they also show systematic deviations from the room-temperature structures. Small but significant differences are even observed in the structural core, whilst more extensive changes occur at the protein surface. These differences can affect biological interpretations, especially because many important biological processes take place at the protein surface. Accordingly, although high-quality cryogenic synchrotron data is extremely valuable to protein crystallography, room-temperature structures are still desirable, especially if the research question involves protein features that are sensitive to temperature-induced changes.


Subject(s)
Crystallography, X-Ray/methods , Freezing , Crystallography , Disulfides/chemistry , Electrons , Fimbriae Proteins/chemistry , Hydrogen , Models, Molecular , Protein Conformation , Pseudomonas aeruginosa/metabolism , Synchrotrons , Temperature , Water/chemistry
3.
Acta Crystallogr D Biol Crystallogr ; 59(Pt 10): 1797-800, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14501120

ABSTRACT

Reducing protein consumption during crystallization screening is of utmost importance to crystallographers because of the time, effort and money that goes into producing pure protein. One approach is to reduce sample volumes with robotics, but a patent and the high cost of equipment limits access. Here, it is shown that the same result can be obtained by reducing the sample concentration in a modified vapour-diffusion protocol, the dilution method. In this protocol, the protein and mother liquor in the crystallization drop are both diluted, while the mother liquor in the well remains undiluted. Vapour diffusion will shrink the initial volume of the crystallization drop, e.g. 1 micro l or more, to a drop size equivalent to one dispensed by a robot. This new crystallization method circumvents some of the current problems associated with robotic crystallization screening trials. Because of the large initial volume of the crystallization drop, the evaporation problem is eliminated and dispensing accuracy is improved. In addition, the likelihood that the crystallization experiment starts in the undersaturated region is increased.


Subject(s)
Aldose-Ketose Isomerases/chemistry , Crystallization/methods , Muramidase/chemistry , Animals , Chemical Precipitation , Chickens , Diffusion , Solubility , Volatilization
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