Raman and infrared spectra, conformational stability, ab initio calculations and assignment of fundamentals for 1-bromo-3-fluoropropane.

The infrared and Raman spectrum of 1-bromo-3-fluoropropane is reported in the gas, liquid, amorphous solid and annealed polycrystalline states. Only one of the five possible conformers is stable in the crystal, designated the C conformer. The disordered phases show the presence of several other conformers of higher energy, due entirely to conformers designated B and D. Ab initio calculations were performed as rhf/4-31g*/MIDI-4*, rhf/6-31g* and mp2/6-31g* (both frozen core and full electron correlation) for all five conformers. The scaled harmonic force field obtained using the mp2 = full/6-31g* level of the theory is reported for the most stable conformer together with an assignment of fundamentals and potential energy distributions for local symmetry coordinates. Selected computational results are reported for all conformers together with scaled and unscaled wavenumbers and infrared and Raman intensities. The temperature dependent Raman spectrum is reported from room temperature to -100 degrees C. Only three of the five possible conformers can be identified in this spectrum, and there is no evidence of the other two. The energy differences between conformers in the liquid phase were found experimentally to be 132+/-27, 232+/-46 and 106+/-30 cm(-1), respectively between the D and C, B and C and D and B conformers. These differences are substantially less than the differences calculated ab initio at the highest level of the theory used, suggesting that energy differences were decreased by large dipole-dipole interactions present in the liquid but not in the gas.

Infrared and Raman spectra, ab initio calculations of structure and vibrational assignment of 1-fluoro-2-butyne.

The infrared spectra (3500-50 cm(-1)) of the gas and solid and the Raman spectra (3500-50 cm(-1)) of the liquid and solid have been recorded for 1-fluoro-2-butyne, CH3-C-triple bond-C-CH2F. Equilibrium geometries and energies have been determined by ab initio and hybrid DFT methods using a number of basis sets. A vibrational assignment is proposed based on the force constants, relative intensities, depolarization ratios from the ab initio and DFT calculations and on vibrational-rotational band contours obtained using the calculated equilibrium geometries. From calculated energies it is shown that the CH3 group exhibits almost completely free rotation which is in agreement with the observation of Coriolis sub-band structure in two of the degenerate methyl vibrations. The results are compared to the corresponding quantities for some similar molecules.

Conformational studies of cyclopropane carboxaldehydehyde from temperature-dependent FT-IR spectra of xenon solutions.

Variable temperature ( -60 to 100 degrees C) studies of the infrared spectra (3,500-400 cm(-1) of cyclopropane carboxaldehyde. c-C3H5CHO, dissolved in liquid xenon have been recorded. Utilizing several doublets due to the syn and anti conformers. the enthalpy difference has been determined to be 95 +/- 8 cm(-1) (1.14 +/- 0.10 kJ/mol) with the (anti conformer (oxygen atom trans to the three-member ring) the more stable rotamer. From this deltaH value, along with assigned torsional transitions for both the anti and svi, conformers, the potential function governing the conformational interchange has been estimated. Using the new infrared data from the xenon solution, along with some additional Raman data, and ab initio predictions from MP2/6-31G(d) calculations some reassignments of the fundamentals have been made. Ab initio calculations have been carried out with several different basis sets upto 6-311 +/- +G(d,p) with full electron correlation by the perturbation method to second order from which structural parameters and conformational stabilities have been determined. From all of the ab initio calculations, the syn conformer is predicted to be the more stable which is at variance with the experimental results. The spectroscopic and theoretical results are compared to the corresponding quantities for some similar molecules.

Spectra and structure of small ring compounds. LXVII vibrational spectra, variable temperature FT-IR spectra of krypton solutions, conformational stability and ab initio calculations of 1-bromosilacyclobutane.

The infrared (3,200-30 cm(-1) spectra of gaseous and solid 1-bromosilacyclobutane, c-C3H6SiBrH, have been recorded. Additionally, the Raman spectra of the liquid (3,200- 30 cm(-1) with quantitative depolarization values and the solid have been recorded. Both the equatorial and the axial conformers have been identified in the fluid phases, Variable temperature ( - 105 to - 150 degrees C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data the enthalpy difference has been determined to be 182 +/- 18 cm(-1) (2.18 +/- 0.22 kJ/mol) with the equatorial conformer the more stable rotamer and only conformer remaining in the annealing solid. At ambient temperature there is approximately 22% of the axial conformer present in the vapor phase. A complete vibrational assignment is proposed for both conformers based on infrared contours, relative intensities, depolarization values and group frequencies. The vibrational assignments are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G(d) calculations. From the frequencies of the Si-H stretch, the Si-H bond distance of 1.483 A has been determined for both the equatorial and the axial conformers. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G(d) and 6-311 +/- G(d,p) basis sets at levels of Hartree Fock (RHF) and/or Moller- Plesset with full electron correlation by the perturbation method to the second order (MP2). The results are discussed and compared to those obtained for some similar molecules.

Infrared and Raman spectra, conformational stability, ab initio calculations and vibrational assignments for trans-3-chloropropenoyl chloride.

The infrared (3500-30 cm(-1)) spectra of gaseous and solid and the Raman (3500-200 cm(-1)) spectra of the liquid with quantitative depolarization ratios and solid trans-3-chloropropenoyl chloride (trans-ClCHCHCClO) have been recorded. These data indicate that both the anti (carbonyl bond trans to the carbon-carbon double bond) and syn conformers are present in the fluid states but only the anti conformer is present in the crystalline state. The mid-infrared spectra of the sample dissolved in liquid xenon as a function of temperature (-55 to -100 degrees C) have been recorded. Utilizing conformer pairs at 870 and 725 cm(-1), 1215 and 1029 cm(-1), and 1215 and 1228 cm(-1), the enthalpy difference has been determined to be 136+/-5 cm(-1) (389+/-14 cal mol(-1)) with the anti conformer the more stable form. Optimized geometries and conformational stabilities were obtained from ab initio calculations at the levels of RHF/6-31G(d), MP2/6-31G(d), MP2/6-311 + + G(d,p), MP2/6-311 + + G(2d,2p) and MP2/6-311 + + G(2df,2pd) with only the latter two calculations predicting the anti rotamer to be the more stable form. The vibrational frequencies, harmonic force constants and infrared intensities were obtained from the MP2/6-31G(d) calculations, whereas the Raman activities and depolarization values were obtained from the RHF/6-31G(d) calculations. The spectra are interpreted in detail and the results are compared with those obtained for some related molecules.

Spectra and structure of silicon containing compounds. XXVII. Raman and infrared spectra, conformational stability, vibrational assignment and ab initio calculations of vinyldichlorosilane.

The infrared (3200-30 cm(-1) spectra of gaseous and solid and the Raman spectra of liquid (3200-30 cm(-1), with quantitative depolarization values, and solid vinyldichlorosilane, CH2=CHSiHCl2, have been recorded. Both the gauche and the cis conformers have been identified in the fluid phases. Variable temperature (105-150 degrees C) studies of the infrared spectra of the sample dissolved in liquid krypton have been carried out. From these data the enthalpy difference has been determined to be 20 +/- 5 cm(-1) (235 +/- 59 J mol(-1) with the gauche conformer the more stable rotamer. It was not possible to obtain a single conformer in the solid even with repeated annealing of the sample. The experimental enthalpy difference is in agreement with the prediction from MP2/6-311 + G(2d,2p) ab initio calculations with full electron correlation. However, when smaller basis sets, i.e. 6-31G(d) and 6-311 + G(d,p) were utilized the cis conformer was predicted to be the more stable form. Complete vibrational assignments are proposed for both conformers based on infrared contours, relative infrared and Raman intensities, depolarization values and group frequencies, which are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G(d) calculations. From the frequencies of the Si-H stretches, the Si-H bond distance of 1.474 A has been determined for both the gauche and the cis conformers. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing the 6-31G(d), 6-311 + G(d,p) and 6-311 + (2d,2p) basis sets at level of Hartree-Fock (RHF) and/or Moller Plesset to the second order (MP2) with full electron correlation. The potential energy terms for the conformer interconversion have been obtained from the MP2/6-31G(d) calculations. The results are discussed and compared with those obtained for some similar molecules.

Infrared and Raman spectra, conformational stability, barriers to internal rotation, normal-coordinate calculations and vibrational assignments for vinyl silyl bromide.

The infrared (3200-30 cm(-1) spectra of gaseous and solid, the Raman spectra (3200-30 cm(-1)) of the liquid and solid vinyl silyl bromide, CH2CHSiH2Br, have been recorded. Additionally, quantitative depolarization values have been obtained. Both the gauche and cis conformers have been identified in the fluid phases but only the gauche conformer remains in the solid. Variable temperature studies from 0 to -87 degrees C of the Raman spectrum of the liquid was carried out. From these data, the enthalpy difference has been determined to be 22 +/- 6 cm(-1) (0.26 +/- 0.08 kJ/mol), with the gauche conformer being the more stable form. The predictions from the ab initio calculations up to MP2/6-311 + + G(2d,2p) basis set favor the gauche as the more stable form. A complete vibrational assignment is proposed for both the gauche and cis conformers based on infrared band contours, relative intensities, depolarization values and group frequencies. The vibrational assignments are supported by normal coordinate calculations utilizing the force constants from ab initio MP2/6-31G(d) calculations and the potential energy terms for the conformer interconversion have been obtained from the same calculations. Complete equilibrium geometries have been determined for both rotamers by ab initio calculations employing a variety of basis sets up to 6-311 + + G(2d,2p) at levels of restricted Hartree-Fock (RHF) and/or Moller-Plesset (MP) to second order. The results are discussed and compared to those obtained for some similar molecules.

Conformational stability of CH3CH2PH2BH3 from temperature dependent FT-IR spectra of xenon solutions and r0 structural parameters.

Variable temperature (-55--100 degrees C) studies of the infrared spectra (3500-400 cm(-1)) of ethylphosphine-borane, CH3CH2PH2BH3, and ethylphosphine-borane-d5 dissolved in liquid xenon have been recorded. From these data, the enthalpy difference has been determined to be 86 +/- 8 cm(-1) (1.03 +/- 0.10 kJ/mol), with the trans conformer the more stable rotamer. Complete vibrational assignments are presented for both conformers, which are consistent with the predicted frequencies obtained from the ab initio MP2/6-31G(d) calculations. The optimized geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, and depolarization ratios have been obtained from RHF/6-31G(d) and/or MP2/6-31G(d) ab initio calculations. These quantities are compared to the corresponding experimental quantities when appropriate as well as with some corresponding results for some similar molecules. The r0 structural parameters have been obtained from a combination of the previously reported microwave rotational constants and ab initio predicted parameters.

Environmental Analysis by ab Initio Quantum Mechanical Computation and Gas Chromatography/Fourier Transform Infrared Spectrometry.

Computational chemistry, in conjunction with gas chromatography/mass spectrometry/Fourier transform infrared spectrometry (GC/MS/FT-IR), was used to tentatively identify seven tetrachlorobutadiene (TCBD) isomers detected in an environmental sample. Computation of the TCBD infrared spectra was performed with the Gaussian quantum chemistry software. The Hartree-Fock/6-31G* level of theory was employed, with IR frequencies scaled by a standard factor of 0.89. This approach shows great promise as a means of characterizing or confirming environmental analyte identifications when standard spectra, or pure standards required to measure standard spectra, are unavailable.

Fourier transform Raman spectroscopy of synthetic and biological calcium phosphates.

Fourier-transform (FT) Raman spectroscopy was used to characterize the organic and mineral components of biological and synthetic calcium phosphate minerals. Raman spectroscopy provides information on biological minerals that is complimentary to more widely used infrared methodologies as some infrared-inactive vibrational modes are Raman-active. The application of FT-Raman technology has, for the first time, enabled the problems of high sample fluorescence and low signal-to-noise that are inherent in calcified tissues to be overcome. Raman spectra of calcium phosphates are dominated by a very strong band near 960 cm-1 that arises from the symmetric stretching mode (v1) of the phosphate group. Other Raman-active phosphate vibrational bands are seen at approximately 1075 (v3), 590 (v4), and 435 cm-1 (v2). Minerals containing acidic phosphate groups show additional vibrational modes. The different calcium phosphate mineral phases can be distinguished from one another by the relative positions and shapes of these bands in the Raman spectra. FT-Raman spectra of nascent, nonmineralized matrix vesicles (MV) show a distinct absence of the phosphate v1 band even though these structures are rich in calcium and phosphate. Similar results were seen with milk casein and synthetic Ca-phosphatidyl-serine-PO4 complexes. Hence, the phosphate and/or acidic phosphate ions in these noncrystalline biological calcium phosphates is in a molecular environment that differs from that in synthetic amorphous calcium phosphate. In MV, the first distinct mineral phase to form contained acidic phosphate bands similar to those seen in octacalcium phosphate. The mineral phase present in fully mineralized MV was much more apatitic, resembling that found in bones and teeth.(ABSTRACT TRUNCATED AT 250 WORDS)

The induction of filamentous growth in Escherichia coli by ruthenium and palladium complexes.

Cis-chloroammine complexes of platinum have been shown to induce several biological effects. These include induction of filamentous growth in Escherichia coli as well as induction of phage production from lysogenic strains of Escherichia coli. Cis-chloroammine complexes of platinum have also been proven effective as a treatment for several animal tumors. In general, the effectiveness of such compounds is determined by a combination of an internal polar nature coupled with an overall electrical neutrality. We have extended these studies to include other complexes of the group VIII elements. In the research reported here, complexes of ruthenium were shown to induce filamentous growth in E. coli. Cis-Ru(NH3)3Cl3 produced this effect at a concentration of 6 mug/ml, comparable to the required concentration of cis-Pt(NH3)2Cl2 for the same effect. The charged complex, K2RuCl5 - H2O, induced filamentous growth but a significantly higher concentration of this ruthenium complex was necessary. Several palladium complexes were also tested. They proved to be toxic at relatively high concentrations and had no effect at lower concentrations. The proposed mechanism of action of the platinum complexes is the hydrolysis of two cis-chloride ligands followed by binding to DNA which reduces the synthesis of new DNA. The kinetic data on hydrolysis, the required cis-chloride ligands, electrical neutrality, and the selective action on various bacteria indicate that ruthenium and platinum interact by a similar mechanism.