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1.
Sci Rep ; 13(1): 6273, 2023 04 18.
Article in English | MEDLINE | ID: mdl-37072464

ABSTRACT

Self-assembling peptides can be used for the regeneration of severely damaged skin. They can act as scaffolds for skin cells and as a reservoir of active compounds, to accelerate scarless wound healing. To overcome repeated administration of peptides which accelerate healing, we report development of three new peptide biomaterials based on the RADA16-I hydrogel functionalized with a sequence (AAPV) cleaved by human neutrophil elastase and short biologically active peptide motifs, namely GHK, KGHK and RDKVYR. The peptide hybrids were investigated for their structural aspects using circular dichroism, thioflavin T assay, transmission electron microscopy, and atomic force microscopy, as well as their rheological properties and stability in different fluids such as water or plasma, and their susceptibility to digestion by enzymes present in the wound environment. In addition, the morphology of the RADA-peptide hydrogels was examined with a unique technique called scanning electron cryomicroscopy. These experiments enabled us to verify if the designed peptides increased the bioactivity of the gel without disturbing its gelling processes. We demonstrate that the physicochemical properties of the designed hybrids were similar to those of the original RADA16-I. The materials behaved as expected, leaving the active motif free when treated with elastase. XTT and LDH tests on fibroblasts and keratinocytes were performed to assess the cytotoxicity of the RADA16-I hybrids, while the viability of cells treated with RADA16-I hybrids was evaluated in a model of human dermal fibroblasts. The hybrid peptides revealed no cytotoxicity; the cells grew and proliferated better than after treatment with RADA16-I alone. Improved wound healing following topical delivery of RADA-GHK and RADA-KGHK was demonstrated using a model of dorsal skin injury in mice and histological analyses. The presented results indicate further research is warranted into the engineered peptides as scaffolds for wound healing and tissue engineering.


Subject(s)
Hydrogels , Protein Sorting Signals , Mice , Humans , Animals , Hydrogels/pharmacology , Hydrogels/chemistry , Peptides/pharmacology , Peptides/chemistry , Wound Healing
2.
Biomolecules ; 12(8)2022 08 18.
Article in English | MEDLINE | ID: mdl-36009034

ABSTRACT

The UNited RESidue (UNRES) model of polypeptide chains was applied to study the association of 20 peptides with sizes ranging from 6 to 32 amino-acid residues. Twelve of those were potentially aggregating hexa- or heptapeptides excised from larger proteins, while the remaining eight contained potentially aggregating sequences, functionalized by attaching larger ends rich in charged residues. For 13 peptides, the experimental data of aggregation were used. The remaining seven were synthesized, and their properties were measured in this work. Multiplexed replica-exchange simulations of eight-chain systems were conducted at 12 temperatures from 260 to 370 K at concentrations from 0.421 to 5.78 mM, corresponding to the experimental conditions. The temperature profiles of the fractions of monomers and octamers showed a clear transition corresponding to aggregate dissociation. Low simulated transition temperatures were obtained for the peptides, which did not precipitate after incubation, as well as for the H-GNNQQNY-NH2 prion-protein fragment, which forms small fibrils. A substantial amount of inter-strand ß-sheets was found in most of the systems. The results suggest that UNRES simulations can be used to assess peptide aggregation except for glutamine- and asparagine-rich peptides, for which a revision of the UNRES sidechain-sidechain interaction potentials appears necessary.


Subject(s)
Peptides , Proteins , Molecular Dynamics Simulation , Peptides/chemistry , Protein Conformation , Proteins/chemistry , Temperature
3.
Sci Rep ; 12(1): 3703, 2022 03 08.
Article in English | MEDLINE | ID: mdl-35260633

ABSTRACT

Lung cancer is considered to account for approximately one-fifth of all malignant tumor-related deaths worldwide and is therefore one of the most lethal malignancies. Pyrazole scaffold possesses a wide range of biological and pharmacological activities, which play important roles in medicinal chemistry. The present study reports the synthesis and in vitro biological characterization of nine pyrazoles derived from chalcones as potential anticancer agents for non-small cell lung cancer A-549, H226, and H460 cell lines. Most of the compounds efficiently inhibited the growth of all the tested cancer cell lines at micromolar concentrations. One of the most active compounds (PCH-1) was further evaluated for its effect on cell cycle distribution, apoptosis, migration, epithelial-mesenchymal transition, and oxidative stress. Furthermore, studies on the mechanism of action revealed that PCH-1 disrupts microtubule assembly, leading to cancer cell death. Molecular modeling studies confirmed the potent interaction of PCH-1 with the vinblastine binding site on tubulin. Overall, this study provides novel opportunities to identify anticancer agents in the pyrazole series.


Subject(s)
Antineoplastic Agents , Carcinoma, Non-Small-Cell Lung , Chalcone , Chalcones , Lung Neoplasms , Antineoplastic Agents/therapeutic use , Apoptosis , Carcinoma, Non-Small-Cell Lung/drug therapy , Cell Line, Tumor , Cell Proliferation , Chalcone/pharmacology , Chalcones/pharmacology , Drug Screening Assays, Antitumor , Humans , Lung Neoplasms/drug therapy , Pyrazoles/therapeutic use , Structure-Activity Relationship , Tubulin/metabolism
4.
Adv Wound Care (New Rochelle) ; 9(12): 657-675, 2020 12.
Article in English | MEDLINE | ID: mdl-33124966

ABSTRACT

Objective: This study evaluated the use of novel peptides derived from platelet-derived growth factor (PDGF-BB) as potential wound healing stimulants. One of the compounds (named PDGF2) was subjected for further research after cytotoxicity and proliferation assays on human skin cells. Further investigation included evaluation of: migration and chemotaxis of skin cells, immunological and allergic safety, the transcriptional analyses of adipose-derived stem cells (ASCs) and dermal fibroblasts stimulated with PDGF2, and the use of dorsal skin wound injury model to evaluate the effect of wound healing in mice. Approach: Colorimetric lactate dehydrogenase and tetrazolium assays were used to evaluate the cytotoxicity and the effect on proliferation. PDGF2 effect on migration and chemotaxis was also checked. Immunological safety and allergic potential were evaluated with a lymphocyte activation and basophil activation test. Transcriptional profiles of ASCs and primary fibroblasts were assessed after stimulation with PDGF2. Eight-week-old BALB/c female mice were used for dorsal skin wound injury model. Results: PDGF2 showed low cytotoxicity, pro-proliferative effects on human skin cells, high immunological safety, and accelerated wound healing in mouse model. Furthermore, transcriptomic analysis of ASCs and fibroblasts revealed the activation of processes involved in wound healing and indicated its safety. Innovation: A novel peptide derived from PDGF-BB was proved to be safe drug candidate in wound healing. We also present a multifaceted in vitro model for the initial screening of new compounds that may be potentially useful in wound healing stimulation. Conclusion: The results show that peptide derived from PDGF-BB is a promising drug candidate for wound treatment.


Subject(s)
Adipose Tissue/cytology , Becaplermin/pharmacology , Fibroblasts/drug effects , Stem Cells/cytology , Wound Healing/drug effects , Adipose Tissue/metabolism , Animals , Chemotaxis/drug effects , Female , Humans , Mice , Mice, Inbred BALB C , Pharmaceutical Preparations , Recombinant Proteins , Skin/cytology , Stem Cells/metabolism
5.
Molecules ; 25(12)2020 Jun 23.
Article in English | MEDLINE | ID: mdl-32585846

ABSTRACT

Regeneration and wound healing are vital to tissue homeostasis and organism survival. One of the biggest challenges of today's science and medicine is finding methods and factors to stimulate these processes in the human body. Effective solutions to promote regenerative responses will accelerate advances in tissue engineering, regenerative medicine, transplantology, and a number of other clinical specialties. In this study, we assessed the potential efficacy of a synthetic hexapeptide, RDKVYR, for the stimulation of tissue repair and wound healing. The hexapeptide is marketed under the name "Imunofan" (IM) as an immunostimulant. IM displayed stability in aqueous solutions, while in plasma it was rapidly bound by albumins. Structural analyses demonstrated the conformational flexibility of the peptide. Tests in human fibroblast and keratinocyte cell lines showed that IM exerted a statistically significant (p < 0.05) pro-proliferative activity (30-40% and 20-50% increase in proliferation of fibroblast and keratinocytes, respectively), revealed no cytotoxicity over a vast range of concentrations (p < 0.05), and had no allergic properties. IM was found to induce significant transcriptional responses, such as enhanced activity of genes involved in active DNA demethylation (p < 0.05) in fibroblasts and activation of genes involved in immune responses, migration, and chemotaxis in adipose-derived stem cells derived from surgery donors. Experiments in a model of ear pinna injury in mice indicated that IM moderately promoted tissue repair (8% in BALB/c and 36% in C57BL/6 in comparison to control).


Subject(s)
Cell Proliferation/drug effects , Oligopeptides/pharmacology , Skin/pathology , Wound Healing , Albumins/metabolism , Animals , Basophils/drug effects , Cell Death/drug effects , Cell Line , Chemotaxis/drug effects , Cytokines/metabolism , DNA Methylation/drug effects , Ear/pathology , Fibroblasts/cytology , Fibroblasts/drug effects , HaCaT Cells/cytology , HaCaT Cells/drug effects , Humans , Injections, Subcutaneous , Mice, Inbred BALB C , Mice, Inbred C57BL , Oligopeptides/blood , Oligopeptides/chemistry , Oligopeptides/metabolism , Protein Stability/drug effects , Stem Cells/cytology , Stem Cells/drug effects , Transcription, Genetic/drug effects
6.
Protein Pept Lett ; 26(6): 423-434, 2019 Jul 04.
Article in English | MEDLINE | ID: mdl-30864495

ABSTRACT

BACKGROUND: Antibacterial peptidyl derivative - Cystapep 1, was previously found to be active both against antibiotic-resistant staphylococci and streptococci as well as antibioticsusceptible strains of these species. Therefore, it is a promising lead compound to search for new antimicrobial peptidomimetics. OBJECTIVES: We focused on identifying structural elements that are responsible for the biological activity of Cystapep 1 and its five analogues. We tried to find an answer to the question about the mechanism of action of the tested compounds. Therefore, we have investigated in details the possibility of interacting these compounds with biological membrane mimetics. METHODS: The subject compounds were synthesized in solution, purified and characterized by HPLC and mass spectrometry. Then, the staphylococci susceptibility tests were performed and their cytotoxicity was established. The results of Cystapep 1 and its analogues interactions with model target were examined using the DSC and ITC techniques. At the end the spatial structures of the tested peptidomimetics using NMR technique were obtained. RESULTS: Antimicrobial and cytotoxicity tests show that Cystapep 1 and its peptidomimetic V are good drug candidates. DSC and ITC studies indicate that disruption of membrane is not the only possible mechanism of action of Cystapep 1-like compounds. For Cystapep 1 itself, a multi-step mechanism of interaction with a negatively charged membrane is observed, which indicates other processes occurring alongside the binding process. The conformational analysis indicated the presence of a hydrophobic cluster, composed of certain side chains, only in the structures of active peptidomimetics. This can facilitate the anchoring of the peptidyl derivatives to the bacterial membrane. CONCLUSION: An increase in hydrophobicity of the peptidomimetics improved the antimicrobial activity against S. aureus, however there is no simple correlation between the biological activity and the strength of interactions of the peptidyl with bacterial membrane.


Subject(s)
Anti-Bacterial Agents/chemistry , Cystatin C/chemistry , Cysteine Proteinase Inhibitors/chemistry , Dipeptides/chemistry , Peptidomimetics/chemistry , Animals , Anti-Bacterial Agents/pharmacology , Binding Sites , Cell Line , Cell Survival/drug effects , Cysteine Proteinase Inhibitors/pharmacology , Dipeptides/pharmacology , Humans , Hydrophobic and Hydrophilic Interactions , Mice , Models, Molecular , Peptidomimetics/pharmacology , Protein Conformation , Staphylococcus aureus/drug effects , Structure-Activity Relationship
7.
Molecules ; 23(2)2018 Feb 14.
Article in English | MEDLINE | ID: mdl-29443886

ABSTRACT

During recent decades, the market for peptide-based drugs, including antimicrobial peptides, has vastly extended and evolved. These drugs can be useful in treatment of various types of disorders, e.g., cancer, autoimmune diseases, infections, and non-healing wounds. Although peptides are less immunogenic than other biologic therapeutics, they can still induce immune responses and cause allergies. It is important to evaluate the immunogenic and allergic potential of peptides before they are forwarded to the expensive stages of clinical trials. The process of the evaluation of immunogenicity and cytotoxicity is complicated, as in vitro models and bioinformatics tools cannot fully simulate situations in the clinic. Nevertheless, several potentially promising tests for the preclinical evaluation of peptide drugs have been implemented (e.g., cytotoxicity assays, the basophil activation test, and lymphocyte activation assays). In this review, we focus on strategies for evaluation of the allergic potential of peptide-based therapeutics.


Subject(s)
Allergens/therapeutic use , Anti-Bacterial Agents/therapeutic use , Hypersensitivity/immunology , Peptides/therapeutic use , Allergens/chemistry , Allergens/immunology , Anti-Bacterial Agents/adverse effects , Anti-Bacterial Agents/immunology , Basophils/drug effects , Basophils/immunology , Dermatology , Humans , Hypersensitivity/etiology , Immunity, Cellular/drug effects , Lymphocyte Activation/drug effects , Peptides/adverse effects , Peptides/immunology
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