ABSTRACT
In this study, an avian leukosis virus (ALV) strain (GX-2020-01) was isolated from a three-yellow chicken, and its complete genome was 7570 bp long with the typical organization "5'LTR-gag-pol-env-3'LTR." Phylogenetic analysis and sequence comparison revealed that it belongs to the ALV-J subgroup. However, the LTR region of GX-2020-01 is highly similar to that of reference strains of ALV-K/E (96.61%-97.10%), demonstrating that this novel isolate is a natural recombinant. The replication efficiency of GX-2020-01 was significantly lower than the previously isolated ALV-J strain (NX0101), indicating that the recombination event might have resulted in slower virus replication, making it harder for it to be detected through routine testing.
Subject(s)
Avian Leukosis Virus/classification , Avian Leukosis/virology , Genome, Viral , Poultry Diseases/virology , Animals , Avian Leukosis Virus/isolation & purification , Chickens , China , Phylogeny , Reassortant Viruses/classification , Reassortant Viruses/isolation & purification , Viral Proteins/genetics , Whole Genome SequencingABSTRACT
OBJECTIVE: To explore detecting methods and quality control standard system for hepatitis A virus( HAV) in water for fruits and vegetables production. METHODS: 100 µL of coliphage MS2( 2. 5 × 10~9 pfu / mL) was added into each water sample, and positively charged membrane filter method was used to capture virus. The virus extraction efficiency of each sample can be calculated according to standard curve of coliphage. Then the quality control system and real-time RT-PCR method were established. RESULTS: This research compared the extraction efficiency of HAV and coliphage MS2 which were added into the water samples at the same time. The extraction efficiency of HAV was from 1. 24% to 32. 68%, and coliphage MS2 1. 64% to 14. 24%. The efficiency met the requirements of ISO / TS 15216-2-2013. Meanwhile, the HAV in 30 water samples were detected, and one was positive. The extraction efficiency of coliphage MS2 was from1. 24% to 24. 19%, and the standard deviation was 0. 0612. CONCLUSION: This research establish a quality control system to ensure the quality of test results.
Subject(s)
Food Contamination/analysis , Fruit/microbiology , Hepatitis A virus/isolation & purification , Levivirus/genetics , Quality Control , RNA, Viral/analysis , Real-Time Polymerase Chain Reaction/standards , Vegetables/microbiology , Virology/methods , Water Microbiology , Food Microbiology , Hepatitis A virus/genetics , Humans , RNA, Viral/genetics , Real-Time Polymerase Chain Reaction/methods , Reverse Transcriptase Polymerase Chain Reaction , Sensitivity and Specificity , Virology/standards , WaterABSTRACT
This study explored risk assessment and genotyping of hepatitis A virus(HAV)in fruit and vegetable products. Two hundred and sixteen samples of fruit and vegetable products were examined by real-time RT-PCR. Six samples tested positive for hepatitis A virus, including frozen strawberries, frozen blueberries, frozen diced potatoes, frozen diced apple and frozen raspberries, accounting for 2.8% of the total samples tested. These six HAV isolates were genotyped by nested RT-PCR amplification, and a single band was detected in isolates from frozen diced apple(210-1999)and frozen blueberries(210-2002).These two isolates belong to the HAV IB subtype, based on analysis of evolution and homology. This study provides HAV risk information for fruit and vegetable enterprises and food safety management departments. Furthermore, it lays a foundation for HAV traceability, and provides technical support to ensure product safety for enterprises at critical control points including planting, harvest, processing and packaging. These results provide reliable data for epidemiological diagnosis.
Subject(s)
Food Contamination/analysis , Fruit/virology , Hepatitis A virus/isolation & purification , Vegetable Products/virology , Food Safety , Genotype , Hepatitis A virus/classification , Hepatitis A virus/genetics , Humans , Phylogeny , RNA, Viral/genetics , Real-Time Polymerase Chain ReactionABSTRACT
Colletotrichum capsici f. nicotianae is an important plant pathogen in tobacco-grown area of Weifang region of Shangdong Province, China. In this study, the toxicity of liquid culture media from different isolates was characterized, and some properties of the toxic ingredient were identified. The results indicated that the optimal toxin-producing conditions for C. capsici f. nicotianae were in potato dextrose broth under pH 6.0, at 25~30 °C for 13 days. The liquid culture media from all isolates were toxic to tobacco plants and induced the wilting symptoms. The toxin from the liquid culture media has thermal, acid-base stability and a broad spectrum of toxicity to the plants. Furthermore, the direct bioassay for two components of the liquid filtrates precipitated by ethanol showed that the active ingredient of the toxin is a kind of nonprotein substance, which was further supported by the papain hydrolysis test.
