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1.
Biol Chem ; 382(11): 1541-9, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11767943

ABSTRACT

A dual-affinity method was established to purify, for the first time, a microsomal ecdysone-binding cytochrome P450 protein from locust Malpighian tubules. This method involved, after prepurification on omega-octylamino-agarose and hydroxylapatite, binding of cytochrome P450 to an immobilized triazole-based general P450 inhibitor (type-II ligand) followed by elution with the substrate ecdysone (type-I ligand) of the bound cytochrome. The isolated material showed a typical cytochrome P450 spectrum, a specific heme content of 13 nmol/mg protein, and a prominent protein of about 60 kDa on SDS-PAGE. Based on a tryptic undecapeptide sequence the isolated protein may be identical to CYP6H1, a putative ecdysone 20-monooxygenase recently cloned from the same tissue. Ecdysone 20-monooxygenase activity could be partially reconstituted from microsomal detergent extracts, when supplemented with purified bovine cytochrome P450 reductase and detergent-extracted microsomes; reconstitution was not successful with any chromatographic fraction, however. Therefore, purification of the locust cytochrome P450 was monitored by ecdysone-induced type-I difference spectra, whenever applicable, in addition to carbon monoxide spectra. Affinity columns with matrix-bound diethylstilbestrol and testosterone 3-thiosemicarbazone, but not with the 17beta-hemisuccinate, yielded elution profiles with ecdysone that were comparable to those of the triazole matrix. The concept of dual-affinity chromatography described here may be generally applicable to the isolation of cytochromes P450.


Subject(s)
Aryl Hydrocarbon Hydroxylases , Cytochrome P-450 Enzyme System/isolation & purification , Ecdysone/metabolism , Grasshoppers/metabolism , Microsomes/enzymology , Aging/metabolism , Animals , Chromatography, Ion Exchange , Cytochrome P-450 Enzyme System/metabolism , Durapatite , Indicators and Reagents , Ligands , Malpighian Tubules/enzymology , NADPH-Ferrihemoprotein Reductase/metabolism , Sepharose , Solvents , Steroid Hydroxylases/metabolism , Triazoles/chemistry
2.
Blood ; 96(13): 4236-45, 2000 Dec 15.
Article in English | MEDLINE | ID: mdl-11110697

ABSTRACT

A 38-kd protein that associates with F-actin structures in activated platelets and endothelial cells was purified, cloned, and characterized. The protein contains an N-terminal PDZ motif, a large intervening sequence, and a C-terminal LIM domain and was identified as the human homolog of rat CLP36. The study showed that CLP36 associates with actin filaments and stress fibers that are formed during shape change and spreading of platelets and during migration and contraction of endothelial cells. CLP36 binds to alpha-actinin-1 as shown by coimmunoprecipitation, pull-down experiments, yeast 2-hybrid analysis, and blot overlay assays and colocalizes with alpha-actinin-1 along endothelial actin stress fibers. In contrast to alpha-actinin-1, CLP36 was absent from focal adhesions in both activated platelets and endothelial cells. The N-terminal part of CLP36 containing the PDZ domain and the intervening region, but not the LIM domain, targeted enhanced green fluorescent protein fusion proteins to stress fibers in endothelial cells. Yeast 2-hybrid analysis demonstrated that the intervening sequence, but not the PDZ or the LIM domain of CLP36, binds to the spectrinlike repeats 2 and 3 of alpha-actinin-1. The study further shows that CLP36 binds to alpha-actinin in resting platelets and translocates as a CLP36/alpha-actinin complex to the newly formed actin cytoskeleton in activated platelets. The results indicate that CLP36 binds via alpha-actinin-1 to actin filaments and stress fibers in activated human platelets and endothelial cells. The study suggests that CLP36 may direct alpha-actinin-1 to specific actin structures and at this position might modulate the function of alpha-actinin-1. (Blood. 2000;96:4236-4245)


Subject(s)
Actin Cytoskeleton/metabolism , Actins/metabolism , Blood Platelets/metabolism , Endothelium, Vascular/metabolism , Homeodomain Proteins/metabolism , Platelet Activation , Adenocarcinoma/genetics , Amino Acid Sequence , Animals , Base Sequence , Cells, Cultured , Cloning, Molecular , Cytoskeleton/physiology , Cytoskeleton/ultrastructure , DNA, Complementary/genetics , Endothelium, Vascular/cytology , Genes , Homeodomain Proteins/chemistry , Humans , LIM Domain Proteins , Leukemia, Erythroblastic, Acute/pathology , Microscopy, Fluorescence , Molecular Sequence Data , Neoplasm Proteins/chemistry , Neoplasm Proteins/genetics , Protein Structure, Tertiary , Rats , Recombinant Fusion Proteins/metabolism , Structure-Activity Relationship , Tumor Cells, Cultured , Two-Hybrid System Techniques , Umbilical Arteries , Umbilical Veins
3.
Electrophoresis ; 21(11): 2209-18, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10892731

ABSTRACT

The human plasma protein patterns obtained by two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) is a good model system for post-translational modifications because of the existence of several "ladders" of protein spots [Anderson, N. L., Anderson, N. G., Electrophoresis 1991, 12, 883-906], so-called "trains" of spots. Our investigation of several proteins, amongst others beta2-microglobulin and the haptoglobin chains, found the differences in isoelectric points (p/) to be due to deamidation of asparagines. After enzymatic cleavage with endopeptidases in the 2-D polyacrylamide gel, the asparagine and deamidated asparagine containing peptides were separated and quantified by reversed-phase HPLC. In order to separate these peptides, a neutral pH system was established and, as a result, the differences in hydrophobicity of asparagine-containing and deamidated asparagine-containing peptides increased. But how do deamidated asparagines contribute to the observed spot pattern? One spot in the 2-D gel consists of a mixture of protein species with the same number of deamidated asparagines but on different sequence position sites. The difference between the spots in the "ladder" is a growing number of negative charges introduced in the protein by an increasing number of deamidated asparagines. As a consequence, the mass difference between two spots is exactly 1 Da, which is shown in this paper for intact protein masses and the corresponding deamidated peptides.


Subject(s)
Amides/metabolism , Blood Proteins/metabolism , Amino Acid Sequence , Blood Proteins/chemistry , Chromatography, High Pressure Liquid , Electrophoresis, Gel, Two-Dimensional , Humans , Mass Spectrometry , Molecular Sequence Data , Molecular Weight , Peptide Mapping
4.
Biochim Biophys Acta ; 1477(1-2): 64-74, 2000 Mar 07.
Article in English | MEDLINE | ID: mdl-10708849

ABSTRACT

A serine proteinase inhibitor isolated from Leucaena leucocephala seeds (LlTI) was purified to homogeneity by acetone fractionation, ion exchange chromatography, gel filtration and reverse phase chromatography (HPLC). SDS-PAGE indicated a protein with M(r) 20000 and two polypeptide chains (alpha-chain, M(r) 15000, and beta-chain, M(r) 5000), the sequence being determined by automatic Edman degradation and by mass spectroscopy. LlTI is a 174 amino acid residue protein which shows high homology to plant Kunitz inhibitors, especially those double chain proteins purified from the Mimosoideae subfamily. LlTI inhibits plasmin (K(i) 3.2 x 10(-10) M), human plasma kallikrein (K(i) 6.3 x 10(-9) M), trypsin (K(i) 2.5 x 10(-8) M) and chymotrypsin (K(i) 1.4 x 10(-8) M). Factor XIIa activity is inhibited but K(i) was not determined, and factor Xa, tissue kallikrein and thrombin are not inhibited by LlTI. The action of LlTI on enzymes that participate in the blood clotting extrinsic pathway is confirmed by the prolongation of activated partial thromboplastin time, used as clotting time assay. The inhibition of the fibrinolytic activity of plasmin was confirmed on the hydrolysis of fibrin plates. LlTI inhibits kinin release from high molecular weight kininogen by human plasma kallikrein in vitro and, administered intravenously, causes a decrease in paw edema induced by carrageenin or heat in male Wistar rats. In addition, lower concentrations of bradykinin were found in limb perfusion fluids of LlTI-treated rats.


Subject(s)
Blood Coagulation/drug effects , Bradykinin/metabolism , Plant Proteins/chemistry , Serine Proteinase Inhibitors/chemistry , Amino Acid Sequence , Animals , Anti-Inflammatory Agents, Non-Steroidal/pharmacology , Edema/drug therapy , Edema/etiology , Fibrinolysis/drug effects , Kallikreins/antagonists & inhibitors , Male , Molecular Sequence Data , Partial Thromboplastin Time , Plant Proteins/isolation & purification , Plant Proteins/pharmacology , Rats , Rats, Wistar , Seeds , Serine Proteinase Inhibitors/pharmacology
5.
Plant Mol Biol ; 44(6): 733-45, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11202436

ABSTRACT

Formation of pinosylvin (PS) and pinosylvin 3-O-monomethyl ether (PSM), as well as the activities of stilbene synthase (STS) and S-adenosyl-1-methionine (SAM):pinosylvin O-methyltransferase (PMT), were induced strongly in needles of Scots pine seedlings upon ozone treatment, as well as in cell suspension cultures of Scots pine upon fungal elicitation. A SAM-dependent PMT protein was purified and partially characterised. A cDNA encoding PMT was isolated from an ozone-induced Scots pine cDNA library. Southern blot analysis of the genomic DNA suggested the presence of a gene family. The deduced protein sequence showed the typical highly conserved regions of O-methyltransferases (OMTs), and average identities of 20-56% to known OMTs. PMT expressed in Escherichia coli corresponded to that of purified PMT (40 kDa) from pine cell cultures. The recombinant enzyme catalysed the methylation of PS, caffeic acid, caffeoyl-CoA and quercetin. Several other substances, such as astringenin, resveratrol, 5-OH-ferulic acid, catechol and luteolin, were also methylated. Recombinant PMT thus had a relatively broad substrate specificity. Treatment of 7-year old Scots pine trees with ozone markedly increased the PMT mRNA level. Our results show that PMT represents a new SAM-dependent OMT for the methylation of stress-induced pinosylvin in Scots pine needles.


Subject(s)
Cycadopsida/genetics , Methyltransferases/metabolism , Protein O-Methyltransferase/genetics , Amino Acid Sequence , Cloning, Molecular , Cycadopsida/cytology , Cycadopsida/enzymology , DNA, Complementary/chemistry , DNA, Complementary/genetics , DNA, Complementary/isolation & purification , DNA, Plant/genetics , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Kinetics , Molecular Sequence Data , Ozone/pharmacology , Pinus sylvestris , Plant Proteins , Plants/drug effects , Plants/metabolism , Protein O-Methyltransferase/chemistry , Protein O-Methyltransferase/metabolism , RNA, Messenger/drug effects , RNA, Messenger/genetics , RNA, Messenger/metabolism , Sequence Analysis, DNA , Sequence Analysis, Protein , Stilbenes/metabolism
6.
Planta ; 209(4): 478-86, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10550629

ABSTRACT

Delta(5)-3beta-Etaydroxysteroid dehydrogenase (Delta(5)-3beta-HSD; EC 1.1.1.145), an enzyme converting pregn-5-ene-3beta-ol-20-one (pregnenolone) to pregn-5-ene-3,20-dione (isoprogesterone), was isolated from the soluble fraction of suspension-cultured cells of Digitalis lanata L. strain VIII. Starting with acetone dry powder the enzyme was purified in three steps using column chromatography on Fractogel-TSK DEAE, hydroxyapatite and Sephacryl G-200. Fractions with highest Delta(5)-3beta-HSD activity were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. After in-situ digestion the resulting bands were sequenced N-terminally. The 29-kDa band yielded three fragments with high sequence homology to members of the superfamily of short-chain dehydrogenases/reductases. High similarity was found to microbial hydroxysteroid dehydrogenases. The band may therefore represent the Delta(5)-3beta-HSD. The purified enzyme was characterized with respect to kinetic parameters, substrate specificity and localization. The function of the enzyme in steroid metabolism is discussed.


Subject(s)
3-Hydroxysteroid Dehydrogenases/chemistry , Digitalis/enzymology , Plants, Medicinal , Plants, Toxic , 3-Hydroxysteroid Dehydrogenases/isolation & purification , Amino Acid Sequence , Kinetics , Models, Chemical , Molecular Sequence Data , Pregnenolone/metabolism , Progesterone/metabolism , Sequence Homology, Amino Acid , Steroid Isomerases/chemistry , Steroids/metabolism , Substrate Specificity
7.
Anal Biochem ; 274(2): 270-7, 1999 Oct 15.
Article in English | MEDLINE | ID: mdl-10527525

ABSTRACT

A method for purification of the peroxisomal membrane from rat liver is described. The procedure consists of floating the (contaminated) peroxisomal membranes through an alkaline sucrose density gradient. A good resolution between the peroxisomal membrane and other membrane systems is achieved. Using these floated peroxisomal membranes we have determined that only 7.8 +/- 0.9% of the total peroxisomal protein is alkali resistant. The polypeptide composition of these highly pure peroxisomal membranes was analyzed by SDS-PAGE. Bands corresponding to polypeptides with apparent molecular masses of 15, 18, 22, 24, 26, 29, 35, 36, 38, 40, 52, 55, 70, 74-77, and 88 kDa are detected upon Coomassie blue staining of polyacrylamide gels. The identity of several of these polypeptides was determined by N-terminal sequencing and Western blotting analysis.


Subject(s)
Centrifugation, Density Gradient/methods , Intracellular Membranes/chemistry , Peptides/chemistry , Peroxisomes/chemistry , Amino Acid Sequence , Animals , Cell Fractionation/methods , Electrophoresis, Polyacrylamide Gel , Male , Molecular Sequence Data , Rats , Rats, Wistar
8.
FEBS Lett ; 456(1): 68-72, 1999 Jul 30.
Article in English | MEDLINE | ID: mdl-10452532

ABSTRACT

The molecular cloning of the first subunit C of the plant vacuolar H+-ATPase is reported. Tonoplast vesicles were purified from barley leaves by sucrose gradient centrifugation, and the tonoplast polypeptides were separated by two-dimensional (2-D) gel electrophoresis. Using an anti-ATPase holoenzyme antibody, a polypeptide was recognized in the molecular mass range of 40 kDa with an isoelectric point of about 6.0, and tentatively identified as subunit C. The polypeptide spot was excised from about 50 2-D gels and subjected to endo Lys C proteolysis. Two proteolytic peptides were sequenced and the amino acid sequences were used to design degenerated oligonucleotides, followed by PCR amplification with cDNA template and screening of a cDNA library synthesized from Hordeum vulgare poly A mRNA of epidermis strips. The full length clone of 1.5 kbp contains an open reading frame of 1062 bp encoding a polypeptide of 354 amino acids with a molecular mass of 39,982 Da and an isoelectric point of 6.04. Amino acid identity with sequences of SUC from animals and fungi is in the range of 36.7 to 38.5%. Expression of the cloned gene was demonstrated by Northern blotting and RT-PCR.


Subject(s)
Hordeum/enzymology , Proton-Translocating ATPases/genetics , Proton-Translocating ATPases/metabolism , Vacuolar Proton-Translocating ATPases , Amino Acid Sequence , Base Sequence , Cloning, Molecular , Gene Expression Regulation, Plant , Molecular Sequence Data , Plant Leaves/enzymology , Plant Roots/enzymology , Sequence Homology, Amino Acid , Structure-Activity Relationship
9.
Biochim Biophys Acta ; 1445(3): 337-41, 1999 Jun 09.
Article in English | MEDLINE | ID: mdl-10366717

ABSTRACT

A 24 kDa protein from rat liver peroxisomal membrane was isolated and subjected to Edman degradation. Using the N-terminal sequence of this polypeptide we have identified several rat and human expressed sequence tags in the GenBank Database. The complete sequence of a human cDNA clone was determined. The open reading frame encodes an extremely basic protein 212 amino acid residues long. A high similarity between this mammalian protein and hypothetical proteins from Caenorhabditis elegans and Neurospora crassa was found. Hydropathy analysis reveals the existence of two putative membrane-spanning domains in conserved regions of the three homologous proteins.


Subject(s)
Membrane Proteins/chemistry , Microbodies/metabolism , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , Expressed Sequence Tags , Humans , Liver/metabolism , Membrane Proteins/genetics , Membrane Proteins/isolation & purification , Molecular Sequence Data , Rats , Sequence Alignment
10.
Eur J Biochem ; 260(1): 38-49, 1999 Feb.
Article in English | MEDLINE | ID: mdl-10091582

ABSTRACT

The substrate-specific selenoprotein B of glycine reductase (PBglycine) from Eubacterium acidaminophilum was purified and characterized. The enzyme consisted of three different subunits with molecular masses of about 22 (alpha), 25 (beta) and 47 kDa (gamma), probably in an alpha 2 beta 2 gamma 2 composition. PBglycine purified from cells grown in the presence of [75Se]selenite was labeled in the 47-kDa subunit. The 22-kDa and 47-kDa subunits both reacted with fluorescein thiosemicarbazide, indicating the presence of a carbonyl compound. This carbonyl residue prevented N-terminal sequencing of the 22-kDa (alpha) subunit, but it could be removed for Edman degradation by incubation with o-phenylenediamine. A DNA fragment was isolated and sequenced which encoded beta and alpha subunits of PBglycine (grdE), followed by a gene encoding selenoprotein A (grdA2) and the gamma subunit of PBglycine (grdB2). The cloned DNA fragment represented a second GrdB-encoding gene slightly different from a previously identified partial grdBl-containing fragment. Both grdB genes contained an in-frame UGA codon which confirmed the observed selenium content of the 47-kDa (gamma) subunit. Peptide sequence analyses suggest that grdE encodes a proprotein which is cleaved into the previously sequenced N-terminal 25-kDa (beta) subunit and a 22-kDa (alpha) subunit of PBglycine. Cleavage most probably occurred at an -Asn-Cys- site concomitantly with the generation of the blocking carbonyl moiety from cysteine at the alpha subunit.


Subject(s)
Amino Acid Oxidoreductases/genetics , Bacterial Proteins/genetics , Eubacterium/enzymology , Multienzyme Complexes/genetics , Proteins/genetics , Amino Acid Oxidoreductases/chemistry , Amino Acid Sequence , Base Sequence , Cell Division/drug effects , Cloning, Molecular , Genes, Bacterial/genetics , Models, Biological , Molecular Sequence Data , Multienzyme Complexes/chemistry , Proteins/chemistry , Selenium Radioisotopes/metabolism , Selenoproteins , Sequence Alignment , Sequence Analysis, DNA , Substrate Specificity
11.
Nature ; 402(6758): 147-54, 1999 Nov 11.
Article in English | MEDLINE | ID: mdl-10647006

ABSTRACT

The chaperonin GroEL has an essential role in mediating protein folding in the cytosol of Escherichia coli. Here we show that GroEL interacts strongly with a well-defined set of approximately 300 newly translated polypeptides, including essential components of the transcription/translation machinery and metabolic enzymes. About one third of these proteins are structurally unstable and repeatedly return to GroEL for conformational maintenance. GroEL substrates consist preferentially of two or more domains with alphabeta-folds, which contain alpha-helices and buried beta-sheets with extensive hydrophobic surfaces. These proteins are expected to fold slowly and be prone to aggregation. The hydrophobic binding regions of GroEL may be well adapted to interact with the non-native states of alphabeta-domain proteins.


Subject(s)
Chaperonin 60/metabolism , Escherichia coli/metabolism , Protein Structure, Secondary , Substrate Specificity
12.
Anal Biochem ; 265(1): 123-8, 1998 Dec 01.
Article in English | MEDLINE | ID: mdl-9866716

ABSTRACT

We have developed a protocol for the sequential release of the intermembrane space (IMS) content of Saccharomyces cerevisiae mitochondria. Two distinct fractions were obtained: a soluble IMS with cytochrome b2 as key marker and a salt-extractable IMS with cytochrome c as key marker. The identity of several proteins was determined by amino-terminal amino acid sequencing. The IMS fractions were devoid of contaminations from cytosol and mitochondrial outer and inner membranes. By subtraction analysis, the protein profiles of soluble and salt-extractable IMS fractions were depleted of contaminating bands derived from matrix proteins. The fractionation method will provide the basis for the further analysis of IMS proteins and characterization of their functions in bioenergetics, mitochondrial biogenesis, and regulatory processes.


Subject(s)
Fungal Proteins/isolation & purification , Intracellular Membranes/ultrastructure , Mitochondria/metabolism , Saccharomyces cerevisiae/ultrastructure , Cell Fractionation , Fungal Proteins/metabolism , Ultracentrifugation
13.
J Biol Chem ; 273(48): 31971-6, 1998 Nov 27.
Article in English | MEDLINE | ID: mdl-9822668

ABSTRACT

Peptidyl-prolyl cis-trans-isomerases (PPIases) are enzymes capable of isomerizing a Xaa-Pro peptide bond. Three families of PPIases are known: cyclophilins, FKBPs, and parvulins. The physiological functions of the PPIases are only poorly understood. Eucaryotic members of the parvulin family have recently been shown to be essential for regulation of mitosis. Here we describe the purification and characterization of Ssp1, an abundant parvulin homolog from Neurospora crassa, which is unique among the known eucaryotic parvulins in containing a polyglutamine stretch between the N-terminal WW domain and the C-terminal PPIase domain. Ssp1 is a site-specific PPIase with respect to the amino acid N-terminal to the proline residue. Peptides with glutamate, phosphoserine, or phosphothreonine in the -1-position proved to be the best substrates. Ssp1 is not only able to isomerize small peptides but is also active in protein folding, as shown with mouse dihydrofolate reductase. Using the substrate specificity of Ssp1, we could identify Glu81-Pro82 as a PPIase-sensitive site in folding of dihydrofolate reductase. These results demonstrate that Ssp1 is a potent mediator of protein folding and that parvulins can serve as tools to elucidate rate-limiting steps in protein folding reactions.


Subject(s)
Neurospora crassa/enzymology , Peptidylprolyl Isomerase/chemistry , Peptidylprolyl Isomerase/metabolism , Protein Folding , Tetrahydrofolate Dehydrogenase/genetics , Amino Acid Sequence , Animals , Base Sequence , Cloning, Molecular , DNA Primers , Gene Library , Humans , Kinetics , Mice , Molecular Sequence Data , NIMA-Interacting Peptidylprolyl Isomerase , Neurospora crassa/genetics , Peptidylprolyl Isomerase/isolation & purification , Polymerase Chain Reaction , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Tetrahydrofolate Dehydrogenase/chemistry
14.
J Bacteriol ; 180(22): 5997-6004, 1998 Nov.
Article in English | MEDLINE | ID: mdl-9811660

ABSTRACT

Cyclic 2,3-diphosphoglycerate synthetase (cDPGS) catalyzes the synthesis of cyclic 2,3-diphosphoglycerate (cDPG) by formation of an intramolecular phosphoanhydride bond in 2,3-diphosphoglycerate. cDPG is known to be accumulated to high intracellular concentrations (>300 mM) as a putative thermoadapter in some hyperthermophilic methanogens. For the first time, we have purified active cDPGS from a methanogen, the hyperthermophilic archaeon Methanothermus fervidus, sequenced the coding gene, and expressed it in Escherichia coli. cDPGS purification resulted in enzyme preparations containing two isoforms differing in their electrophoretic mobility under denaturing conditions. Since both polypeptides showed the same N-terminal amino acid sequence and Southern analyses indicate the presence of only one gene coding for cDPGS in M. fervidus, the two polypeptides originate from the same gene but differ by a not yet identified modification. The native cDPGS represents a dimer with an apparent molecular mass of 112 kDa and catalyzes the reversible formation of the intramolecular phosphoanhydride bond at the expense of ATP. The enzyme shows a clear preference for the synthetic reaction: the substrate affinity and the Vmax of the synthetic reaction are a factor of 8 to 10 higher than the corresponding values for the reverse reaction. Comparison with the kinetic properties of the electrophoretically homogeneous, apparently unmodified recombinant enzyme from E. coli revealed a twofold-higher Vmax of the enzyme from M. fervidus in the synthesizing direction.


Subject(s)
2,3-Diphosphoglycerate/metabolism , Archaeal Proteins , Genes, Archaeal , Methanobacteriales/enzymology , Phosphorus-Oxygen Lyases/genetics , Amino Acid Sequence , Base Sequence , Catalysis , Cloning, Molecular , DNA, Archaeal , Escherichia coli , Gene Expression , Methanobacteriales/genetics , Molecular Sequence Data , Phosphorus-Oxygen Lyases/chemistry , Phosphorus-Oxygen Lyases/isolation & purification , Protein Conformation
15.
Biochemistry ; 37(44): 15449-56, 1998 Nov 03.
Article in English | MEDLINE | ID: mdl-9799507

ABSTRACT

Specialized proteases, referred to as sheddases, secretases, or membrane-protein-solubilizing proteases (MPSPs), solubilize the extracellular domains of diverse membrane proteins by catalyzing a specific cleavage in the juxtamembrane stalk regions of such proteins. A representative MPSP (tumor necrosis factor-alpha convertase) was cloned recently and shown to be a disintegrin metalloprotease that is inhibited by peptide hydroxamates including the compound TAPI. Substrate determinants that specify cleavage by MPSPs remain incompletely characterized, but may include the physicochemical properties of the stalk or unidentified recognition motifs in the stalk or the extracellular domain. We constructed a mutant angiotensin-converting enzyme (ACE) in which the stalk has been replaced with an epidermal growth factor (EGF)-like domain (ACE-JMEGF), to test the hypothesis that MPSP cleavage requires an open, comparatively unfolded or extended stalk. Wild-type ACE is a type I transmembrane (TM) ectoprotein that is efficiently solubilized by a typical MPSP activity. We found that ACE-JMEGF was solubilized inefficiently and accumulated in a cell-associated form on transfected Chinese hamster ovary (CHO) cells; cleavage was stimulated by phorbol ester and inhibited by TAPI, features typical of MPSP activity. Determination of the C-terminus of soluble ACE-JMEGF revealed that, surprisingly, cleavage occurred at a Gly-Phe bond between the fifth and sixth cysteines within the third disulfide loop of the EGF-like domain. Reduction of intact CHO cells with tributylphosphine resulted in the rapid release of ACE-JMEGF (but not wild-type ACE) into the medium, suggesting that a proportion of membrane-bound ACE-JMEGF is cleaved but remains cell-associated via disulfide tethering. The mechanism for the release of ACE-JMEGF in the absence of chemical reduction is unclear. We conclude that the presence of a compact, disulfide-bridged domain does not per se inhibit cleavage by an MPSP activity, but ectodomain release is prevented by disulfide tethering to the TM domain.


Subject(s)
Disulfides/pharmacology , Membrane Proteins/metabolism , Peptide Fragments/physiology , Peptidyl-Dipeptidase A/metabolism , Peptidyl-Dipeptidase A/physiology , Phorbol 12,13-Dibutyrate/pharmacology , Amino Acid Sequence , Angiotensin-Converting Enzyme Inhibitors/pharmacology , Animals , Binding Sites/genetics , CHO Cells , Cell Fractionation , Cricetinae , Dipeptides/pharmacology , Epidermal Growth Factor/genetics , Hydrolysis/drug effects , Hydroxamic Acids/pharmacology , Kinetics , Membrane Proteins/antagonists & inhibitors , Membrane Proteins/genetics , Molecular Sequence Data , Peptide Fragments/genetics , Peptidyl-Dipeptidase A/genetics , Reducing Agents/pharmacology
16.
FEBS Lett ; 435(1): 55-60, 1998 Sep 11.
Article in English | MEDLINE | ID: mdl-9755858

ABSTRACT

A recombinant GST-Fyn-SH2 domain was used to purify proteins from lysates of pervanadate treated EL4 cells. N-terminal sequencing and molecular cloning of one of the purified polypeptides resulted in the identification of a novel adaptor protein that shares strong structural homology to the recently cloned Fyn-associated adaptor protein SKAP55. This protein was termed SKAP-HOM (SKAP55 homologue). Despite their striking homology, SKAP55 and SKAP-HOM have distinct characteristics. Thus, unlike SKAP55, which is exclusively expressed in T lymphocytes, SKAP-HOM expression is ubiquitous. Furthermore, while SKAP55 is constitutively tyrosine phosphorylated in resting human T cells, SKAP-HOM is expressed as a non-phosphorylated protein in the absence of external stimulus but becomes phosphorylated following T cell activation. In addition, SKAP-HOM does not associate with p59fyn in T cells although it represents a specific substrate for the kinase in COS cells. Finally, we demonstrate that, as previously shown for SKAP55, SKAP-HOM interacts with the recently identified polypeptide SLAP-130.


Subject(s)
Phosphoproteins/chemistry , Sequence Homology, Amino Acid , Amino Acid Sequence , Animals , Cell Line , Humans , Mice , Molecular Sequence Data , Phosphoproteins/biosynthesis , Phosphoproteins/metabolism , Phosphorylation , Substrate Specificity , T-Lymphocytes/enzymology , Tumor Cells, Cultured , Tyrosine/metabolism , src-Family Kinases/metabolism
17.
Electrophoresis ; 19(11): 1910-9, 1998 Aug.
Article in English | MEDLINE | ID: mdl-9740051

ABSTRACT

The techniques of enzymatic and chemical peptide ladder sequencing, coupled with ultraviolet - matrix assisted laser desorption/ionization - mass spectrometry (UV-MALDI-MS) have been improving continuously in the last five years and have now become important tools for primary structure identification. In this work, signal suppression effects, appearing in UV-MALDI-MS (excitation 337 nm) of ladder peptides, were investigated using the 17-amino acid peptide dynorphin A. We show, with examples of simple "two-peptide" systems and more complex "multi-peptide" systems, that suppression effects do in fact exist. The magnitude of the observed suppression is strongly dependent upon both the nature and the amount of the suppressing peptide. Suppression behavior of individual ladder peptides was investigated on equimolar mixtures of ten ladder peptides. Significant signal suppression was recorded for all ladder peptides, with some of them being approximately 170 times lower in signal intensity than the pure, i.e., unsuppressed peptide at the same concentration. For the investigated system--dynorphin A, 4-hydroxy-alpha-cyanocinnamic acid (4-HCCA) matrix, UV excitation--a correlation between the extent of suppression and an intractable combination of peptide hydrophobicity and the presence of several basic amino acids can be seen.


Subject(s)
Dynorphins/analysis , Peptides/analysis , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Amino Acid Sequence , Molecular Sequence Data , Spectrophotometry, Ultraviolet
18.
Planta ; 205(3): 477-82, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9640670

ABSTRACT

A three-step chromatographic procedure was developed for purification of cardenolide 16'-O-glucohydrolase (CGH) from Digitalis lanata Ehrh. leaves, including Phenyl-Sepharose hydrophobic interaction chromatography followed by SP-Sepharose cation exchange and Q-Sepharose anion-exchange chromatography. Starting with acetone dry powder the purification resulted in an 760-fold enrichment of CGH. Molecular weight, substrate specificity, pH optimum and temperature stability of CGH were determined. Antibodies against CGH were prepared in rabbits. The SDS gel electrophoresis of protein extracts from leaves of D. lanata and other D. species showed bands at 70 kDa and 36 kDa reacting with the antibodies. The 70-kDa protein is the main protein stained with CGH antibodies in freshly prepared extracts of D. lanata. It may represent undegraded CGH. The 36-kDa protein is enriched in aged CGH preparations. It is probably a degradation product. Proteins related to 70-kDa and 36-kDa bands also occur in crude protein preparations from leaves of D. heywoodii P. et M. Silva, D. mariana Boiss., D. purpurea L., and D. thapsi L. indicating that CGH is also present in these species. Purified CGH was digested with proteases V8 and Lys-C and the resulting fragments obtained were sequenced. One fragment had the typical amino-acid sequence of the catalytic center of family-1 glycosyl hydrolases (EC 3.2.1.x). Cardenolide 16'-O-glucohydrolase, like the other members of this enzyme family, appeared to have a glutamic acid residue directly involved in glycosidic bond cleavage as a nucleophile.


Subject(s)
Cardenolides/isolation & purification , Digitalis/enzymology , Glucosidases/isolation & purification , Plant Proteins , Plants, Medicinal , Plants, Toxic , Amino Acid Sequence , Animals , Carbohydrate Sequence , Cardenolides/chemistry , Cardenolides/metabolism , Glucosidases/chemistry , Glucosidases/metabolism , Molecular Sequence Data , Molecular Weight , Rabbits , Sequence Analysis
19.
J Biol Chem ; 273(21): 12952-9, 1998 May 22.
Article in English | MEDLINE | ID: mdl-9582328

ABSTRACT

After receiving an external stimulus Dictyostelium amoebae are able to rearrange their actin cytoskeleton within seconds, and phosphorylation is a prime candidate for quick modification of cytoskeletal components. We isolated a kinase from cytosolic extracts that specifically phosphorylated severin, a Ca2+-dependent F-actin fragmenting protein. In gel filtration chromatography severin kinase eluted with a molecular mass of about 300 kDa and contained a 62-kDa component whose autophosphorylation caused a mobility shift in SDS-polyacrylamide gel electrophoresis and stimulated phosphorylation of severin. Severin kinase activity could be specifically precipitated with antibodies raised against the 62-kDa polypeptide. Phosphorylation of severin was strongly reduced in the presence of Ca2+, indicating additional regulation at the substrate level. Peptide sequencing and cloning of the cDNA demonstrated that the 62-kDa protein belongs to the Ste20p- or p21-activated protein kinase family. It is most closely related to the germinal center kinase subfamily with its N-terminal positioned catalytic domain followed by a presumptive regulatory domain at the C terminus. The presence of a Ste20-like severin kinase in Dictyostelium suggests a direct signal transduction from the plasma membrane to the cytoskeleton by phosphorylation of actin-binding proteins.


Subject(s)
Dictyostelium/genetics , Fungal Proteins/metabolism , Microfilament Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Protozoan Proteins , Saccharomyces cerevisiae Proteins , Amino Acid Sequence , Animals , Chromatography, Gel , Chromatography, Ion Exchange , Cloning, Molecular , Dictyostelium/enzymology , Electrophoresis, Polyacrylamide Gel , Evolution, Molecular , Humans , Intracellular Signaling Peptides and Proteins , MAP Kinase Kinase Kinases , Molecular Sequence Data , Phosphorylation , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/isolation & purification , Rabbits , Sequence Homology, Amino Acid
20.
Eur J Biochem ; 253(1): 212-20, 1998 Apr 01.
Article in English | MEDLINE | ID: mdl-9578479

ABSTRACT

We have reported earlier the isolation and amino acid composition of bdellin A from medical leech, and characterised it as an inhibitor of trypsin, plasmin and acrosin [Fritz, H., Gebhardt, M., Meister, R. & Fink, E. (1971) in Proceedings of the international research conference on proteinase inhibitors (Fritz, H. & Tschesche, H., eds) pp. 271-280, Walter de Gruyter, Berlin]. In the present study, one of several chromatographic forms of this inhibitor was isolated from a semi-pure preparation. Elucidation of its amino acid sequence revealed that bdellin A is a member of the antistasin family. Therefore, it was renamed bdellastasin to avoid confusion with bdellin B, which is another trypsin-plasmin inhibitor from the medical leech, but of the Kazal type. Furthermore, a synthetic gene of bdellastasin was constructed, and the protein expressed in Saccharomyces cerevisiae with yields of 29 mg/l. The recombinant bdellastasin was purified by hydrophobic interaction and anion-exchange chromatography. Comparison by mass spectroscopy, far-ultraviolet circular dichroism studies, sequence determination, and inhibition characteristics demonstrated the identity of recombinant and native bdellastasin. The Ki values of bdellastasin for inhibition of bovine trypsin and human plasmin are in the nanomolar range; no inhibition was detected for factor Xa, thrombin, tissue kallikrein, plasma kallikrein and chymotrypsin. Circular dichroism analyses indicated that bdellastasin is devoid of secondary-structural elements.


Subject(s)
Leeches/chemistry , Organic Chemicals , Protease Inhibitors/chemistry , Animals , Base Sequence , Cattle , Circular Dichroism , Cloning, Molecular , DNA Primers/genetics , Gene Expression , Genetic Vectors , Humans , Invertebrate Hormones/chemistry , Invertebrate Hormones/genetics , Invertebrate Hormones/pharmacology , Leeches/genetics , Polymerase Chain Reaction , Protease Inhibitors/isolation & purification , Protease Inhibitors/pharmacology , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/pharmacology , Saccharomyces cerevisiae/genetics , Sequence Homology, Amino Acid , Serine Proteinase Inhibitors/chemistry , Serine Proteinase Inhibitors/isolation & purification , Serine Proteinase Inhibitors/pharmacology
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