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1.
J Hum Genet ; 65(7): 635, 2020 07.
Article in English | MEDLINE | ID: mdl-32385338

ABSTRACT

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

2.
J Hum Genet ; 65(3): 263-270, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31863082

ABSTRACT

G6PD deficiency is the commonest enzyme deficiency found in humans. Current diagnostic methods lack sensitivity to detect all cases of G6PD deficiency. We evaluated the reverse dot blot flow-through hybridisation assay designed to detect simultaneously multiple known G6PD mutations in a group of Malaysian neonates. Archival DNA samples from 141 G6PD-deficient neonates were subjected to reverse dot blot flow-through hybridisation assay using the GenoArray Diagnostic Kit (Hybribio Limited, Hong Kong) and DNA sequencing. The method involved PCR amplification of 5 G6PD exons using biotinylated primers, hybridisation of amplicons to a membrane containing oligoprobes designed for G6PD mutations known to occur in the Malaysian population and colour detection by enzyme immunoassay. The assay detected 13 of the 14 G6PD mutations and genotyped 133 (94.3%) out of 141 (102 males, 39 females) cases. Among the 39 female G6PD-deficient neonates, there were 7 homozygous and 6 compound heterozygous cases. The commonest alleles were G6PD Viangchan 871G > A (21%) and G6PD Mahidol 487G > A(20%) followed by G6PD Mediterranean 563C > T, (14%), G6PD Vanua Lava 383T > C (12%), G6PD Canton 1376G > T (10%), G6PD Orissa 131C > G (6.3%) G6PD Coimbra 592C > T (5.6%) plus 6 other mutations. DNA sequencing of remaining cases revealed 6 cases of intron 11 nt 93C > T not previously reported in Malaysia and two novel mutations, one case each of nt 1361G > T and nt 1030G > A. We found the reverse dot blot assay easy to perform, rapid, accurate and reproducible, potentially becoming an improved diagnostic test for G6PD deficiency.


Subject(s)
Glucosephosphate Dehydrogenase Deficiency/genetics , Glucosephosphate Dehydrogenase/genetics , Mutation/genetics , Exons/genetics , Female , Genotype , Glucosephosphate Dehydrogenase Deficiency/pathology , Humans , Infant, Newborn , Introns/genetics , Malaysia/epidemiology , Male , Polymerase Chain Reaction
3.
Malays J Pathol ; 36(3): 163-8, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25500514

ABSTRACT

Prenatal diagnosis is essential in the new era of diagnosis and management of genetic diseases in obstetrics. Multiple ligation-dependent probe amplification (MLPA) is a recent technique for prenatal diagnosis for the relative quantification of 40 different nucleic acid sequences in one single reaction. We had utilized the MLPA technique in detecting aneuploidies in amniotic fluid samples from 25 pregnant women from the Obstetrics and Gynaecology Department UKMMC, versus the quantitative fluorescent polymerase chain reaction (QF-PCR) method. Conclusive results were obtained in 18 cases and all were concordant with that of the QF-PCR. All four cases of trisomies were correctly identified including one case with maternal cell contamination.


Subject(s)
Amniocentesis/methods , Aneuploidy , Genetic Testing/methods , Nucleic Acid Amplification Techniques/methods , Polymerase Chain Reaction/methods , Prenatal Diagnosis/methods , Adult , DNA Probes , Female , Humans , Pregnancy , Young Adult
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