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1.
PLoS One ; 15(5): e0232761, 2020.
Article in English | MEDLINE | ID: mdl-32407327

ABSTRACT

OBJECTIVE: Cash transfers are a common intervention to incentivize salutary behavior in resource-constrained settings. Many cash transfer studies do not, however, account for the effect of the size of the cash transfer in design or analysis. A randomized, controlled trial of a cash-transfer intervention is planned to incentivize appropriate surgical utilization in Guinea. The aim of the current study is to determine the size of that cash transfer so as to maximize compliance while minimizing cost. METHODS: Data were collected from nine coastal Guinean hospitals on their surgical capabilities and the cost of receiving surgery. These data were combined with publicly available data about the general Guinean population to create an agent-based model predicting surgical utilization. The model was validated to the available literature on surgical utilization. Cash transfer sizes from 0 to 1,000,000 Guinean francs were evaluated, with surgical compliance as the primary outcome. RESULTS: Compliance with scheduled surgery increases as the size of a cash transfer increases. This increase is asymptotic, with a leveling in utilization occurring when the cash transfer pays for all the costs associated with surgical care. Below that cash transfer size, no other optima are found. Once a cash transfer completely covers the costs of surgery, other barriers to care such as distance and hospital quality dominate. CONCLUSION: Cash transfers to incentivize health-promoting behavior appear to be dose-dependent. Maximal impact is likely only to occur when full patient costs are eliminated. These findings should be incorporated in the design of future cash transfer studies.


Subject(s)
Health Care Costs , Health Resources/economics , Surgical Procedures, Operative/economics , Adolescent , Adult , Child , Child, Preschool , Female , Hospitals , Humans , Male , Middle Aged , Systems Analysis , Young Adult
2.
Nat Commun ; 11(1): 2619, 2020 05 26.
Article in English | MEDLINE | ID: mdl-32457326

ABSTRACT

DIS3L2-mediated decay (DMD) is a surveillance pathway for certain non-coding RNAs (ncRNAs) including ribosomal RNAs (rRNAs), transfer RNAs (tRNAs), small nuclear RNAs (snRNAs), and RMRP. While mutations in DIS3L2 are associated with Perlman syndrome, the biological significance of impaired DMD is obscure and pathological RNAs have not been identified. Here, by ribosome profiling (Ribo-seq) we find specific dysregulation of endoplasmic reticulum (ER)-targeted mRNA translation in DIS3L2-deficient cells. Mechanistically, DMD functions in the quality control of the 7SL ncRNA component of the signal recognition particle (SRP) required for ER-targeted translation. Upon DIS3L2 loss, sustained 3'-end uridylation of aberrant 7SL RNA impacts ER-targeted translation and causes ER calcium leakage. Consequently, elevated intracellular calcium in DIS3L2-deficient cells activates calcium signaling response genes and perturbs ESC differentiation. Thus, DMD is required to safeguard ER-targeted mRNA translation, intracellular calcium homeostasis, and stem cell differentiation.


Subject(s)
Calcium/metabolism , Endoplasmic Reticulum/metabolism , Exoribonucleases/metabolism , Fetal Macrosomia/microbiology , RNA, Messenger/metabolism , Wilms Tumor/microbiology , Animals , Calcium Signaling/genetics , Cell Differentiation , Embryonic Stem Cells , Exoribonucleases/deficiency , Exoribonucleases/genetics , Fetal Macrosomia/enzymology , Fetal Macrosomia/genetics , Gene Expression Regulation , Humans , Insulin/metabolism , Mice , Protein Biosynthesis , RNA, Small Cytoplasmic/metabolism , Signal Recognition Particle/metabolism , Uridine Monophosphate/metabolism , Wilms Tumor/enzymology , Wilms Tumor/genetics
3.
Mol Metab ; 35: 100959, 2020 05.
Article in English | MEDLINE | ID: mdl-32244186

ABSTRACT

OBJECTIVE: As diabetes develops, marked reductions of insulin secretion are associated with very modest elevations of glucose. We wondered if these glucose changes disrupt beta cell differentiation enough to account for the altered function. METHODS: Rats were subjected to 90% partial pancreatectomies and those with only mild glucose elevations 4 weeks or 10 weeks after surgery had major alterations of gene expression in their islets as determined by RNAseq. RESULTS: Changes associated with glucose toxicity demonstrated that many of the critical genes responsible for insulin secretion were downregulated while the expression of normally suppressed genes increased. Also, there were marked changes in genes associated with replication, aging, senescence, stress, inflammation, and increased expression of genes controlling both class I and II MHC antigens. CONCLUSIONS: These findings suggest that mild glucose elevations in the early stages of diabetes lead to phenotypic changes that adversely affect beta cell function, growth, and vulnerability.


Subject(s)
Blood Glucose/metabolism , Diabetes Mellitus, Experimental/metabolism , Diabetes Mellitus, Type 2/metabolism , Hyperglycemia/metabolism , Insulin-Secreting Cells/metabolism , Animals , Cell Differentiation , Diabetes Mellitus, Experimental/etiology , Diabetes Mellitus, Type 2/etiology , Disease Models, Animal , Down-Regulation , Gene Expression , Hyperglycemia/etiology , Insulin/metabolism , Insulin Secretion/genetics , Islets of Langerhans Transplantation/adverse effects , Islets of Langerhans Transplantation/methods , Male , Pancreatectomy/adverse effects , Pancreatectomy/methods , RNA, Messenger/genetics , Rats , Rats, Inbred Lew
4.
Nat Struct Mol Biol ; 26(6): 490-500, 2019 06.
Article in English | MEDLINE | ID: mdl-31160785

ABSTRACT

Ribosomal RNA (rRNA) biogenesis is a multistep process requiring several nuclear and cytoplasmic exonucleases. The exact processing steps for mammalian 5.8S rRNA remain obscure. Here, using loss-of-function approaches in mouse embryonic stem cells (mESCs) and deep sequencing of rRNA intermediates, we investigate the requirements of exonucleases known to be involved in 5.8S maturation at nucleotide resolution and explore the role of the Perlman syndrome-associated 3'-5' exonuclease Dis3l2 in rRNA processing. We uncover a novel cytoplasmic intermediate that we name '7SB' rRNA that is generated through sequential processing by distinct exosome complexes. 7SB rRNA can be oligoadenylated by an unknown enzyme and/or oligouridylated by TUT4/7 and subsequently processed by Dis3l2 and Eri1. Moreover, exosome depletion triggers Dis3l2-mediated decay (DMD) as a surveillance pathway for rRNAs. Our data identify previously unknown 5.8S rRNA processing steps and provide nucleotide-level insight into the exonuclease requirements for mammalian rRNA processing.


Subject(s)
Exoribonucleases/metabolism , RNA, Ribosomal, 5.8S/metabolism , Animals , Cell Line , DNA-Binding Proteins/metabolism , Fetal Macrosomia/metabolism , Mice , Mouse Embryonic Stem Cells/metabolism , RNA Transport , Ribosomes/metabolism , Uridine/metabolism , Wilms Tumor/metabolism
5.
Methods ; 155: 10-19, 2019 02 15.
Article in English | MEDLINE | ID: mdl-30395968

ABSTRACT

Post-transcriptional modification of RNA, the so-called 'Epitranscriptome', can regulate RNA structure, stability, localization, and function. Numerous modifications have been identified in virtually all classes of RNAs, including messenger RNAs (mRNAs), transfer RNAs (tRNAs), ribosomal RNAs (rRNAs), microRNAs (miRNAs), and other noncoding RNAs (ncRNAs). These modifications may occur internally (by base or sugar modifications) and include RNA methylation at different nucleotide positions, or by the addition of various nucleotides at the 3'-end of certain transcripts by a family of terminal nucleotidylyl transferases. Developing methods to specifically and accurately detect and map these modifications is essential for understanding the molecular function(s) of individual RNA modifications and also for identifying and characterizing the proteins that may read, write, or erase them. Here, we focus on the characterization of RNA species targeted by 3' terminal uridylyl transferases (TUTases) (TUT4/7, also known as Zcchc11/6) and a 3'-5' exoribonuclease, Dis3l2, in the recently identified Dis3l2-mediated decay (DMD) pathway - a dedicated quality control pathway for a subset of ncRNAs. We describe the detailed methods used to precisely identify 3'-end modifications at nucleotide level resolution with a particular focus on the U1 and U2 small nuclear RNA (snRNA) components of the Spliceosome. These tools can be applied to investigate any RNA of interest and should facilitate studies aimed at elucidating the functional relevance of 3'-end modifications.


Subject(s)
Computational Biology/methods , RNA Processing, Post-Transcriptional , RNA, Messenger/genetics , RNA, Small Nuclear/genetics , Uridine/metabolism , 3' Flanking Region , Animals , CRISPR-Associated Protein 9/genetics , CRISPR-Associated Protein 9/metabolism , CRISPR-Cas Systems , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Exoribonucleases/deficiency , Exoribonucleases/genetics , Gene Editing/methods , Mice , Mouse Embryonic Stem Cells , Nucleotidyltransferases/genetics , Nucleotidyltransferases/metabolism , RNA Stability , RNA, Guide, Kinetoplastida/genetics , RNA, Guide, Kinetoplastida/metabolism , RNA, Messenger/metabolism , RNA, Small Nuclear/metabolism , Spliceosomes/genetics , Spliceosomes/metabolism
6.
Cell Metab ; 25(4): 898-910.e5, 2017 Apr 04.
Article in English | MEDLINE | ID: mdl-28380379

ABSTRACT

We hypothesized that the known heterogeneity of pancreatic ß cells was due to subpopulations of ß cells at different stages of their life cycle with different functional capacities and that further changes occur with metabolic stress and aging. We identified new markers of aging in ß cells, including IGF1R. In ß cells IGF1R expression correlated with age, dysfunction, and expression of known age markers p16ink4a, p53BP1, and senescence-associated ß-galactosidase. The new markers showed striking heterogeneity both within and between islets in both mouse and human pancreas. Acute induction of insulin resistance with an insulin receptor antagonist or chronic ER stress resulted in increased expression of aging markers, providing insight into how metabolic stress might accelerate dysfunction and decline of ß cells. These novel findings about ß cell and islet heterogeneity, and how they change with age, open up an entirely new set of questions about the pathogenesis of type 2 diabetes.


Subject(s)
Biomarkers/metabolism , Cellular Senescence , Insulin Resistance , Insulin-Secreting Cells/metabolism , Insulin-Secreting Cells/pathology , Adolescent , Adult , Aged , Aging/metabolism , Animals , Diabetes Mellitus, Type 2/metabolism , Diabetes Mellitus, Type 2/pathology , Female , Flow Cytometry , Gene Expression Regulation, Developmental , Glucose/metabolism , Green Fluorescent Proteins/metabolism , Hemolytic Plaque Technique , Humans , Insulin/metabolism , Male , Mice, Inbred C57BL , Middle Aged , RNA, Messenger/genetics , RNA, Messenger/metabolism , Receptor, IGF Type 1/metabolism , Stress, Physiological , Tumor Suppressor p53-Binding Protein 1/metabolism , Young Adult
7.
Islets ; 9(2): 19-29, 2017 03 04.
Article in English | MEDLINE | ID: mdl-28252345

ABSTRACT

Isolated islets used for transplantation are known to be stressed, which can result from the circumstances of death, in particular brain death, the preservation of the pancreas with its warm and cold ischemia, from the trauma of the isolation process, and the complex events that occur during tissue culture. The current study focused upon the events that occur before the islet isolation procedure. Pancreases were obtained from brain dead donors (n = 7) with mean age 50 (11) and normal pancreatic tissue obtained at surgery done for pancreatic neoplasms (n = 7), mean age 69 (9). Frozen sections were subjected to laser capture microdissection (LCM) to obtain ß-cell rich islet tissue, from which extracted RNA was analyzed with microarrays. Gene expression of the 2 groups was evaluated with differential expression analysis for genes and pathways. Marked changes were found in pathways concerned with endoplasmic reticulum stress with its unfolded protein response (UPR), apoptotic pathways and components of inflammation. In addition, there were changes in genes important for islet cell identity. These findings advance our understanding of why islets are stressed before transplantation, which may lead to strategies to reduce this stress and lead to better clinical outcomes.


Subject(s)
Apoptosis/genetics , Insulin-Secreting Cells/metabolism , Pancreas/metabolism , Stress, Physiological/genetics , Unfolded Protein Response/genetics , Adult , Aged , Aged, 80 and over , Brain Death , Female , Gene Expression Profiling , Humans , Inflammation/genetics , Laser Capture Microdissection , Male , Middle Aged
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