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1.
Astron Astrophys ; 6192018 Nov 12.
Article in English | MEDLINE | ID: mdl-30595605

ABSTRACT

CONTEXT: The analysis of isomeric species of a compound observed in the interstellar medium (ISM) is a useful tool to understand the chemistry of complex organic molecules. It could, likewise, assist in the detection of new species. AIMS: Our goal consists in analyzing one of the two most stable species of the C3H4O family, methyl ketene, whose actual rotational parameters are not precise enough to allow its detection in the ISM. The obtained parameters will be used to search for it in the high-mass star-forming regions Orion KL and Sagittarius B2, as well as in the cold dark clouds TMC-1 in the Taurus Molecular Cloud and Barnard 1 (B1-b). METHODS: A millimeter-wave room-temperature rotational spectrum of methyl ketene was recorded from 50 to 330 GHz. The internal rotation analysis of its ground state and first torsional excited state was performed with the rho-axis method employing the RAM36 program. RESULTS: More than 3000 transitions of the rotational spectrum of the ground state (Kamax = 18) and first torsional excited state (Kamax = 13) of methyl ketene were fitted using a Hamiltonian that contains 41 parameters with an RMS (root mean square) of 41 kHz. Column density limits were calculated but no lines were detected in the ISM belonging to methyl ketene.

2.
J Chem Phys ; 147(13): 134305, 2017 Oct 07.
Article in English | MEDLINE | ID: mdl-28987118

ABSTRACT

The deficiencies of argon, krypton, and xenon observed in the atmosphere of Titan as well as anticipated in some comets might be related to a scenario of sequestration by H3+ in the gas phase at the early evolution of the solar nebula. The chemical process implied is a radiative association, evaluated as rather efficient in the case of H3+, especially for krypton and xenon. This mechanism of chemical trapping might not be limited to H3+ only, considering that the protonated ions produced in the destruction of H3+ by its main competitors present in the primitive nebula, i.e., H2O, CO, and N2, might also give stable complexes with the noble gases. However the effective efficiency of such processes is still to be proven. Here, the reactivity of the noble gases Ar, Kr, and Xe, with all protonated ions issued from H2O, CO, and N2, expected to be present in the nebula with reasonably high abundances, has been studied with quantum simulation method dynamics included. All of them give stable complexes and the rate coefficients of their radiative associations range from 10-16 to 10-19 cm3 s-1, which is reasonable for such reactions and has to be compared to the rates of 10-16 to 10-18 cm3 s-1, obtained with H3+. We can consider this process as universal for all protonated ions which, if present in the primitive nebula as astrophysical models predict, should act as sequestration agents for all three noble gases with increasing efficiency from Ar to Xe.

3.
J Chem Phys ; 144(11): 111103, 2016 Mar 21.
Article in English | MEDLINE | ID: mdl-27004855

ABSTRACT

The detection of ArH(+) has revived the interest in the search for noble gas containing species. Despite helium being the second most abundant element in the universe (He/H ∼ 1/10), it has never been observed in any other form than that of a neutral/ionized atom in the interstellar medium. Because He is the "most noble" gas, its non-observation as part of neutral molecular systems is understandable. It is more surprising for charged species, especially HeH(+) whose spectral signatures are well documented in the laboratory. The purpose of this work was to find a simple positive ion containing He, and likely to be observed as an alternative to undetected HeH(+). Among the HeX(2+) diatomics formed with first row atoms, we focused on X = C because of both its relative abundance and the magnitude of its ionization potentials with respect to He. The formation of CHe(2+) by radiative association is the center of this study. The question was addressed by means of numerical simulations using high level ab initio calculations of the CHe(2+) potential surface, followed by a quantum chemical determination of the rate coefficients for the corresponding radiative association in the range of 10 to 1000K. The radiative association path shows a potential well deep enough to accommodate 20 vibrational levels, and no barrier to oppose the reaction. The rate coefficient varies from ∼4.5 × 10(-20) cm(3)s(-1) to ∼2.5 × 10(-22) cm(3)s(-1) for the temperatures considered. The present study suggests that the existence of this species has to be searched for mainly in highly irradiated regions.

4.
Phys Chem Chem Phys ; 14(30): 10515-22, 2012 Aug 14.
Article in English | MEDLINE | ID: mdl-22743834

ABSTRACT

A recent controversy about the presence of arsenic in biological systems prompted us to investigate the possible replacement of phosphorus by arsenic in prebiotic species small enough to be potentially identified in space. Systematic computational experiments were carried out on simple systems able to form a peptide or analogous bond. Density Functional Theory (DFT) within the B3LYP formalism, MP2 and CCSD(T) methods were used to determine the most stable isomers that can possibly form from the [C,H,O,As] and [C,3H,O,As] sets of atoms. It was found that HAsCO, like HPCO and HNCO was the most stable isomer. With three hydrogen atoms, the peptide-like bond (AsH(2)-CH=O) is not the most stable structure, contrary to NH(2)-CH=O. It is ∼9 kcal mol(-1) higher than the most stable structure, CH(2)[double bond, length as m-dash]As-OH. To assess the plausibility of the As to P substitution, a comparative study of the dimethylphosphate (DMP) and dimethylarsenate (DMA) anions was then carried out. It was found that the gauche-gauche arrangement that mimics the helix structure is the most stable one in both model molecules, showing that there is no structural evidence to discard the hypothesis of the possible inclusion of As in place of P in the DNA architecture. The topological analysis of the ELF function showed a weakening by 50% of two As-O covalent bonds in all the DMA conformers. It means that if As replaces P, the structure of the DNA helix could be weakened. Rotational constants and IR frequencies of the low-lying isomers are given to encourage laboratory experiments on these prototype molecules.


Subject(s)
Arsenic/chemistry , Models, Molecular , Prebiotics/analysis , DNA/chemistry , DNA/metabolism , Hydrogen/chemistry , Isomerism , Nucleic Acid Conformation , Organophosphorus Compounds/chemistry
5.
Interdiscip Sci ; 2(1): 48-56, 2010 Mar.
Article in English | MEDLINE | ID: mdl-20640796

ABSTRACT

In this report we address the question of whether some chiral molecules have a probability of being detected in the interstellar medium (ISM). To this end we rely on the Minimum Energy Principle which states that the most abundant isomer of a given generic formula should be that of lowest energy. The relative stability of the chiral molecules with respect to the other possible species of the same chemical formula are calculated by means of quantum simulations based on density functional theory (DFT). The result is that no chiral isomer in the C(3)H(6)O (acetone), C(2)H(5)ON, C(3)H(7)ON (amide), C(2)H(5)O(2)N, C(3)H(7)O(2)N (amino acid) families is the most stable species. This is also true of the C(2)(H(2)O)(2) and C(3)(H(2)O)(3) species when restricted to the sugar families, but another chiral molecule of the same chemical formula, i.e. lactic acid HOCH(CH(3))COOH is the most stable of all structures. Two other molecules with an NH(2) group, namely, NH(2)CH(CH(3))CN, the precursor of alpha-alanine and NH(2)CH(CH(3))OH, the simplest chiral molecule, are also the most stable species in their respective families. These three molecules satisfy the conditions for being detected according to the Minimum Energy Principle. With dipoles moments of 2.3, 2.7 and 1.6 Debye respectively, they make appealing targets. The present study should encourage laboratory experiments to determine rotational constants of higher precision prior to submission of observation proposals.


Subject(s)
Exobiology/methods , Biology/methods , Carbon/chemistry , Chemistry, Organic/methods , Extraterrestrial Environment , Humans , Isomerism , Models, Chemical , Models, Theoretical , Probability
6.
Phys Chem Chem Phys ; 12(16): 4165-71, 2010 Apr 28.
Article in English | MEDLINE | ID: mdl-20379508

ABSTRACT

Finding complex organic molecules in the interstellar medium (ISM) is a major concern for understanding the possible role of interstellar organic chemistry in the synthesis of prebiotic species. The present interdisciplinary report is a prospective study aimed at helping detection of heteroaromatic compounds or at least of some of their isomers in the ISM. The thermodynamic stabilities of the C(4)H(5)N, C(4)H(4)O, C(4)H(4)S families were calculated using density functional theory (DFT). It was found that pyrrole, furan and thiophene are unambiguously the most stable isomers at the 10-50 K temperatures of the ISM. Several of the less stable isomers were synthesized and flash vacuum thermolysis experiments were performed on these species. Although the detection of pyrrole in the pyrolysis of many compounds has been reported in the literature, we observed that none of its isomers led to pyrrole in these conditions, which suggests that other formation routes are to be considered. On the other hand, these three aromatic compounds present a very high stability, few % been decomposed at 1500 K by flash vacuum thermolysis; these experiments also show a great stability of crotonitrile that is the most stable compound that can be formed in these conditions. The rotational constants, dipole moments and IR frequencies of the low-lying isomers are given to encourage laboratory experiments on these prototype molecules.


Subject(s)
Furans/chemistry , Pyrroles/chemistry , Thiophenes/chemistry , Isomerism , Prebiotics , Thermodynamics
7.
J Phys Chem A ; 114(9): 3320-8, 2010 Mar 11.
Article in English | MEDLINE | ID: mdl-20141108

ABSTRACT

The successive hydrogenation of CO has been investigated by two methods. The first is hydrogenation of a CO surface. The second is co-injection of CO molecules and H atoms. Both methods have been performed at 3 and 10 K. In the first method, the interaction of H atoms with solid CO at 10 K shows that CO is consumed to form H(2)CO and CH(3)OH. No trace of species such as HCO and CH(3)O is detected. No product was observed when the same experiment was performed at 3 K. In the second method, when H and CO are codeposited at 10 K, HCO and CH(3)O are observed. In fact, the yield of these intermediate species depends on the amount of the H radicals interacting with CO molecules. At 3 K, the presence of H(2) in the solid screens the hydrogenation reaction. This causes a termination for the reaction in the stage of the formation of HCO and H(2)CO. At 10 K, H(2) cannot condense, and the reaction between CO and H is total. In this case, species such as HCO, H(2)CO, CH(3)O, and CH(3)OH are observed.


Subject(s)
Carbon Monoxide/chemistry , Formaldehyde/chemical synthesis , Methanol/chemical synthesis , Computer Simulation , Formaldehyde/chemistry , Hydrogenation , Methanol/chemistry , Surface Properties
8.
J Chem Phys ; 130(17): 174313, 2009 May 07.
Article in English | MEDLINE | ID: mdl-19425782

ABSTRACT

Recent studies on the formation of XH(3)(+) noble gas complexes have shown strategic implications for the composition of the atmospheres of the giant planets as well as for the composition of comets. One crucial factor in the astrophysical process is the relative abundances of the noble gases versus H(3)(+). It is the context in which the possibility for clustering with more than one noble gas (X(n)H(3)(+) up to n = 3) has been investigated for noble gases X ranging from neon to krypton. In order to assert our results, a variety of methods have been used including ab initio coupled cluster CCSD and CCSD(T), MP2, and density functional BH&HLYP levels of theory. All complexes with one, two, and three noble gases are found to be stable in the Ne, Ar, and Kr families. These stable structures are planar with the noble gases attached to the apices of the H(3)(+) triangle. The binding energy of the nth atom, defined as the X(n)H(3)(+) --> X(n-1)H(3)(+) + X reaction energy, increases slightly with n varying from 1 to 3 in the neon series, while it decreases in the argon series and shows a minimum for n = 2 in the krypton series. The origin of this phenomenon is to be found in the variations in the respective vibrational energies. A topological analysis of the electron localization function shows the importance of the charge transfer from the noble gases toward H(3)(+) as a driving force in the bonding along the series. It is also consistent with the increase in the atomic polarizabilities from neon to krypton. Rotational constants and harmonic frequencies are reported in order to provide a body of data to be used for the detection in laboratory prior to space observations. This study strongly suggests that the noble gases could be sequestered even in an environment where the H(3)(+) abundance is small.


Subject(s)
Noble Gases/chemistry , Protons , Argon/chemistry , Electrons , Krypton/chemistry , Neon/chemistry , Spectrum Analysis , Thermodynamics , Vibration
9.
Phys Chem Chem Phys ; 10(15): 2089-97, 2008 Apr 21.
Article in English | MEDLINE | ID: mdl-18688363

ABSTRACT

The present report is a prospective study aimed at finding phosphorus containing compounds for astrobiology. Since PN, PC and HCP are the only species detected so far, it was deemed reasonable to enlarge the quest for phosphorus compounds to mixed carbon oxygen containing compounds [C,xH,O,P] analogue to the CHON family. Ab initio Møller-Plesset (MP2), Coupled Cluster (CCSD(T)) and Density Functional Theory (DFT) were used. State of the art level of theory, CCSD(T)/cc-pVQZ, was necessary to show that CH3-PH2=O is the most stable isomer, with CH3-PH-OH close by in the [C,5H,O,P] sub-family. This structure has the same C-P-O connectivity as the most stable compound of the [C,3H,O,P] sub-family, CH3-P=O but differs from the simplest [C,H,O,P] system HP=C=O. Rotational constants B=7.1377 and C=6.0636 GHz associated with a dipole moment of 4.2 Debye together with an IR spectrum with very strong bands at 1214, 2282, 2264 and 1039 cm(-1) have been calculated for CH3-PH2=O. For CH3-P=O, one has B=7.9881 and C=6.4659 GHz, a dipole moment of 2.9 Debye and four IR bands at 1198, 623, 835, 1256 cm(-1) of medium intensity. The simplest HPCO system with B=5.5206 and 5.3952 GHz and a dipole moment of 0.8 Debye has only one very strong IR frequency at 2037 cm(-1). The above values should be precise enough to encourage laboratory experiments on these prototype molecules.


Subject(s)
Carbon/chemistry , Electrons , Exobiology , Hydrogen/chemistry , Oxygen/chemistry , Phosphorus/chemistry , Computer Simulation , Isomerism , Models, Molecular , Molecular Structure , Spectrophotometry, Infrared
10.
J Chem Phys ; 127(1): 014308, 2007 Jul 07.
Article in English | MEDLINE | ID: mdl-17627347

ABSTRACT

The affinity of H(3) (+) to combine with noble gases X has been investigated from neon to xenon using ab initio coupled cluster [CCSD and CCSD(T)] and density functional BH&HLYP levels of theory. For all noble gases, the stable structures belong to a C(2v) symmetry with an apex of the H(3) (+) triangle pointing to the noble gas. The structure of the complexes changes gradually from a practically pure Ne-H(3) (+) arrangement to a situation close to XeH(+)-H(2). A topological analysis of the electron localization function is used to illustrate the changes in the bonding along the series. The lowest dissociation energies of NeH(3) (+) and ArH(3) (+) ( approximately 1 and approximately 7 kcalmol) correspond to the breaking of the complexes according to X+H(3) (+), while the lowest dissociation energies of KrH(3) (+) and XeH(3) (+) ( approximately 8 and approximately 3 kcalmol) correspond to the breaking according to XH(+)+H(2). Rotational constants and harmonic frequencies are reported. Apart from XeH(3) (+) whose dipole moment (mu=2.6 D) may not be large enough, all the other complexes with dipole moments in the range of 6-8 D should be reasonable targets for detection by microwave spectroscopy. The present calculations are intended to stimulate both laboratory experiments and spatial observations since the possible sequestration of noble gases by H(3) (+) may have strong implications on the composition of astrophysical objects.

11.
Spectrochim Acta A Mol Biomol Spectrosc ; 57(4): 859-73, 2001 Mar 15.
Article in English | MEDLINE | ID: mdl-11345259

ABSTRACT

This paper looks at the possibility of astronomical detection of molecules of prebiotic interest containing phosphorus. Attention has been focused on the most stable species that can be formed with the four [C,H,O,P] atoms. Ab initio coupled cluster molecular orbital methods and density functional theory have been used. It is found that the best candidate for detection is singlet HPCO (corresponding to singlet HNCO), which lies 23.5 kcal/mol lower than the next isomer (HOCP) and has a non-negligible dipole moment of 0.8 D. Theoretical rotational constants and infrared (IR) spectra have been determined for HPCO and the closely related HPCS. By correcting the known inadequacies in the calculations with the average theoretical to experimental ratio from two benchmark molecules (HOCO+ and HNCO), it is possible to obtain rotational constants and IR frequencies of considerably higher accuracy. The corrected values of B = 5.5322 GHz and C = 5.4071 GHz for HPCO, and B = 3.0416 GHz and C = 3.0014 GHz for HPCS should be accurate to within a few tenths of a percent. It can also be predicted that only the 2000 cm(-1) (HPCO) and 1400 cm(-1) (HPCS) IR bands have sufficient intensity to be searched in the low-abundance conditions prevailing in space.


Subject(s)
Astronomy , Phosphorus Compounds/analysis , Astronomical Phenomena , Calibration , Carbon/chemistry , Clinical Laboratory Techniques , Hydrogen/chemistry , Oxygen/chemistry , Phosphorus/chemistry , Phosphorus Compounds/chemical synthesis , Phosphorus Compounds/chemistry , Sulfur/chemistry , Trace Elements/analysis
13.
Astrophys J ; 408(2): 530-8, 1993 May 10.
Article in English | MEDLINE | ID: mdl-11539450

ABSTRACT

In order to test the hypothesis of ionized polycyclic aromatic hydrocarbons (PAHs) as possible carriers of the UIR bands, we realized a computational exploration on selected PAHs of small dimension in order to identify which changes ionization would induce on their IR spectra. In this study we performed ab initio calculations of the spectra of neutral and positively ionized naphthalene, anthracene, and pyrene. The results are significantly important. The frequencies in the cations are slightly shifted with respect to the neutral species, but no general conclusion can be reached from the three molecules considered. By contrast, the relative intensities of most vibrations are strongly affected by ionization, leading to a much better agreement between the calculated CH/CC vibration intensity ratios and those deduced from observations.


Subject(s)
Astronomy , Extraterrestrial Environment , Polycyclic Aromatic Hydrocarbons/analysis , Quantum Theory , Anthracenes/chemistry , Astronomical Phenomena , Molecular Structure , Naphthalenes/chemistry , Polycyclic Aromatic Hydrocarbons/chemistry , Pyrenes/chemistry , Spectrophotometry, Infrared
14.
J Phys Chem ; 96(20): 7882-6, 1992.
Article in English | MEDLINE | ID: mdl-11538051

ABSTRACT

We report the results of a theoretical study of the effect of ionization on the IR spectrum of naphthalene, using ab initio molecular orbital theory. For that purpose we determined the structures, band frequencies, and intensities of neutral and positively ionized naphthalene. The calculated frequencies and intensities allowed an assignment of the most important bands appearing in the newly reported experimental spectrum of the positive ion. Agreement with the experimental spectrum is satisfactory enough to take into consideration the unexpected and important result that ionization significantly affects the intensities of most vibrations. A possible consequence on the interpretation of the IR interstellar emission, generally supposed to originate from polycyclic aromatic hydrocarbons (PAHs), is briefly presented.


Subject(s)
Models, Theoretical , Naphthalenes/analysis , Naphthalenes/chemistry , Polycyclic Compounds/analysis , Chemical Phenomena , Chemistry, Physical , Computer Simulation , Polycyclic Compounds/chemistry , Spectrophotometry, Infrared
15.
Astrophys J ; 369: L13-6, 1991 Mar 01.
Article in English | MEDLINE | ID: mdl-11538264

ABSTRACT

Rotational constants and dipole moments for linear-chain radicals CnCH and CnN are estimated using a combination of ab initio molecular orbital calculations and observed data on the starting members of the series. CnCH with n = 0-5 have been observed by radioastronomy in carbon-rich interstellar clouds; higher members of the series have 2 pi ground states with large dipole moments and are strong candidates for observation. CN and C3N have also been observed by radioastronomy; higher members of the series, with the possible exception of C5N, have 2 pi ground states with near-zero dipole moments making their interstellar detection hopeless under present observational conditions. C5N can be a strong candidate only if it has a 2 sigma ground state, and our best computations so far indicate that this is not the case.


Subject(s)
Extraterrestrial Environment , Solar System , Acetylene/analysis , Acetylene/chemistry , Astronomical Phenomena , Astronomy , Hydrocarbons/analysis , Hydrocarbons/chemistry , Nitrogen/analysis , Nitrogen/chemistry
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