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1.
Mol Biol Evol ; 24(1): 217-27, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17053048

ABSTRACT

The origin of modern wheats involved alloploidization among related genomes. To determine if Aegilops speltoides was the donor of the B and G genomes in AABB and AAGG tetraploids, we used a 3-tiered approach. Using 70 amplified fragment length polymorphism (AFLP) loci, we sampled molecular diversity among 480 wheat lines from their natural habitats encompassing all S genome Aegilops, the putative progenitors of wheat B and G genomes. Fifty-nine Aegilops representatives for S genome diversity were compared at 375 AFLP loci with diploid, tetraploid, and 11 nulli-tetrasomic Triticum aestivum wheat lines. B genome-specific markers allowed pinning the origin of the B genome to S chromosomes of A. speltoides, while excluding other lineages. The outbreeding nature of A. speltoides influences its molecular diversity and bears upon inferences of B and G genome origins. Haplotypes at nuclear and chloroplast loci ACC1, G6PDH, GPT, PGK1, Q, VRN1, and ndhF for approximately 70 Aegilops and Triticum lines (0.73 Mb sequenced) reveal both B and G genomes of polyploid wheats as unique samples of A. speltoides haplotype diversity. These have been sequestered by the AABB Triticum dicoccoides and AAGG Triticum araraticum lineages during their independent origins.


Subject(s)
Genome, Plant , Hybridization, Genetic , Poaceae/genetics , Triticum/genetics , Crosses, Genetic , Haplotypes , Phylogeny , Polymorphism, Restriction Fragment Length , Polyploidy
2.
Theor Appl Genet ; 110(6): 1052-60, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15714326

ABSTRACT

The domestication of tetraploid wheats started from their wild progenitor Triticum dicoccoides. In this paper, the geographical distribution of this progenitor is revised to include more sampling locations. The paper is based on a collection of wild and domesticated lines (226 accessions in total) analyzed by AFLP at 169 polymorphic loci. The collection includes the 69 wild lines considered by Mori et al. (2003) in their study on chloroplast DNA haplotypes of T. dicoccoides. The goal of the experiment was to reconsider which location thought to have generated the domesticated germplasm has the highest chance of being the actual site from which wild progenitors were sampled during domestication. Phylogenetic analysis of the nuclear AFLP databases indicates that two different genetic taxa of T. dicoccoides exist, the western one, colonizing Israel, Syria, Lebanon and Jordan, and the central-eastern one, which has been frequently sampled in Turkey and rarely in Iran and Iraq. It is the central-eastern race that played the role of the progenitor of the domesticated germplasm. This is supported by the cumulative results of the AFLP data from the collections of Ozkan et al. (2002) and of Mori et al. (2003), which indicate that the Turkish Karacadag population, intermixed with some Iraq-Iran lines, has a tree topology consistent with that of the progenitor of domesticated genotypes. The Turkish Kartal population belongs genetically to the central-eastern T. dicoccoides race but at the nuclear DNA level is less related to the domesticated gene pool. A general agreement between published work on tetraploid wheat domestication emerges from these results. A disagreement is nevertheless evident at the local geographical scale; the chloroplast DNA data indicate the Kartal mountains while AFLP fingerprinting points to the Karacadag Range as the putative site of tetraploid wheat domestication.


Subject(s)
Demography , Phylogeny , Polyploidy , Triticum/genetics , Cluster Analysis , Gene Frequency , Geography , Middle East , Nucleic Acid Amplification Techniques , Polymorphism, Restriction Fragment Length , Species Specificity
3.
Genet Res ; 80(2): 131-43, 2002 Oct.
Article in English | MEDLINE | ID: mdl-12534216

ABSTRACT

Two molecular maps of Triticum monococcum L were produced and integrated. The integrated map includes a total of 477 markers, 32 RFLPs, 438 AFLPs, one morphological (soft glume (Sog)) and six storage-protein markers, and covers 856 cM. The trait Sog with the recessive allele sog maps to linkage group 2S. Probably, this is the T. monococcum homologue of Tg and Tg2 in hexaploid and tetraploid wheats, respectively. Loci coding for seed storage proteins were allocated to chromosomes 1L (HMW GLU1,2 and Glu1), 1S (LMW GLU6,7, LMW GLU1-4, omega GLI1-4, gamma GLI5 and Gli-1) and 6L (alpha/beta GLI7-14). Parameters related to bread-making quality (SDS sedimentation volume, specific sedimentation volume (SSV) and total protein content) were studied in one of the two populations. A QTL that is consistently present across environments was detected for SDS sedimentation volume and for SSV. The position of the QTL on chromosome 1S was in close agreement with the map positions of storage-protein loci. A second QTL was mapped on chromosome 5. For protein content, two significant QTLs were mapped to linkage groups 1 and 5.


Subject(s)
Bread , Genes, Plant , Genetic Linkage , Quantitative Trait, Heritable , Triticum/genetics , Chromosome Mapping , Chromosomes, Plant , DNA, Plant/genetics , Genetic Markers , Genotype , Phenotype , Plant Proteins/chemistry , Plant Proteins/metabolism , Polyploidy , Protein Subunits , Triticum/metabolism
4.
Mol Biol Evol ; 17(4): 499-510, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10742042

ABSTRACT

Remains of barley (Hordeum vulgare) grains found at archaeological sites in the Fertile Crescent indicate that about 10,000 years ago the crop was domesticated there from its wild relative Hordeum spontaneum. The domestication history of barley is revisited based on the assumptions that DNA markers effectively measure genetic distances and that wild populations are genetically different and they have not undergone significant change since domestication. The monophyletic nature of barley domestication is demonstrated based on allelic frequencies at 400 AFLP polymorphic loci studied in 317 wild and 57 cultivated lines. The wild populations from Israel-Jordan are molecularly more similar than are any others to the cultivated gene pool. The results provided support for the hypothesis that the Israel-Jordan area is the region in which barley was brought into culture. Moreover, the diagnostic allele I of the homeobox gene BKn-3, rarely but almost exclusively found in Israel H. spontaneum, is pervasive in western landraces and modern cultivated varieties. In landraces from the Himalayas and India, the BKn-3 allele IIIa prevails, indicating that an allelic substitution has taken place during the migration of barley from the Near East to South Asia. Thus, the Himalayas can be considered a region of domesticated barley diversification.


Subject(s)
Genome, Plant , Hordeum/genetics , Phylogeny , Base Sequence , Crosses, Genetic , DNA Fingerprinting , DNA, Plant/analysis , Evolution, Molecular , Molecular Sequence Data , Polymerase Chain Reaction , Polymorphism, Genetic , Polymorphism, Restriction Fragment Length , Sequence Analysis, DNA
5.
Pediatr Phys Ther ; 12(4): 164-72, 2000.
Article in English | MEDLINE | ID: mdl-17091028

ABSTRACT

The purpose of this pilot study was to determine incidences per hour of stability, mobility, and transfer behaviors of children with physical disabilities in segregated and integrated preschool classrooms. Ten children performing these behaviors in physical therapy participated in this study. Each child's gross motor and school activities were observed for an entire school day and recorded in 30-second intervals. The incidences per hour of gross motor behaviors did not differ significantly between the two types of preschools; however, incidences per hour differed significantly among the types of motor behaviors and the types of school activities. Stability behaviors consistently occurred at substantially higher rates than mobility and transfer behaviors. Nearly one third of the transfers and mobility behaviors did not involve the child's active participation. Mobility behaviors occurred at highest rates during transition and gross motor activity times. The children's limited active movement is a serious concern. For motor skill learning to occur, children must participate actively. Stability activities occur more often during the preschool routine, whereas mobility and transfers occur significantly less often and likely will require additional practice.

6.
Phys Ther ; 78(9): 934-47; discussion 948-50, 1998 Sep.
Article in English | MEDLINE | ID: mdl-9736892

ABSTRACT

BACKGROUND AND PURPOSE: Do individuals with severely limited physical and cognitive abilities improve their gross motor abilities when given physical therapy intervention, and does improvement transfer to nontreatment settings? SUBJECTS: The subjects were 24 individuals (10 female, 14 male), aged 3 to 30 years (X = 20.1, SD = 8.1), who were nonambulatory and had limited adaptive behavior. METHODS: Change in gross motor ability during 18 weeks of twice-weekly therapy was measured using goal attainment scaling (GAS). Three gross motor goals were developed for each subject based on individual or caregiver needs, with one goal randomly selected as a control. Physical impairments were treated, and behavioral management principles, low-level communication approaches, high-repetition practice of goals, and a progressive reduction of both physical assistance and multisensory cues were used. An independent rater scored goal level from randomly ordered videotapes recorded during therapy and in recess and home settings. RESULTS: Mean GAS T scores were higher for treatment goals (X = 45.6, SD = 10.5) compared with control goals (X = 34.6, SD = 11.8). When the expected goal level (50) was met during therapy, mean GAS T scores in recess settings ( X = 35.9, SD = 11.5) and home settings (X = 42.2, SD = 12.2) were lower. At the conclusion of therapy, there were no differences in goal levels between treatment and control goals in both the recess and home settings. CONCLUSION AND DISCUSSION: The subjects demonstrated improvement of gross motor abilities practiced during therapy. Level of ability during therapy, however, did not consistently transfer to the recess of home settings. [Brown DA, Effgen SK, Palisano RJ. Performance following ability-focused physical therapy intervention in individuals with severely limited physical and cognitive abilities.


Subject(s)
Cognition Disorders/rehabilitation , Disabled Persons/rehabilitation , Motor Skills , Physical Therapy Modalities/methods , Adolescent , Adult , Child , Child, Preschool , Female , Goals , Humans , Male , Outcome and Process Assessment, Health Care , South Dakota
7.
J Pediatr ; 131(3): 413-8, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9329418

ABSTRACT

OBJECTIVE: To evaluate pulmonary function and exercise capacity in children with myelomeningocele. STUDY DESIGN: Prospective evaluation in a randomly selected cohort of 12 subjects (10 to 17 years of age) with myelomeningocele and 12 control subjects matched for age, sex, and arm span. METHODS: Spirometry, lung volumes, maximum respiratory pressures, maximum oxygen expenditure during arm ergometry, and anaerobic threshold were measured. RESULTS: Mean total lung capacity and fractional lung volumes were significantly lower in case subjects than control subjects. Eleven subjects (92%) had a reduced forced vital capacity; seven (58%) had restrictive disease as evidenced by reductions in total lung capacity with normal or increased forced expiratory volume in 1 second/forced vital capacity ratio. Nine subjects (75%) had respiratory muscle weakness as evidenced by reduced maximum respiratory pressures or a low maximum voluntary ventilation. Exercise capacity was reduced as evidenced by a lower maximum oxygen consumption at peak exercise (13.8 +/- 4.8 vs 21.3 +/- 7.5 ml/min per kilogram of body weight; p < 0.02) and a lower anaerobic threshold (12.4 +/- 5.1 vs 17.3 +/- 4.2 ml/min per kilogram; p < 0.01) than the control group. Though the majority of subjects with myelomeningocele had a significant degree of restrictive disease, respiratory muscle weakness, or both, only one subject had pulmonary symptoms during exercise. CONCLUSIONS: Though most subjects with myelomeningocele had a significant degree of restrictive lung disease, respiratory muscle weakness, or both, exercise capacity was mostly limited by arm weakness. Skeletal muscle weakness may mask the symptoms of an underlying pulmonary abnormality, which may not be evident unless a pathologic cause of increased ventilation is present. Pulmonary function testing is suggested to screen for these abnormalities.


Subject(s)
Exercise Tolerance , Lung Diseases, Obstructive/etiology , Meningomyelocele/complications , Meningomyelocele/physiopathology , Respiratory Insufficiency/etiology , Adolescent , Anaerobic Threshold , Body Weight , Case-Control Studies , Child , Exercise Test , Female , Forced Expiratory Volume , Humans , Male , Oxygen Consumption , Prospective Studies , Vital Capacity
8.
Pediatrics ; 99(3): 334-7, 1997 Mar.
Article in English | MEDLINE | ID: mdl-9041283

ABSTRACT

OBJECTIVE: To investigate whether gross motor skills in preschool-aged children 24 to 60 months old with otitis media with effusion (OME) are different from those of preschool children without OME. CHILDREN AND METHODS: The gross motor portion of the Peabody Developmental Motor Scales (PDMS-GM) was used to compare 13 children with OME before and after tympanostomy tube placement to 12 children without OME. RESULTS: The children with OME had significantly reduced scores preoperatively compared to those without OME on the PDMS-GM. After surgery, the children with OME had higher scores than those without OME, indicating an accelerated rate of development. CONCLUSIONS: Balance and motor development are additional factors to be considered in the medical and surgical management of the young child with chronic OME. Chronic OME may represent an additional problem for young children with existing motor deficits or other disabilities.


Subject(s)
Child Development , Developmental Disabilities/etiology , Motor Skills , Otitis Media with Effusion/complications , Case-Control Studies , Child, Preschool , Female , Humans , Male , Middle Ear Ventilation , Otitis Media with Effusion/surgery , Reproducibility of Results
9.
Phys Ther ; 72(6): 458-65, 1992 Jun.
Article in English | MEDLINE | ID: mdl-1589465

ABSTRACT

The long-term stability of hand-held dynamometric measurements was assessed in 30 muscle groups of 12 children with myelomeningocele, before and after a 23-day interval. Measurements from a majority of the muscle groups had excellent stability, based on statistical indicators of association (Pearson Product-Moment Correlation Coefficients, r =.76-.98) and agreement (intraclass correlation coefficients, ICC = .75-.99). Muscle groups with lower long-term stability were the right and left wrist extensors and flexors, the left hip adductors and extensors, the left knee flexors, and the right and left knee extensors. Upper-extremity muscle groups had higher long-term stability than did lower-extremity muscle groups. The results indicate that the dynamometric measurements were highly reliable when the test-retest interval was 23 days. Other researchers have previously shown high reliability for these measurements over shorter periods of time. Improved reliability might be obtained by supporting the lower extremity during hip extension tests; padding the dynamometer end pieces, especially when testing over bony prominences; and using a smaller, digital dynamometer. The hand-held dynamometer appears to warrant use and further investigation with pediatric populations.


Subject(s)
Hand/physiopathology , Isometric Contraction/physiology , Meningomyelocele/physiopathology , Adolescent , Child , Female , Humans , Male , Muscles/physiopathology , Posture
10.
Arthritis Care Res ; 5(2): 93-100, 1992 Jun.
Article in English | MEDLINE | ID: mdl-1390970

ABSTRACT

Children with juvenile rheumatoid arthritis (JRA) often exhibit fatigue and prolonged exercise recovery. Improved fitness through physical conditioning has not been a goal of standard medical or physical treatment regimens for JRA, and fitness levels of children with JRA have rarely been studied. We compared physical fitness in 20 6 to 11-year-old patients with polyarticular JRA with sex-, age-, and size-matched controls, using the Health Related Physical Fitness Test (HRPFT), a national, standardized, norm-referenced test. We correlated fitness scores with summary joint counts, and with an articular severity index (sum of joint swelling, tenderness, pain, and limited range for each child). The results showed that children with polyarticular JRA were less physically fit than normally active (noncompetitively athletic) children of the same sex, age, and size. There was no statistically significant relationship between increased joint counts, and/or disease severity scores, and reduced fitness scores. This suggests that physical fitness levels are less related to degree of "disease activity" than is often thought. We conclude that (1) a readily available, nationally standardized fitness test can be used to assess children with JRA: and (2) fitness levels and measures of disease activity do not correlate. We believe that multiple factors, perhaps including family, physician, and school concerns about potential disease exacerbation following exercise, may account for the low fitness levels observed in children with JRA.


Subject(s)
Arthritis, Juvenile/physiopathology , Physical Fitness , Arthritis, Juvenile/diagnosis , Arthritis, Juvenile/pathology , Child , Female , Health Surveys , Humans , Male , Severity of Illness Index
11.
Phys Ther ; 62(4): 433-5, 1982 Apr.
Article in English | MEDLINE | ID: mdl-6175003

ABSTRACT

The integration or lack of integration of the plantar grasp reflex, as tested in supported standing, was investigated in 26 developmentally disabled infants and was related to the attainment of independent ambulation without assistive devices. All infants who displayed integration of the plantar grasp reflex later developed independent ambulation. Thirteen infants did not display integration of the reflex during three to five years of follow-up. Of those 13 infants, only 1 achieved independent ambulation. This preliminary clinical investigation provides evidence of the prognostic value of the presence or absence of the plantar grasp reflex as an indicator of ambulation potential in developmentally disabled infants.


Subject(s)
Developmental Disabilities/physiopathology , Foot/physiopathology , Reflex , Female , Humans , Infant , Locomotion , Male , Reflex, Abnormal/physiopathology
12.
Phys Ther ; 61(6): 873-7, 1981 Jun.
Article in English | MEDLINE | ID: mdl-7243886

ABSTRACT

Deaf children show subnormal performance on standard tests of static balance. This study investigated the effect of a 10-day exercise program of static balance activities on the static balance ability of severely deaf children. A pretest-posttest control group design was used. The subjects, 49 deaf children, were tested on a force platform in four different stances. The experimental group then participated in a daily exercise program of activities traditionally used to facilitate balance ability. A comparison of the change in steadiness scores between the control and experimental groups revealed no significant difference in static balance ability as measured by degree of sway. However, the length of time that children in the experimental group could stand on one leg increased significantly. The lack of improvement in the amount of sway after use of this widely accepted therapeutic program serves to highlight the need for further investigation of the effect of any exercise program on static balance ability.


Subject(s)
Deafness/complications , Exercise Therapy , Movement Disorders/therapy , Child , Female , Humans , Male , Physical Therapy Modalities/instrumentation , Postural Balance
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