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1.
Zootaxa ; 5419(4): 451-494, 2024 Mar 08.
Article in English | MEDLINE | ID: mdl-38480312

ABSTRACT

In its traditional, paraphyletic context (sans Astigmata), oribatid mites comprise more than 11,000 known species (Subas 2022). They are largely fungivores and decomposers in organic horizons of soil and have a plesiotypic ontogeny that includes four active, free-living juvenile instars. In a taxonomically organized 2014 catalogue, we summarized literature resources concerning the 805 species for which ontogenetic data (mainly morphological) were available. Herein, we supplement that catalogue with all data known to us that were published during the intervening decade. These relate to 267 species, of which 165 were described prior to 2014. As in the 2014 catalogue, representation is strongest among: the middle-derivative hyporder Nothrina; brachypyline superfamilies that are affiliated with aquatic, semiaquatic or intertidal environments (Limnozetoidea, Ameronothroidea); some eupheredermous groups (Plateremaeoidea, Damaeoidea); and Ceratozetoidea. Also as in 2014, groups that are underreprented, based on their high known diversity, are the ptyctimous Mixonomata (Euphthiracaroidea, Phthiracaroidea) and the brachypyline superfamilies Oppioidea and Oripodoidea.


Subject(s)
Mites , Animals , Soil
2.
J Biomed Opt ; 29(Suppl 1): S11516, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38249994

ABSTRACT

Significance: Dynamic photoacoustic computed tomography (PACT) is a valuable imaging technique for monitoring physiological processes. However, current dynamic PACT imaging techniques are often limited to two-dimensional spatial imaging. Although volumetric PACT imagers are commercially available, these systems typically employ a rotating measurement gantry in which the tomographic data are sequentially acquired as opposed to being acquired simultaneously at all views. Because the dynamic object varies during the data-acquisition process, the sequential data-acquisition process poses substantial challenges to image reconstruction associated with data incompleteness. The proposed image reconstruction method is highly significant in that it will address these challenges and enable volumetric dynamic PACT imaging with existing preclinical imagers. Aim: The aim of this study is to develop a spatiotemporal image reconstruction (STIR) method for dynamic PACT that can be applied to commercially available volumetric PACT imagers that employ a sequential scanning strategy. The proposed reconstruction method aims to overcome the challenges caused by the limited number of tomographic measurements acquired per frame. Approach: A low-rank matrix estimation-based STIR (LRME-STIR) method is proposed to enable dynamic volumetric PACT. The LRME-STIR method leverages the spatiotemporal redundancies in the dynamic object to accurately reconstruct a four-dimensional (4D) spatiotemporal image. Results: The conducted numerical studies substantiate the LRME-STIR method's efficacy in reconstructing 4D dynamic images from tomographic measurements acquired with a rotating measurement gantry. The experimental study demonstrates the method's ability to faithfully recover the flow of a contrast agent with a frame rate of 10 frames per second, even when only a single tomographic measurement per frame is available. Conclusions: The proposed LRME-STIR method offers a promising solution to the challenges faced by enabling 4D dynamic imaging using commercially available volumetric PACT imagers. By enabling accurate STIRs, this method has the potential to significantly advance preclinical research and facilitate the monitoring of critical physiological biomarkers.


Subject(s)
Cone-Beam Computed Tomography , Tomography, X-Ray Computed , Contrast Media , Image Processing, Computer-Assisted
3.
Zookeys ; 1182: 223-235, 2023.
Article in English | MEDLINE | ID: mdl-37886212

ABSTRACT

Phymatodiscidaefam. nov. is diagnosed, with Phymatodiscus as the type genus. A new genus, Bardizongen. nov., with Bardizoneotvosisp. nov. (from Indonesia) as the type species, is erected to accommodate the Phymatodiscus species with an eye-like dorsal depression. Six Phymatodiscus species are reclassified as Bardizon: B.aokii (Hiramatsu, 1985), comb. nov., B.haradai (Hiramatsu, 1985), comb. nov., B.oculatus (Hirschmann, 1977), comb. nov., B.kuni (Kontschán & Starý, 2011), comb. nov., B.insolitus (Kontschán & Ripka, 2016), comb. nov., and B.malayicus (Kontschán & Starý, 2012), comb. nov. The new species differs from the previously described congeners in the sculptural pattern, the shapes of the dorsal and ventral setae, and the sculptural pattern of the sternal shield of the male and the genital shield of the female. A list of all known phymatodiscid species is presented. Phymatodiscustitanicus (Berlese, 1905) is moved to the genus Bostocktrachys: B.titanicus (Berlese, 1905), comb. nov. (family Trachyuropodidae).

4.
Zootaxa ; 5258(4): 465-474, 2023 Mar 30.
Article in English | MEDLINE | ID: mdl-37044583

ABSTRACT

The present study is based on galumnid mites (Oribatida, Galumnidae) collected from leaf litter of two mixed forests in Cuba; six species from three genera are identified. Three new species-Pergalumna (Pergalumna) cienfuegosensis sp. nov., P. (P.) foveolatostriata sp. nov. and Galumna (G.) gigantea sp. nov.-are described. Allogalumna brevisetosa (Bayartogtokh & Weigmann, 2005) is recorded in the Neotropical region for the first time; P. (P.) obvia (Berlese, 1914) is recorded in Cuba for the first time.


Subject(s)
Mites , Animals , Cuba , Forests
5.
Zootaxa ; 5239(4): 521-536, 2023 Feb 13.
Article in English | MEDLINE | ID: mdl-37045084

ABSTRACT

Two new mite species of the family Cunaxidae (Acari, Prostigmata)-Cunaxa asiatica sp. nov. and C. smileyi sp. nov.-are described from Vietnam, based on females. Cunaxa asiatica sp. nov. is similar to C. doxa (Chaudri, 1980) in having the medial hysterosomal shield smooth and bearing setae c1-e1, c2, but differs from the latter by the presence of 1 sts, finger-like palpofemoral apophysis and smooth setae c1-e1 on basifemora IV (vs. 2 sts, uncinate palpofemoral apophysis and spiculate c1-e1 in C. doxa). Cunaxa smiley sp. nov. is similar to C. oblongostriata Kalúz and Ermilov, 2022 in having 4-4-4-4 sts on telofemora I-IV and 2 solenidia on genu II, but differs from the latter by the presence of 3-3-3-0 sts on basifemora I-IV, 1 asl and 5 sts on genu IV, and well developed medial hysterosomal shield (vs. basifemora I-IV setal formula of 3-3-3-1 sts, genu IV bearing 7 sts, and the hysterosomal medial shield absent in C. oblongostriata).


Subject(s)
Acari , Mites , Female , Animals
6.
J Biomed Opt ; 28(3): 036001, 2023 03.
Article in English | MEDLINE | ID: mdl-36895414

ABSTRACT

Significance: To effectively study preclinical animal models, medical imaging technology must be developed with a high enough resolution and sensitivity to perform anatomical, functional, and molecular assessments. Photoacoustic (PA) tomography provides high resolution and specificity, and fluorescence (FL) molecular tomography provides high sensitivity; the combination of these imaging modes will enable a wide range of research applications to be studied in small animals. Aim: We introduce and characterize a dual-modality PA and FL imaging platform using in vivo and phantom experiments. Approach: The imaging platform's detection limits were characterized through phantom studies that determined the PA spatial resolution, PA sensitivity, optical spatial resolution, and FL sensitivity. Results: The system characterization yielded a PA spatial resolution of 173 ± 17 µ m in the transverse plane and 640 ± 120 µ m in the longitudinal axis, a PA sensitivity detection limit not less than that of a sample with absorption coefficient µ a = 0.258 cm - 1 , an optical spatial resolution of 70 µ m in the vertical axis and 112 µ m in the horizontal axis, and a FL sensitivity detection limit not < 0.9 µ M concentration of IR-800. The scanned animals displayed in three-dimensional renders showed high-resolution anatomical detail of organs. Conclusions: The combined PA and FL imaging system has been characterized and has demonstrated its ability to image mice in vivo, proving its suitability for biomedical imaging research applications.


Subject(s)
Optical Imaging , Photoacoustic Techniques , Animals , Mice , Optical Imaging/methods , Tomography, X-Ray Computed , Tomography , Spectrum Analysis , Phantoms, Imaging , Photoacoustic Techniques/methods
7.
Zootaxa ; 5360(2): 255-268, 2023 Oct 26.
Article in English | MEDLINE | ID: mdl-38220613

ABSTRACT

Two new species of Uropodina are described from PeruStammeroplitis panguanaensis sp. nov. and Rotundabaloghia (Circobaloghia) koepckeorum sp. nov.. The genus Stammeroplitis is diagnosed and a key to its Neotropical species is presented. Twenty species of Oplitis are moved to Stammeroplitis. The new family Clausiadinychidae fam. nov. is established for the genus Clausiadinychus and a key to the known species of Clausiadinychus species is provided. New information is presented for three known species of Uropodina (Clausiadinychus quadricaudatus Hirschmann, 1973, Rotundabaloghia dillerae Boszyk, 2019 and Trichouropoda solaris Hirschmann, 1972).


Subject(s)
Mites , Animals
8.
Zootaxa ; 5360(1): 113-126, 2023 Oct 25.
Article in English | MEDLINE | ID: mdl-38220621

ABSTRACT

Three new species of Oppiidae (Oribatida)Graptoppia (Apograptoppia) rooensis sp. nov., Neoamerioppia (Neoamerioppia) mexicoensis sp. nov., and Ramusella (Insculptoppia) quintanaensis sp. nov.are described based on adults collected from leaf litter in a large karst pit in the secondary semi-evergreen tropical forest in Mexico. The subgenus Graptoppia (Apograptoppia) is recorded for the first time in the Neotropical region.


Subject(s)
Mites , Animals , Mexico , Forests
9.
Zootaxa ; 5325(4): 556-570, 2023 Aug 10.
Article in English | MEDLINE | ID: mdl-38220893

ABSTRACT

The family Symbioribatidae is recorded in Vietnam for the first time. Two new arboreal species of SymbioribatesS. bimorphus sp. nov. and S. tripartitus sp. nov.are described, based on adults (males and females) collected from tree branches of Dipterocarpus alatus in Cat Tien National Park, Vietnam; the former species is sexually dimorphic, the latter species is the first non-sexually dimorphic representative within the genus. The generic diagnosis is presented. An identification key, distribution and habitats to the known representatives of Symbioribates are provided.


Subject(s)
Mites , Female , Male , Animals , Trees , Vietnam , Ecosystem , Parks, Recreational
10.
Zootaxa ; 5324(1): 49-65, 2023 Aug 04.
Article in English | MEDLINE | ID: mdl-38220935

ABSTRACT

A new species of the genus Spatiodamaeus (Oribatida, Damaeidae) is described from Russia, based on adult and juvenile instars collected from bark of Acer platanoides and soil-litter of mixed and broadleaf forests in European part of Russia and Western Siberia. The adult of Spatiodamaeus kalugaensis sp. nov. is similar to S. nortoni (Bayartogtokh, 2004) comb. nov. in having epimeral neotrichy but differs from the latter by the presence of the parastigmatic tubercle Sa, the form of the parastigmatic tubercle Sp and the notogastral setae c1, c2, and the barbulation of the rostral, epimeral, anogenital, and notogastral setae of p-series. Comparisons between juvenile instars of the new species and the known juveniles of Spatiodamaeus and Epidamaeus are presented.


Subject(s)
Mites , Animals , Body Size , Russia , Forests
11.
Zootaxa ; 5324(1): 37-48, 2023 Aug 04.
Article in English | MEDLINE | ID: mdl-38220936

ABSTRACT

Juvenile instars of Zetorchella arsiensis (Oribatida, Caloppiidae) are described, based on specimens collected from mosses on the swamp at the top of the mountain in Arsi Mountains National Park, Ethiopia. It is the first data on ontogeny for the family Caloppiidae. Main morphological differences between juveniles of Caloppiidae with other families in Oripodoidea are presented.


Subject(s)
Mites , Humans , Animals
12.
Zootaxa ; 5324(1): 24-36, 2023 Aug 04.
Article in English | MEDLINE | ID: mdl-38220937

ABSTRACT

A new species of the genus Tyrphonothrus (Oribatida, Malaconothridae) is described from Ethiopia, based on adult and juvenile instars; it is collected from mosses on the swamp at the top of the mountain in Arsi Mountains National Park. Tyrphonothrus digeluensis sp. nov. differs from the related species Tyrphonothrus obesus (Yamamoto & Coetzee, 2004) and T. rectus (Yamamoto & Coetzee, 2004) by the pubescence of exobothridial, epimeral, anoadanal, and some notogastral setae. Comparison between juvenile instars of the new species and the known juveniles of Malaconothridae is presented.


Subject(s)
Mites , Animals , Ethiopia , Wetlands , Body Size , Organ Size
14.
Zootaxa ; 5336(2): 233-246, 2023 Aug 22.
Article in English | MEDLINE | ID: mdl-38221098

ABSTRACT

Three new oribatid mite species of the family Scheloribatidae (Oribatida)Dometorina (Dometorina) robusta sp. nov., Phylloribatula latiseta sp. nov., Scheloribates (Scheloribates) paraflagellisetosus sp. nov.are described, based on adults collected from tree branches of Dipterocarpus alatus in southern Vietnam. Representatives of Dometorina (Dometorina) and Phylloribatula are recorded in the Vietnamese fauna for the first time. An identification key to the known species of Phylloribatula is provided.


Subject(s)
Dipterocarpaceae , Mites , Animals , Vietnam , Trees
15.
Zootaxa ; 5133(2): 226-240, 2022 May 04.
Article in English | MEDLINE | ID: mdl-36101102

ABSTRACT

Three new species of Pergalumna (Pergalumna) (Oribatida, Galumnidae)P. (P.) dedzaensis sp. nov., P. (P.) paratsavoensis sp. nov. and P. (P.) parafrater sp. nov.are described from sifting litter of highland forests in Central and Southern Malawi. An identification key to known species/subspecies of the genus from the Afrotropical region is presented.


Subject(s)
Mites , Animals , Forests , Malawi
16.
Zootaxa ; 5087(4): 541-557, 2022 Jan 10.
Article in English | MEDLINE | ID: mdl-35391271

ABSTRACT

Two new mite species of the genus Cunaxa are described based on female specimens in Vietnam: Cunaxa oblongostriata sp. n. and C. sergeyenkoi sp. n. (Acari: Prostigmata: Cunaxidae). Cunaxa oblongostriata sp. n. differs from the related species, C. setirostris (Hermann, 1804), in having the propodosomal shield triangular and longitudinal striae between dorsal setae d1d1; while in C. setirostris, the propodosomal shield is trapezoidal and striae between setae d1d1 are transversal. Cunaxa sergeyenkoi sp. n. differs from two related species, C. bochkovi Khaustov Kuznetsov, 1998 and C. womersleyi Baker and Hoffmann, 1948, by the basifemoral chetotaxy of legs IIV: 4-4-2-1 sts; while C. bochkovi and C. womersleyi have the basifemoral chaetotaxy IIV: 3-3-3-1 sts and 4-4-3-1 sts, respectively.


Subject(s)
Acari , Mites , Animals , Female , Vietnam
17.
Zootaxa ; 5105(1): 131-138, 2022 Mar 02.
Article in English | MEDLINE | ID: mdl-35391311

ABSTRACT

A new oribatid mite genus, Luisumaoppia gen. nov. (Oribatida, Oppiidae, Oppiinae), with Luisumaoppia molinoensis sp. nov. as type species, is described from soil and leaf litter in primary mountain cloud forest in Andes, Peru. It differs from the other genera of Oppiidae by the presence of modified (nearly straight), directed backwards leg claws located on bent pretarsi. The relationships of Luisumaoppia gen. nov. with the related genera in Oppiinae are presented.


Subject(s)
Mites , Animals , Forests , Peru , Soil
18.
Zootaxa ; 5115(1): 91-102, 2022 Mar 11.
Article in English | MEDLINE | ID: mdl-35391378

ABSTRACT

Based on materials from the leaf litter of a mixed forest in Crimea, a new diagnosis for the sexually dimorphic species, Chamobates callipygis Pavlichenko, 1991, is presented to accommodate its previously unreported females. This is the only species in Chamobatidae showing a distinct sexual dimorphism, which is expressed by the posterior porose region on the notogaster, such that males only have a large protuberance on the posterior part of notogaster bearing a pair of fused porose areas A3, and a densely striated region behind them. The specific function of this structure is not yet known, but the sexual dimorphism is presumably involved in pheromonal communication facilitating sperm transfer. Also, the males of this species have a few transverse striations in the dorsomedial part of notogaster (at level of porose areas A1 and A2). Further, we discuss all cases of sexual dimorphism in the superfamily Ceratozetoidea, and the possible function of this dimorphism.


Subject(s)
Mites , Sex Characteristics , Animals , Female , Forests , Male
19.
Zookeys ; 1082: 63-71, 2022.
Article in English | MEDLINE | ID: mdl-35115864

ABSTRACT

A new Ivoria species (Ivoriaalourouai sp. nov.) is described from Ivory Coast based on five females. The new species differs from the previously described congener (Ivoriataienesis Kontschán, 2019) based on the shape of female genital shield, dorsal setae, centro-caudal part of the marginal shield and peritremes.

20.
Zootaxa ; 5187(1): 169-210, 2022 Sep 14.
Article in English | MEDLINE | ID: mdl-37044802

ABSTRACT

Two closely related species of the genus Piribelba (Oribatida, Damaeidae) are redescribed based on morphology of adults and developmental instars. Redescription of P. rossica (Bulanova-Zachvatkina, 1957) is based on specimens collected in Russia, including specimens identified by Bulanova-Zachvatkina; redescription of P. piriformis (Mihelcic, 1964) is based on specimens collected in Europe, including Mihelcic's types. COX1 sequence barcoding of P. piriformis and P. rossica indicated that they are distinct species, having 12.0% uncorrected p-distances and 13.3% Kimura two-parameter distances (K2P). Based on the morphological and genetical differences, the synonymy of P. rossica and P. piriformis is rejected. A key to known species of Piribelba is provided.


Subject(s)
Mites , Animals , Base Sequence , Mites/classification , Mites/genetics
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